How to update Apache FOP in eXist-db?

How to update Apache FOP in eXist-db? - apache-fop

Aside my question about commercial processors, I would like to test the newest version of Apache FOP. However, I met problems whilst trying to do that according to this article.
There are some parts which are different in the last dev versions of eXist but the overall idea should work, I think.
I had:
# XSL FO transformations (Uses Apache FOP)
include.module.xslfo = true
include.module.xslfo.url = http://apache.cs.uu.nl/xmlgraphics/fop/binaries/fop-1.1-bin.zip
Changed to:
# XSL FO transformations (Uses Apache FOP)
include.module.xslfo = true
include.module.xslfo.url = http://apache.cs.uu.nl/xmlgraphics/fop/binaries/fop-2.1-bin.zip
I removed the old fop.jar file from $EXIST_HOME/extensions/modules/libs/.
After these steps I ran build.sh. Strange thing was it did not seem to download the new package (I was not able to track that in the log of the build.sh process. However, in the $EXIST_HOME/extensions/modules/libs/ there was new fop.jar present (not sure of what version).
As for $EXIST_HOME/extensions/modules/build.xml, this is what differs most from the original article I mentioned. There is no specific information about the version of FOP used.
After starting the app and trying to produce a pdf, I got this error from Jetty:
HTTP ERROR 500
Problem accessing /exist/apps/karolinum-x/modules/create-ebook.xq. Reason:
Server Error
Caused by:
javax.servlet.ServletException: An error occurred: org.apache.fop.apps.FopFactory.newInstance()Lorg/apache/fop/apps/FopFactory;
at org.exist.http.servlets.EXistServlet.doGet(EXistServlet.java:237)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:735)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:503)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:575)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:429)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.Dispatcher.forward(Dispatcher.java:229)
at org.eclipse.jetty.server.Dispatcher.forward(Dispatcher.java:103)
at org.exist.http.urlrewrite.Forward.doRewrite(Forward.java:50)
at org.exist.http.urlrewrite.XQueryURLRewrite.doRewrite(XQueryURLRewrite.java:557)
at org.exist.http.urlrewrite.XQueryURLRewrite.service(XQueryURLRewrite.java:357)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1496)
at de.betterform.agent.web.filter.XFormsFilter.doFilter(XFormsFilter.java:171)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1476)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:533)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:429)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:154)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
at org.eclipse.jetty.server.Server.handle(Server.java:370)
at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:494)
at org.eclipse.jetty.server.AbstractHttpConnection.headerComplete(AbstractHttpConnection.java:971)
at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.headerComplete(AbstractHttpConnection.java:1033)
at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:644)
at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:235)
at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:696)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:53)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NoSuchMethodError: org.apache.fop.apps.FopFactory.newInstance()Lorg/apache/fop/apps/FopFactory;
at org.exist.xquery.modules.xslfo.ApacheFopProcessorAdapter.<init>(ApacheFopProcessorAdapter.java:25)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at org.exist.xquery.modules.xslfo.XSLFOModule.getProcessorAdapter(XSLFOModule.java:85)
at org.exist.xquery.modules.xslfo.RenderFunction.eval(RenderFunction.java:135)
at org.exist.xquery.BasicFunction.eval(BasicFunction.java:70)
at org.exist.xquery.InternalFunctionCall.eval(InternalFunctionCall.java:56)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:100)
at org.exist.xquery.LetExpr.eval(LetExpr.java:142)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.UserDefinedFunction.eval(UserDefinedFunction.java:155)
at org.exist.xquery.DynamicCardinalityCheck.eval(DynamicCardinalityCheck.java:74)
at org.exist.xquery.Atomize.eval(Atomize.java:67)
at org.exist.xquery.DynamicTypeCheck.eval(DynamicTypeCheck.java:61)
at org.exist.xquery.FunctionCall.evalFunction(FunctionCall.java:330)
at org.exist.xquery.FunctionCall.eval(FunctionCall.java:234)
at org.exist.xquery.LetExpr.eval(LetExpr.java:142)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:100)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:58)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:102)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:58)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:65)
