Running UIMA annotators in parallel - uima

We have a UIMAFit pipeline with multiple independent annotators, looking for an approach to execute them in parallel. Please suggest.
How about below approach
1)Create multiple analysis engine by grouping annotators
2)Get instances of Jcas from pool and initialize them with same text.
3)Use java thread executor framework to run analysis engine in parallel.
4)Merge Jcas

Following link may be helpful for this case.
http://dalelane.co.uk/blog/?p=2247
But, it seems to be xml based execution of annotators not using uimafit.

Related

How should I slice and orchestrate a configurable batch network using Spring Batch and Spring Cloud Data Flow?

We would like to migrate the scheduling and sequence control of some Kettle import jobs from a proprietary implementation to a Spring Batch flavour, good practice implementation.
I intend to use Spring Cloud Data Flow (SCDF) server to implement and run a configurable sequence of the existing external import jobs.
The SCDF console Task editor UI seems promising to assemble a flow. So one Task wraps one Spring Batch, which in a single step only executes a Tasklet starting and polling the Carte REST API. Does this make sense so far?
Would you suggest a better implementation?
Constraints and Requirements:
The external Kettle jobs are triggered and polled using Carte REST API. Actually, it's one single Kettle job implementation, called with individual parameters for each entity to be imported.
There is a configurable, directed graph of import jobs for several entities, some of them being dependent on a correct import of the previous entity type. (e.g. Department, then Employee, then Role assignments...)
With the upcoming implementation, we would like to get
monitoring and controlling (start, abort, pause, resume)
restartability
easy reconfigurability of the sequence in production (possibly by GUI, or external editor)
possibly some reporting and statistics.
As my current understanding, this could be achieved by using Spring Cloud Data Flow (SCDF) server, and some Task / Batch implementation / combination.
Correct me if I'm wrong, but a single Spring Batch job with its hardwired flow seems not very suitable to me. Or is there an easy way to edit and redeploy a Spring Batch with changed flow in production? I couldn't find anything, not even an easy to use editor for the XML representation of a batch.
Yes, I believe you can achieve your design goals using Spring Cloud Data Flow along with the Spring Cloud Task/Spring Batch.
The flow of multiple Spring Batch Jobs (using the Composed Task) can be managed using Spring Cloud Data Flow as you pointed from the other SO thread.
The external Kettle jobs are triggered and polled using Carte REST API. Actually, it's one single Kettle job implementation, called with individual parameters for each entity to be imported.
There is a configurable, directed graph of import jobs for several entities, some of them being dependent on a correct import of the previous entity type. (e.g. Department, then Employee, then Role assignments...)
Again, both the above can be managed as a Composed Task (with the composed task consisting of a regular task as well as Spring Batch based applications).
You can manage the parameters passed to each task/batch upon invocation via batch job parameters or task/batch application properties or simply command-line arguments.
With the upcoming implementation, we would like to get
monitoring and controlling (start, abort, pause, resume)
restartability
easy reconfigurability of the sequence in production (possibly by GUI, or external editor)
possibly some reporting and statistics.
Spring Cloud Data Flow helps you achieve these goads. You can visit the Task Developer Guide and the Task Monitoring Guide for more info.
You can also check the Batch developer guide from the site as well.

Can I create a simple Talend Job using its Java Source Code?

can we generate a Talend Job through its Java code? For the sake of simplicity consider a simple Talend Job without any context variables for different environments and other complications.
Java code for a job is generated by the Studio, but there is no reverse operation consisting in generating a job from its corresponding Java code.
So, the short answer is "No, you can't".
You may consider to generate other files such as job.properties and job.item which contain the configuration for each component used by a job, but I'm afraid it could be very hazardous and at least a very long trip to try to do that.

Talend job batch processing

I am exploring Talend at work, I was asked if Talend supports batch processing as in running the job in multiple threads. After going through the user guide I understood threading is possible with sub jobs. I would like to know if it is possible to run the a job with a single action in parallel
Talend has excellent multi threading support. There are two basic methods for this. One method gives you more control and is implemented using components. The other method is implemented as job setting.
For the first method see my screenshot. I use tParallelize to load three files into three tables at the same time. Then when all three files are successfully loaded I use the same tParallelize to set the values of a control table. tParallelize can also be connected to tRunJob as easily as a subjob.
The other method is described very well here in Talend Help: Talend Help- Run Jobs in Parallel
Generally I recommend the first method because of the control it gives you, but if your job follows the simple pattern described in the help link, that method works as well.

