Using sed I want to parse Heroku's log-runtime-metrics like this one:
2016-01-29T00:38:43.662697+00:00 heroku[worker.2]: source=worker.2 dyno=heroku.17664470.d3f28df1-e15f-3452-1234-5fd0e244d46f sample#memory_total=54.01MB sample#memory_rss=54.01MB sample#memory_cache=0.00MB sample#memory_swap=0.00MB sample#memory_pgpgin=17492pages sample#memory_pgpgout=3666pages
the desired output is:
worker.2: 54.01MB (54.01MB is being memory_total)
I could not manage although I tried several alternatives including:
sed -E 's/.+source=(.+) .+memory_total=(.+) .+/\1: \2/g'
What is wrong with my command? How can it be corrected?
The .+ after source= and memory_total= are both greedy, so they accept as much of the line as possible. Use [^ ] to mean "anything except a space" so that it knows where to stop.
sed -E 's/.+source=([^ ]+) .+memory_total=([^ ]+) .+/\1: \2/g'
Putting your content into https://regex101.com/ makes it really obvious what's going on.
I'd go for the old-fashioned, reliable, non-extended sed expressions and make sure that the patterns are not too greedy:
sed -e 's/.*source=\([^ ]*\) .*memory_total=\([^ ]*\) .*/\1: \2/'
The -e is not the opposite of -E, which is primarily a Mac OS X (BSD) sed option; the normal option for GNU sed is -r instead. The -e simply means that the next argument is an expression in the script.
This produces your desired output from the given line of data:
worker.2: 54.01MB
Bonus question: There are some odd lines within the stream, I can usually filter them out using a grep pipe like | grep memory_total. However if I try to use it along with the sed command, it does not work. No output is produced with this:
heroku logs -t -s heroku | grep memory_total | sed.......
Sometimes grep | sed is necessary, but it is often redundant (unless you are using a grep feature that isn't readily supported by sed, such as Perl regular expressions).
You should be able to use:
sed -n -e '/memory_total=/ s/.*source=\([^ ]*\) .*memory_total=\([^ ]*\) .*/\1: \2/p'
The -n means "don't print by default". The /memory_total=/ matches the lines you're after; the s/// content is the same as before. I removed the g suffix that was there previously; the regex would never match multiple times anyway. I added the p to print the line when the substitution occurs.
Related
I am trying to create a filter command to reduce the lines from a log file, assume each line contains partition made of date,
/iamthepath01/20200301/file01.txt
/iamthepath02/20200302/file02.txt
....
/iamthepathxx/20210619/filexx.txt
then from thousands of lines I only want to keep the ones with two string in the path
/202106
/202105
and remove any other lines
I have tried following command
sed -i -e '\(/202105\|/202106\)!d' ~/log.txt
above command threw
sed: -e expression #1, char 24: unterminated address regex
You can use
sed -i '/\/20210[56]/!d' ~/log.txt
Or, if you need to use more specific alternatives and further enhance the pattern:
sed -i -E '/\/(202105|202106)/!d' ~/log.txt
Details:
-i - GNU sed option for inline file replacement
-E - option enabling POSIX ERE regex syntax
/\/20210[56]/ - regex that matches /20210 and then either 5 or 6
\/(202105|202106) - the POSIX ERE pattern that matches / and then either 202105 or 202106
!d - removes the lines not matching the pattern.
See the online demo:
#!/bin/bash
s='/iamthepath01/20200301/file01.txt
/iamthepath02/20200302/file02.txt
/iamthepathxx/20210619/filexx.txt'
sed '/\/20210[56]/!d' <<< "$s"
Output:
/iamthepathxx/20210619/filexx.txt
sed is the wrong tool for this. If you want a script that's as fragile as the sed one then use grep as it's the tool that exists solely to do a simple g/re/p (hence the name) like you're doing:
$ grep '/20210[56]' file
/iamthepathxx/20210619/filexx.txt
or if you want a more robust solution that focuses just on the part of the line you want to match and so will avoid false matches, then use awk:
$ awk -F '/' '$3 ~ /^20210[56]/' file
/iamthepathxx/20210619/filexx.txt
This might work for you (GNU sed):
sed -ni '\#/20210[56]#p' file
This uses seds -n grep-like option to turn off implicit printing and -i option to edit the file in place.
Normally sed uses the /.../ to match but other delimiters may be used if the first is escaped e.g. \#...#.
So the above solution will filter the existing file down to lines that contain either /202105 or /202106.
N.B. grep will almost certainly be faster in finding the above lines however the use of the -i option may be the ultimate reason for choosing sed (although the same outcome can be achieved by tacking on the > tmpFile && mv tmpFile file to a grep solution).
I'm looking for an equivalent of perl -pe. Ideally, it would be replace with sed if it's possible. Any help is highly appreciated.