at org.exist.xquery.LetExpr.eval(LetExpr.java:189)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.AbstractExpression.eval(AbstractExpression.java:71)
at org.exist.xquery.PathExpr.eval(PathExpr.java:267)
at org.exist.xquery.AbstractExpression.eval(AbstractExpression.java:71)
at org.exist.xquery.XQuery.execute(XQuery.java:280)
at org.exist.xquery.XQuery.execute(XQuery.java:200)
at org.exist.http.RESTServer.executeXQuery(RESTServer.java:1498)
at org.exist.http.RESTServer.doGet(RESTServer.java:509)
at org.exist.http.servlets.EXistServlet.doGet(EXistServlet.java:204)
... 45 more
Caused by:
java.lang.NoSuchMethodError: org.apache.fop.apps.FopFactory.newInstance()Lorg/apache/fop/apps/FopFactory;
at org.exist.xquery.modules.xslfo.ApacheFopProcessorAdapter.<init>(ApacheFopProcessorAdapter.java:25)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at org.exist.xquery.modules.xslfo.XSLFOModule.getProcessorAdapter(XSLFOModule.java:85)
at org.exist.xquery.modules.xslfo.RenderFunction.eval(RenderFunction.java:135)
at org.exist.xquery.BasicFunction.eval(BasicFunction.java:70)
at org.exist.xquery.InternalFunctionCall.eval(InternalFunctionCall.java:56)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:100)
at org.exist.xquery.LetExpr.eval(LetExpr.java:142)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.UserDefinedFunction.eval(UserDefinedFunction.java:155)
at org.exist.xquery.DynamicCardinalityCheck.eval(DynamicCardinalityCheck.java:74)
at org.exist.xquery.Atomize.eval(Atomize.java:67)
at org.exist.xquery.DynamicTypeCheck.eval(DynamicTypeCheck.java:61)
at org.exist.xquery.FunctionCall.evalFunction(FunctionCall.java:330)
at org.exist.xquery.FunctionCall.eval(FunctionCall.java:234)
at org.exist.xquery.LetExpr.eval(LetExpr.java:142)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:100)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:58)
at org.exist.xquery.ConditionalExpression.eval(ConditionalExpression.java:102)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:58)
at org.exist.xquery.DebuggableExpression.eval(DebuggableExpression.java:65)
at org.exist.xquery.LetExpr.eval(LetExpr.java:189)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.LetExpr.eval(LetExpr.java:187)
at org.exist.xquery.BindingExpression.eval(BindingExpression.java:165)
at org.exist.xquery.AbstractExpression.eval(AbstractExpression.java:71)
at org.exist.xquery.PathExpr.eval(PathExpr.java:267)
at org.exist.xquery.AbstractExpression.eval(AbstractExpression.java:71)
at org.exist.xquery.XQuery.execute(XQuery.java:280)
at org.exist.xquery.XQuery.execute(XQuery.java:200)
at org.exist.http.RESTServer.executeXQuery(RESTServer.java:1498)
at org.exist.http.RESTServer.doGet(RESTServer.java:509)
at org.exist.http.servlets.EXistServlet.doGet(EXistServlet.java:204)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:735)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:503)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:575)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:429)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.Dispatcher.forward(Dispatcher.java:229)
at org.eclipse.jetty.server.Dispatcher.forward(Dispatcher.java:103)
at org.exist.http.urlrewrite.Forward.doRewrite(Forward.java:50)
at org.exist.http.urlrewrite.XQueryURLRewrite.doRewrite(XQueryURLRewrite.java:557)
at org.exist.http.urlrewrite.XQueryURLRewrite.service(XQueryURLRewrite.java:357)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1496)
at de.betterform.agent.web.filter.XFormsFilter.doFilter(XFormsFilter.java:171)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1476)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:533)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:429)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:154)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
at org.eclipse.jetty.server.Server.handle(Server.java:370)
at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:494)
at org.eclipse.jetty.server.AbstractHttpConnection.headerComplete(AbstractHttpConnection.java:971)
at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.headerComplete(AbstractHttpConnection.java:1033)
at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:644)
at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:235)
at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:696)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:53)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)
at java.lang.Thread.run(Thread.java:745)
What am I missing? I would expect fop.jar figures there as a library only and build.sh could fix everything else, if necessary.