Spring Batch architecture

Hi
I am a novice in Spring Batch world and last days I've spent time watching Michael Minella's youtube video, read some documentation and successfully run some demo projects I found on the internet. I think Spring Batch is a hot candidate for our needs. But here is our story.
I am working in a company that developed their own scheduling and batch framework, for more than a decade ago, for their business department. The framework is capable of running DB stored procs, DB functions and dynamic SQLs. Needless to say it is very challenging to maintain it since too many people with various development skills did the coding and they don't work here anymore. Our framework may handle jobs and steps to run sequentially as well as async (as Spring Batch). We have also a Job Repository where we store whole job definitions (users create new jobs via GUI), job instances with its context (in case the server goes down, when server is up it will resume running a job).
My questions are following:
Can we create new Spring Batch jobs dynamically (either via XML og code) and via standard SB interfaces store them to the JobRepository DB?
Today, at certain time period, we have up to hundred of job executions simultaneously. They are also reusing a connection pool to the DB. Older Spring Batch ref documentation states JobFactory will create fresh ApplicationContext for each job execution. How can we achieve reusing connection pools if this is the case in Spring Batch.
I know there is a support for continuing failed steps but what if the server/app goes down, will I be able to restart my app and retrieve job instance with its context from JobRepository in order to continue from failed step?
Can a "step1.1" in "job1" be dependent on "step 2.1" from "job2" finishing within last hour? In such scenarios I may be using a step listener on "step1.1" to accomplish this?
Kind regards
Toto
You have a lot of material here to cover, so let me respond one point at a time:
Can we create new Spring Batch jobs dynamically (either via XML or code) and via standard SB interfaces store them to the JobRepository DB?
Can you generate a job definition dynamically? Yes. We do it in Spring XD with regards to the job orchestration piece (the composed job DSL is used to generate an XML file for example.
Does Spring Batch provide facilities to do this? No. You'd have to code it yourself.
Also note that you'd have to store the definition in your own table (the schema defined by Spring Batch doesn't have a table for this).
Today, at certain time period, we have up to hundred of job executions simultaneously. They are also reusing a connection pool to the DB. Older Spring Batch ref documentation states JobFactory will create fresh ApplicationContext for each job execution. How can we achieve reusing connection pools if this is the case in Spring Batch.
You can use parent/child context configurations to reuse beans including a DataSource. Define the DataSource in the parent and then the jobs that depend on it in child contexts.
I know there is a support for continuing failed steps but what if the server/app goes down, will I be able to restart my app and retrieve job instance with its context from JobRepository in order to continue from failed step?
This is really an orchestration concern. Spring Batch, by design, does not address the orchestration of jobs into consideration. This allows you to orchestrate them how you want.
The way I'd recommend handling this is via Spring XD or (depending on your timelines) Spring Cloud Data Flow. These tools provide orchestration capabilities including the redeployment of a job if it goes down. That being said, it won't restart a job that was running if it fails because that typically requires some form of human decision based on use case. However, Spring XD currently (and Spring Cloud Data Flow will) have the capabilities to implement something like this in a pretty straight forward way.
Can a "step1.1" in "job1" be dependent on "step 2.1" from "job2" finishing within last hour? In such scenarios I may be using a step listener on "step1.1" to accomplish this?
In cases like this, I'd start to question how your job is configured. You can use a JobExecutionDecider to decide if a step should be executed or not if it still makes sense.
All things considered, while you can accomplish most of what you're looking for with Spring Batch, using something like Spring XD or Spring Cloud Data Flow will make your life a lot easier.
Can we create new Spring Batch jobs dynamically (either via XML og code) and via standard SB interfaces store them the JobRepository DB?
It is easy to use StepBuilderFactory, FlowBuilder etc. to programatically build the Spring Batch artifacts. You'll probably want to back those artifacts with Spring Beans (to get nice facilities like the step/job spring scopes, injection and so on) and for that you can use prototype, execution scoped and job scoped beans, or even use facilities such as BeanDefinitionBuilder to dynamically create beans.
Older Spring Batch ref documentation states JobFactory will create fresh ApplicationContext for each job execution. How can we achieve reusing connection pools if this is the case in Spring Batch.
The GenericApplicationContextFactory creates a child application context. You can have the "global" beans in the parent application context.
I know there is a support for continuing failed steps but what if the server/app goes down, will I be able to restart my app and retrieve job instance with its context from JobRepository in order to continue from failed step?
Yes, but not that easily.
Can a "step1.1" in "job1" be dependent on "step 2.1" from "job2" finishing within last hour? In such scenarios I may be using a step listener on "step1.1" to accomplish this?
A JobExecutionDecider will likely be the best option there.

Run a single job in parallel

I need to know that how can we run a single job in parallel with different parameters in talend.
The answer is straightforward, but rather depends on what you want, and whether you are using free Talend or commercial.
As far as parameters go, make sure that your jobs are using context variables - this is the preferred way of passing parameters in.
As for running in parallel, there are a few options.
Talend's studio is a java code generator, so you can export your job (it's just java code) and run it wherever you want. How you invoke it is up to you - schedule it, invoke it N times manually, your call. Obviously, if your job touches shared resources then making it safe to run in parallel is up to you - the usual concurrency issues apply.
If you have the commercial product, then you can use the Talend admin centre (TAC). The TAC allows you to schedule a job more than once with different contexts. Or, if you want to keep the parallelization logic inside your job, then consider using the tParallelize component in one job to run another job N times.