The code is:
perl -pe 's/^\[([^\]]+)\].*$/$1/g'
$ echo '[foo] 123' | perl -pe 's/^\[([^\]]+)\].*$/$1/g'
foo
$ echo '[foo] 123' | sed -E 's/^\[([^]]+)\].*$/\1/'
foo
sed by default accepts code from command line, so -e isn't needed (though it can be used)
printing the pattern space is default, so -p isn't needed and sed -n is similar to perl -n
-E is used here to be as close as possible to Perl regex. sed supports BRE and ERE (not as feature rich as Perl) and even that differs from implementation to implementation.
with BRE, the command for this example would be: sed 's/^\[\([^]]*\)\].*$/\1/'
\ isn't special inside character class unless it is an escape sequence like \t, \x27 etc
backreferences use \N format (and limited to maximum 9)
Also note that g flag isn't needed in either case, as you are using line anchors
I am trying to write a sed expression that can remove urls from a file
example
http://samgovephotography.blogspot.com/ updated my blog just a little bit ago. Take a chance to check out my latest work. Hope all is well:)
Meet Former Child Star & Author Melissa Gilbert 6/15/09 at LA's B&N https://hollywoodmomblog.com/?p=2442 Thx to HMB Contributor #kdpartak :)
But I dont get it:
sed 's/[\w \W \s]*http[s]*:\/\/\([\w \W]\)\+[\w \W \s]*/ /g' posFile
FIXED!!!!!
handles almost all cases, even malformed URLs
sed 's/[\w \W \s]*http[s]*[a-zA-Z0-9 : \. \/ ; % " \W]*/ /g' positiveTweets | grep "http" | more
The following removes http:// or https:// and everything up until the next space:
sed -e 's!http\(s\)\{0,1\}://[^[:space:]]*!!g' posFile
updated my blog just a little bit ago. Take a chance to check out my latest work. Hope all is well:)
Meet Former Child Star & Author Melissa Gilbert 6/15/09 at LA's B&N Thx to HMB Contributor #kdpartak :)
Edit:
I should have used:
sed -e 's!http[s]\?://\S*!!g' posFile
"[s]\?" is a far more readable way of writing "an optional s" compared to "\(s\)\{0,1\}"
"\S*" a more readable version of "any non-space characters" than "[^[:space:]]*"
I must have been using the sed that came installed with my Mac at the time I wrote this answer (brew install gnu-sed FTW).
There are better URL regular expressions out there (those that take into account schemes other than HTTP(S), for instance), but this will work for you, given the examples you give. Why complicate things?
The accepted answer provides the approach that I used to remove URLs, etc. from my files. However it left "blank" lines. Here is a solution.
sed -i -e 's/http[s]\?:\/\/\S*//g ; s/www\.\S*//g ; s/ftp:\S*//g' input_file
perl -i -pe 's/^'`echo "\012"`'${2,}//g' input_file
The GNU sed flags, expressions used are:
-i Edit in-place
-e [-e script] --expression=script : basically, add the commands in script
(expression) to the set of commands to be run while processing the input
^ Match start of line
$ Match end of line
? Match one or more of preceding regular expression
{2,} Match 2 or more of preceding regular expression
\S* Any non-space character; alternative to: [^[:space:]]*
However,
sed -i -e 's/http[s]\?:\/\/\S*//g ; s/www\.\S*//g ; s/ftp:\S*//g'
leaves nonprinting character(s), presumably \n (newlines). Standard sed-based approaches to remove "blank" lines, tabs and spaces, e.g.
sed -i 's/^[ \t]*//; s/[ \t]*$//'
do not work, here: if you do not use a "branch label" to process newlines, you cannot replace them using sed (which reads input one line at a time).
The solution is to use the following perl expression:
perl -i -pe 's/^'`echo "\012"`'${2,}//g'
which uses a shell substitution,
'`echo "\012"`'
to replace an octal value
\012
(i.e., a newline, \n), that occurs 2 or more times,
{2,}
(otherwise we would unwrap all lines), with something else; here:
//
i.e., nothing.
[The second reference below provides a wonderful table of these values!]
The perl flags used are:
-p Places a printing loop around your command,
so that it acts on each line of standard input
-i Edit in-place
-e Allows you to provide the program as an argument,
rather than in a file
References:
perl flags: Perl flags -pe, -pi, -p, -w, -d, -i, -t?
ASCII control codes: https://www.cyberciti.biz/faq/unix-linux-sed-ascii-control-codes-nonprintable/
remove URLs: sed to remove URLs from a file
branch labels: How can I replace a newline (\n) using sed?