the upcoming v3.0 release supports FOP2.1 ; this should work OK, though a few issues are reported.
Note that Apache changed the directory structure for FOP a bit, you might want to verify the new location....
see
https://github.com/eXist-db/exist/commits/develop/extensions/modules/build.xml
https://github.com/eXist-db/exist/blob/develop/extensions/build.properties#L159

Related

JPA Entity is too big to be persisted

The entity Test have a List of Questions Entity, Question itself have a List of Answers entities. With Cascade.All enabled on all of them.
when I try to persist a new Test Entity with say 10 Question, it gets persisted just fine. However Once I bump The number of questions to 20. It's prints an exception saysing webContanier is not started.
Exception:
[2018-06-18T10:32:31.882+0000] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=31 _ThreadName=http-listener-1(5)] [timeMillis: 1529317951882] [levelValue: 900] [[
A system exception occurred during an invocation on EJB TestDao, method: public java.lang.Object com.derbyware.qtube.dao.AbstractFacade.create(java.lang.Object)]]
[2018-06-18T10:32:31.883+0000] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=31 _ThreadName=http-listener-1(5)] [timeMillis: 1529317951883] [levelValue: 900] [[
javax.ejb.EJBException
at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:503)
at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
at com.sun.proxy.$Proxy390.create(Unknown Source)
at com.derbyware.qtube.dao.__EJB31_Generated__TestDao__Intf____Bean__.create(Unknown Source)
at com.derbyware.qtube.beans.NewTestBean.finish(NewTestBean.java:842)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.el.parser.AstValue.invoke(AstValue.java:289)
at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
at javax.faces.component.UICommand.broadcast(UICommand.java:315)
at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:318)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: This web container has not yet been started
at org.glassfish.web.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1674)
at org.glassfish.web.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1633)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2563)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1907)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2141)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2077)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2062)
at com.sun.gjc.spi.base.PreparedStatementWrapper.executeUpdate(PreparedStatementWrapper.java:125)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:890)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeNoSelect(DatabaseAccessor.java:962)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:631)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:298)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.insertObject(DatasourceCallQueryMechanism.java:377)
at org.eclipse.persistence.internal.queries.StatementQueryMechanism.insertObject(StatementQueryMechanism.java:165)
at org.eclipse.persistence.internal.queries.StatementQueryMechanism.insertObject(StatementQueryMechanism.java:180)
at org.eclipse.persistence.internal.queries.DatabaseQueryMechanism.insertObjectForWrite(DatabaseQueryMechanism.java:489)
at org.eclipse.persistence.queries.InsertObjectQuery.executeCommit(InsertObjectQuery.java:80)
at org.eclipse.persistence.queries.InsertObjectQuery.executeCommitWithChangeSet(InsertObjectQuery.java:90)
at org.eclipse.persistence.internal.queries.DatabaseQueryMechanism.executeWriteWithChangeSet(DatabaseQueryMechanism.java:301)
at org.eclipse.persistence.queries.WriteObjectQuery.executeDatabaseQuery(WriteObjectQuery.java:58)
at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:798)
at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWorkObjectLevelModifyQuery(ObjectLevelModifyQuery.java:108)
at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWork(ObjectLevelModifyQuery.java:85)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1737)
at org.eclipse.persistence.internal.sessions.CommitManager.commitNewObjectsForClassWithChangeSet(CommitManager.java:226)
at org.eclipse.persistence.internal.sessions.CommitManager.commitAllObjectsForClassWithChangeSet(CommitManager.java:193)
at org.eclipse.persistence.internal.sessions.CommitManager.commitAllObjectsWithChangeSet(CommitManager.java:138)
at org.eclipse.persistence.internal.sessions.AbstractSession.writeAllObjectsWithChangeSet(AbstractSession.java:4207)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabase(UnitOfWorkImpl.java:1441)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabaseWithPreBuiltChangeSet(UnitOfWorkImpl.java:1587)
at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.writeChanges(RepeatableWriteUnitOfWork.java:452)
at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:863)
at com.sun.enterprise.container.common.impl.EntityManagerWrapper.flush(EntityManagerWrapper.java:437)
at com.derbyware.qtube.dao.AbstractFacade.create(AbstractFacade.java:18)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at sun.reflect.GeneratedMethodAccessor5111.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at sun.reflect.GeneratedMethodAccessor5112.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
... 50 more
]]
The method:
private boolean persistingTest;
public String finish() {
if(!persistingTest){
persistingTest = true;
// set status
String redirectURL = redirectReachedRestrictionSubmit();
if(redirectURL != null){
return redirectURL;
}
test.setCreationDate(LocalDate.now());
test.setOwner((User) getContext().getExternalContext().getSessionMap().get("user"));
test.setQuestions(new ArrayList<>(questions.values()));
// persist using dao
// return test.xhtml?id=ID of Test
test = testDao.create(test);
BigInteger forwardID = test.getId();
//Re-Initiliaze
initiliazeBean();
return TEST + "&id=" + forwardID;
}
return null;
}
testDao.create(test); calls EntityManager.persist
I fix it by persisting each Question first then apply relationships. Is there a way to tell JPA to handle an entity with a little bit more of data?
Thanks.

Hibernate Envers error with Enum Mapping

Has anyone ever used hibernate envers with PostgreSQL ?? Because I'm using and mapping the enum with #Enumerated (EnumType.STRING) it gives an error saying that it can not resolve.
Hibernate Core 5.2.17.Final
Hibernate Envers 5.2.17.Final
Hibernate Validator 6.0.9.Final
PostgreSQL Driver 42.2.2
DBMS PostgreSQL 10
Dear you are experiencing the following error when deploying the system in Glassfish 5.0:
Grave: Exception while invoking class org.glassfish.persistence.jpa.JPADeployer prepare method
Grave: Exception while invoking class org.glassfish.javaee.full.deployment.EarDeployer prepare method
Grave: org.glassfish.deployment.common.DeploymentException: org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:182)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:540)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:536)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:535)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:558)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:557)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1465)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:110)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1847)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1723)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:463)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:168)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassCastException: org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.mapEnumerationType(BasicMetadataGenerator.java:84)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.applyNestedType(BasicMetadataGenerator.java:126)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.addBasic(BasicMetadataGenerator.java:50)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValueInFirstPass(AuditMetadataGenerator.java:225)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValue(AuditMetadataGenerator.java:350)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addProperties(AuditMetadataGenerator.java:384)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.generateFirstPass(AuditMetadataGenerator.java:689)
at org.hibernate.envers.configuration.internal.EntitiesConfigurator.configure(EntitiesConfigurator.java:95)
at org.hibernate.envers.boot.internal.EnversServiceImpl.doInitialize(EnversServiceImpl.java:154)
at org.hibernate.envers.boot.internal.EnversServiceImpl.initialize(EnversServiceImpl.java:118)
at org.hibernate.envers.boot.internal.AdditionalJaxbMappingProducerImpl.produceAdditionalMappings(AdditionalJaxbMappingProducerImpl.java:99)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:288)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:861)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:888)
at org.hibernate.jpa.HibernatePersistenceProvider.__createContainerEntityManagerFactory(HibernatePersistenceProvider.java:151)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:41002)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
... 40 more
Grave: Exception while preparing the app
Grave: Exception during lifecycle processing
org.glassfish.deployment.common.DeploymentException: org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:182)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:540)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:536)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:535)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:558)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:557)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1465)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:110)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1847)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1723)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:463)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:168)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassCastException: org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.mapEnumerationType(BasicMetadataGenerator.java:84)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.applyNestedType(BasicMetadataGenerator.java:126)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.addBasic(BasicMetadataGenerator.java:50)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValueInFirstPass(AuditMetadataGenerator.java:225)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValue(AuditMetadataGenerator.java:350)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addProperties(AuditMetadataGenerator.java:384)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.generateFirstPass(AuditMetadataGenerator.java:689)
at org.hibernate.envers.configuration.internal.EntitiesConfigurator.configure(EntitiesConfigurator.java:95)
at org.hibernate.envers.boot.internal.EnversServiceImpl.doInitialize(EnversServiceImpl.java:154)
at org.hibernate.envers.boot.internal.EnversServiceImpl.initialize(EnversServiceImpl.java:118)
at org.hibernate.envers.boot.internal.AdditionalJaxbMappingProducerImpl.produceAdditionalMappings(AdditionalJaxbMappingProducerImpl.java:99)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:288)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:861)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:888)
at org.hibernate.jpa.HibernatePersistenceProvider.__createContainerEntityManagerFactory(HibernatePersistenceProvider.java:151)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:41002)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
... 40 more
Grave: Exception while preparing the app : org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
java.lang.ClassCastException: org.hibernate.type.SerializableType cannot be cast to org.hibernate.type.CustomType
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.mapEnumerationType(BasicMetadataGenerator.java:84)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.applyNestedType(BasicMetadataGenerator.java:126)
at org.hibernate.envers.configuration.internal.metadata.BasicMetadataGenerator.addBasic(BasicMetadataGenerator.java:50)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValueInFirstPass(AuditMetadataGenerator.java:225)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addValue(AuditMetadataGenerator.java:350)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.addProperties(AuditMetadataGenerator.java:384)
at org.hibernate.envers.configuration.internal.metadata.AuditMetadataGenerator.generateFirstPass(AuditMetadataGenerator.java:689)
at org.hibernate.envers.configuration.internal.EntitiesConfigurator.configure(EntitiesConfigurator.java:95)
at org.hibernate.envers.boot.internal.EnversServiceImpl.doInitialize(EnversServiceImpl.java:154)
at org.hibernate.envers.boot.internal.EnversServiceImpl.initialize(EnversServiceImpl.java:118)
at org.hibernate.envers.boot.internal.AdditionalJaxbMappingProducerImpl.produceAdditionalMappings(AdditionalJaxbMappingProducerImpl.java:99)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:288)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:861)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:888)
at org.hibernate.jpa.HibernatePersistenceProvider.__createContainerEntityManagerFactory(HibernatePersistenceProvider.java:151)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:41002)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:540)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:536)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:535)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:558)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:557)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1465)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:110)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1847)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1723)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:463)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:168)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:745)

This is actually already been reported to us in HHH-12396 and we have a fix currently pending validation by the reporter. This appears to be an isolated issue with how GlassFish handles its class loaders on GlassFish v4 and v5 that isn't exhibited by any other enterprise server.