GNU sed manual: https://www.gnu.org/software/sed/manual/sed.html
quick regex guide: https://www.gnu.org/software/sed/manual/html_node/Regular-Expressions.html
Example:
$ cat url_test_input.txt
Some text ...
https://stackoverflow.com/questions/4283344/sed-to-remove-urls-from-a-file
https://www.google.ca/search?dcr=0&ei=QCsyWtbYF43YjwPpzKyQAQ&q=python+remove++citations&oq=python+remove++citations&gs_l=psy-ab.3...1806.1806.0.2004.1.1.0.0.0.0.61.61.1.1.0....0...1c.1.64.psy-ab..0.0.0....0.-cxpNc6youY
http://scikit-learn.org/stable/modules/generated/sklearn.feature_extraction.text.TfidfVectorizer.html
https://bbengfort.github.io/tutorials/2016/05/19/text-classification-nltk-sckit-learn.html
http://datasynce.org/2017/05/sentiment-analysis-on-python-through-textblob/
https://www.google.ca/?q=halifax&gws_rd=cr&dcr=0&ei=j7UyWuGKM47SjwOq-ojgCw
http://www.google.ca/?q=halifax&gws_rd=cr&dcr=0&ei=j7UyWuGKM47SjwOq-ojgCw
www.google.ca/?q=halifax&gws_rd=cr&dcr=0&ei=j7UyWuGKM47SjwOq-ojgCw
ftp://ftp.ncbi.nlm.nih.gov/
ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/alignment_indices/20100804.alignment.index
Some more text.
$ sed -e 's/http[s]\?:\/\/\S*//g ; s/www\.\S*//g ; s/ftp:\S*//g' url_test_input.txt > a
$ cat a
Some text ...
Some more text.
$ perl -i -pe 's/^'`echo "\012"`'${2,}//g' a
Some text ...
Some more text.
$
Can anyone explain how to use sed to delete all characters up to & including the 2nd comma on a line in a CSV file?
The beginning of a typical line might look like
1234567890,ABC/DEF, and the number of digits in the first column varies i.e. there might be 9 or 10 or 11 separate digits in random order, and the letters in the second column could also be random. This randomness and varying length makes it impossible to use any explicit pattern searching.
You could do it with sed like this
sed -e 's/^\([^,]*,\)\{2\}//'
not 100% sure on the syntax, I tried it, and it seems to work though. It'll delete zero-or-more of anything-but-a-comma followed by a comma, and all that is matched twice in succession.
But even easier would be to use cut, like this
cut -d, -f3-
which will use comma as a delimiter, and print fields 3 and up.
EDIT:
Just for the record, both sed and cut can work with a file as a parameter, just append it at the end like so
cut -d, -f3- myfile.txt
or you can pipe the output of your program through them
./myprogram | cut -d, -f3-
sed is not the "right" choice of tool (although it can be done). since you have structured data, you can use fields/delimiter method instead of creating complicated regex.
you can use cut
$ cut -f3- -d"," file
or gawk
$ gawk -F"," '{$1=$2=""}1' file
$ gawk -F"," '{for(i=3;i<NF;i++) printf "%s,",$i; print $NF}' file
Thanks for all replies - with the help provided I have written the simple executable script below which does what I want.
#!/bin/bash
cut -d, -f3- ~/Documents/forex_convert/input.csv |
sed -e '1d' \
-e 's/-/,/g' \
-e 's/ /,/g' \
-e 's/:/,/g' \
-e 's/,D//g' > ~/Documents/forex_convert/converted_input
exit
How can I make sed filter matching lines according to some expression, but ignore non-matching lines, instead of letting them print?
As a real example, I want to run scalac (the Scala compiler) on a set of files, and read from its -verbose output the .class files created. scalac -verbose outputs a bunch of messages, but we're only interested in those of the form [wrote some-class-name.class].
What I'm currently doing is this (|& is bash 4.0's way to pipe stderr to the next program):
$ scalac -verbose some-file.scala ... |& sed 's/^\[wrote \(.*\.class\)\]$/\1/'
This will extract the file names from the messages we're interested in, but will also let all other messages pass through unchanged! Of course we could do instead this:
$ scalac -verbose some-file.scala ... |& grep '^\[wrote .*\.class\]$' |
sed 's/^\[wrote \(.*\.class\)\]$/\1/'
which works but looks very much like going around the real problem, which is how to instruct sed to ignore non-matching lines from the input. So how do we do that?
If you don't want to print lines that don't match, you can use the combination of
-n option which tells sed not to print
p flag which tells sed to print what is matched
This gives:
sed -n 's/.../.../p'
Another way with plain sed:
sed -e 's/.../.../;t;d'
s/// is a substituion, t without any label conditionally skips all following commands, d deletes line.
No need for perl or grep.
(edited after Nicholas Riley's suggestion)
Rapsey raised a relevant point about multiple substitutions expressions.
First, quoting an Unix SE answer, you can "prefix most sed commands with an address to limit the lines to which they apply".
Second, you can group commands within curly braces {} (separated with a semi-colon ; or a new line)
Third, add the print flag p on the last substitution
Syntax:
sed -n -e '/^given_regexp/ {s/regexp1/replacement1/flags1;[...];s/regexp1/replacement1/flagsnp}'
Example (see Here document for more details):
Code:
sed -n -e '/^ha/ {s/h/k/g;s/a/e/gp}' <<SAMPLE
haha
hihi
SAMPLE
Result:
keke
sed -n '/.../!p'
There is no need for a substitution.