EclipseLink: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax

I have a web application developed in JSF with a set of entities and facade sessions, all generated with Neatbeans wizard tools. All of them, by now, are working perfectly, but the most recent entity I tried to import is getting this exception when I try to use any of the named queries in the entity.
Here is the stack trace of the exception:
Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'key, presenca FROM presenca_keys' at line 1
Error Code: 1064
Call: SELECT id, key, presenca FROM presenca_keys
Query: ReadAllQuery(referenceClass=PresencaKeys sql="SELECT id, key, presenca FROM presenca_keys")
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:682)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
at org.eclipse.persistence.sessions.server.ServerSession.executeCall(ServerSession.java:570)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelectCall(DatasourceCallQueryMechanism.java:299)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.selectAllRows(DatasourceCallQueryMechanism.java:694)
at org.eclipse.persistence.internal.queries.ExpressionQueryMechanism.selectAllRowsFromTable(ExpressionQueryMechanism.java:2738)
at org.eclipse.persistence.internal.queries.ExpressionQueryMechanism.selectAllRows(ExpressionQueryMechanism.java:2691)
at org.eclipse.persistence.queries.ReadAllQuery.executeObjectLevelReadQuery(ReadAllQuery.java:495)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.executeDatabaseQuery(ObjectLevelReadQuery.java:1168)
at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.execute(ObjectLevelReadQuery.java:1127)
at org.eclipse.persistence.queries.ReadAllQuery.execute(ReadAllQuery.java:403)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.executeInUnitOfWork(ObjectLevelReadQuery.java:1215)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1751)
at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:258)
at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:469)
at sessions.AbstractFacade.findAll(AbstractFacade.java:54)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at sun.reflect.GeneratedMethodAccessor834.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at sun.reflect.GeneratedMethodAccessor839.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
at com.sun.proxy.$Proxy426.findAll(Unknown Source)
at sessions.__EJB31_Generated__PresencaKeysFacade__Intf____Bean__.findAll(Unknown Source)
at beans.AtaController.checkCertification(AtaController.java:1076)
at beans.AtaController.persist(AtaController.java:693)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.el.ELUtil.invokeMethod(ELUtil.java:332)
at javax.el.BeanELResolver.invoke(BeanELResolver.java:537)
at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:256)
at com.sun.el.parser.AstValue.invoke(AstValue.java:283)
at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
at javax.faces.component.UICommand.broadcast(UICommand.java:315)
at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at service.LoginFilter.doFilter(LoginFilter.java:41)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'key, presenca FROM presenca_keys' at line 1
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.Util.getInstance(Util.java:386)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1053)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4120)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4052)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2503)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2664)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2794)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:2155)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:2322)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeSelect(DatabaseAccessor.java:1007)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:642)
... 110 more
Warning: A system exception occurred during an invocation on EJB PresencaKeysFacade, method: public java.util.List sessions.AbstractFacade.findAll()
Warning: javax.ejb.EJBException
at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:503)
at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
at com.sun.proxy.$Proxy426.findAll(Unknown Source)
at sessions.__EJB31_Generated__PresencaKeysFacade__Intf____Bean__.findAll(Unknown Source)
at beans.AtaController.checkCertification(AtaController.java:1076)
at beans.AtaController.persist(AtaController.java:693)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.el.ELUtil.invokeMethod(ELUtil.java:332)
at javax.el.BeanELResolver.invoke(BeanELResolver.java:537)
at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:256)
at com.sun.el.parser.AstValue.invoke(AstValue.java:283)
at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
at javax.faces.component.UICommand.broadcast(UICommand.java:315)
at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at service.LoginFilter.doFilter(LoginFilter.java:41)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'key, presenca FROM presenca_keys' at line 1
Error Code: 1064
Call: SELECT id, key, presenca FROM presenca_keys
Query: ReadAllQuery(referenceClass=PresencaKeys sql="SELECT id, key, presenca FROM presenca_keys")
at org.eclipse.persistence.internal.jpa.QueryImpl.getDetailedException(QueryImpl.java:378)
at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:260)
at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:469)
at sessions.AbstractFacade.findAll(AbstractFacade.java:54)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at sun.reflect.GeneratedMethodAccessor834.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at sun.reflect.GeneratedMethodAccessor839.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
... 59 more
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'key, presenca FROM presenca_keys' at line 1
Error Code: 1064
Call: SELECT id, key, presenca FROM presenca_keys
Query: ReadAllQuery(referenceClass=PresencaKeys sql="SELECT id, key, presenca FROM presenca_keys")
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:682)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
at org.eclipse.persistence.sessions.server.ServerSession.executeCall(ServerSession.java:570)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelectCall(DatasourceCallQueryMechanism.java:299)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.selectAllRows(DatasourceCallQueryMechanism.java:694)
at org.eclipse.persistence.internal.queries.ExpressionQueryMechanism.selectAllRowsFromTable(ExpressionQueryMechanism.java:2738)
at org.eclipse.persistence.internal.queries.ExpressionQueryMechanism.selectAllRows(ExpressionQueryMechanism.java:2691)
at org.eclipse.persistence.queries.ReadAllQuery.executeObjectLevelReadQuery(ReadAllQuery.java:495)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.executeDatabaseQuery(ObjectLevelReadQuery.java:1168)
at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.execute(ObjectLevelReadQuery.java:1127)
at org.eclipse.persistence.queries.ReadAllQuery.execute(ReadAllQuery.java:403)
at org.eclipse.persistence.queries.ObjectLevelReadQuery.executeInUnitOfWork(ObjectLevelReadQuery.java:1215)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1751)
at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:258)
... 90 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'key, presenca FROM presenca_keys' at line 1
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.Util.getInstance(Util.java:386)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1053)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4120)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4052)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2503)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2664)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2794)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:2155)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:2322)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeSelect(DatabaseAccessor.java:1007)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:642)
... 110 more
Named queries for the class PresencaKeys:
#NamedQueries({
#NamedQuery(name = "PresencaKeys.findAll", query = "SELECT p FROM PresencaKeys p")
, #NamedQuery(name = "PresencaKeys.findById", query = "SELECT p FROM PresencaKeys p WHERE p.id = :id")
, #NamedQuery(name = "PresencaKeys.findByKey", query = "SELECT p FROM PresencaKeys p WHERE p.key = :key")
, #NamedQuery(name = "PresencaKeys.findByPresenca", query = "SELECT p FROM PresencaKeys p WHERE p.presenca = :presenca")})
The facade session class:
#Stateless
public class PresencaKeysFacade extends AbstractFacade<PresencaKeys> {
#PersistenceContext(unitName = "SINTS_MAPU")
private EntityManager em;
#Override
protected EntityManager getEntityManager() {
return em;
}
public PresencaKeysFacade() {
super(PresencaKeys.class);
}
public PresencaKeys getByPresenca(Presenca presenca)
{
TypedQuery query = em.createNamedQuery("PresencaKeys.findByPresenca", PresencaKeys.class);
query.setParameter("presenca", presenca);
return returnSingleValue(query);
}
}
I would appreciate any clue of what is wrong. Thanks in advance

key is a reserved keyword in SQL, hence the error about invalid SQL
Sadly some JPA providers (EclipseLink, Hibernate) don't seem to quote these keywords for you, so you either have to rename your fields (!) or you have to specify the column name (using #Column for example) to explicitly put quote characters around the keyword (ugh). Other JPA providers do this for you so you don't have to think about it.

Deploy War File in Glassfish Fails

I am trying to deploy some SmartGWT apps. They all use HSQLDB for persistence. They all run fine when using Super Dev Mode in Eclipse. They all fail similarly when I try to deploy them to Glassfish. This is the log I got from one attempt:
[36.267][glassfish 4.1][SEVERE][log4j:WARN No appenders could be found for logger (org.springframework.web.context.ContextLoader).]
[36.267][glassfish 4.1][SEVERE][log4j:WARN Please initialize the log4j system properly.]
[36.267][glassfish 4.1][SEVERE][log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.]
[38.616][glassfish 4.1][SEVERE][AS-WEB-CORE-00174][javax.enterprise.web.core][Startup of context /BMSimulator failed due to previous errors]
[38.617][glassfish 4.1][SEVERE][AS-WEB-CORE-00175][javax.enterprise.web.core][Exception during cleanup after start failed
org.apache.catalina.LifecycleException: Manager has not yet been started
at org.apache.catalina.session.StandardManager.stop(StandardManager.java:935)
at org.apache.catalina.core.StandardContext.stop(StandardContext.java:6133)
at com.sun.enterprise.web.WebModule.stop(WebModule.java:720)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5950)
at com.sun.enterprise.web.WebModule.start(WebModule.java:691)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:1041)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:1024)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:747)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2286)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1932)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:139)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:122)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:291)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:352)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:500)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:275)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:133)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:365)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
]
[38.618][glassfish 4.1][SEVERE][AS-WEB-CORE-00108][javax.enterprise.web.core][ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: java.lang.NullPointerException
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5954)
at com.sun.enterprise.web.WebModule.start(WebModule.java:691)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:1041)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:1024)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:747)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2286)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1932)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:139)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:122)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:291)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:352)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:500)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:275)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:133)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:365)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
at java.util.Hashtable.put(Hashtable.java:459)
at org.hsqldb.persist.HsqlProperties.setProperty(Unknown Source)
at org.hsqldb.persist.HsqlProperties.argArrayToProps(Unknown Source)
at org.hsqldb.server.Server.main(Unknown Source)
at co.focuss.bmsimulator.server.listener.HSQLServletContextListener.contextInitialized(HSQLServletContextListener.java:58)
at org.apache.catalina.core.StandardContext.contextListenerStart(StandardContext.java:5394)
at com.sun.enterprise.web.WebModule.contextListenerStart(WebModule.java:743)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5932)
... 74 more
]
[38.620][glassfish 4.1][SEVERE][javax.enterprise.system.tools.deployment.common][Exception while invoking class com.sun.enterprise.web.WebApplication start method
java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:168)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:122)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:291)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:352)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:500)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:275)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:133)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:365)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
]
[38.620][glassfish 4.1][SEVERE][NCLS-CORE-00026][javax.enterprise.system.core][Exception during lifecycle processing
java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:168)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:122)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:291)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:352)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:500)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:275)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:133)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:365)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:745)
]
[38.621][glassfish 4.1][SEVERE][javax.enterprise.system.core][Exception while loading the app]
[38.621][glassfish 4.1][SEVERE][AS-WEB-GLUE-00192][javax.enterprise.web][Undeployment failed for context /BMSimulator]
[38.633][glassfish 4.1][SEVERE][javax.enterprise.system.core][Exception while loading the app : java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: java.lang.NullPointerException]
What can be causing the problems?

Your servlet context listener initialiser co.focuss.bmsimulator.server.listener.HSQLServletContextListener is passing a null pointer to the bootstrap of the hsqldb the stack frames below are causing the problems.
Caused by: java.lang.NullPointerException
at java.util.Hashtable.put(Hashtable.java:459)
at org.hsqldb.persist.HsqlProperties.setProperty(Unknown Source)
at org.hsqldb.persist.HsqlProperties.argArrayToProps(Unknown Source)
at org.hsqldb.server.Server.main(Unknown Source)
at co.focuss.bmsimulator.server.listener.HSQLServletContextListener.contextInitialized(HSQLServletContextListener.java:58)

Abandoned connection pool using Springboot with Postgres

I have a Springboot application (using embedded Undertow server) with Postgres DB. All of a sudden, I have been getting the below exception:
08:24:20.969 [Tomcat JDBC Pool Cleaner[713338599:1446366120966]] WARN o.a.t.j.p.ConnectionPool - Connection has been abandoned PooledConnection[org.postgresql.jdbc4.Jdbc4Connection#1396256b]:java.lang.Exception
at org.apache.tomcat.jdbc.pool.ConnectionPool.getThreadDump(ConnectionPool.java:1052)
at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:768)
at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:617)
at org.apache.tomcat.jdbc.pool.ConnectionPool.getConnection(ConnectionPool.java:186)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.getConnection(DataSourceProxy.java:127)
at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:139)
at org.hibernate.internal.AbstractSessionImpl$NonContextualJdbcConnectionAccess.obtainConnection(AbstractSessionImpl.java:380)
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:228)
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.getConnection(LogicalConnectionImpl.java:171)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.connection(StatementPreparerImpl.java:63)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:162)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:186)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:160)
at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1885)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1862)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1839)
at org.hibernate.loader.Loader.doQuery(Loader.java:910)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:355)
at org.hibernate.loader.Loader.doList(Loader.java:2554)
at org.hibernate.loader.Loader.doList(Loader.java:2540)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2370)
at org.hibernate.loader.Loader.list(Loader.java:2365)
at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:497)
at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:387)
at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:236)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1264)
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:103)
at org.hibernate.jpa.internal.QueryImpl.list(QueryImpl.java:573)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:449)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:362)
at com.sun.proxy.$Proxy114.getResultList(Unknown Source)
at org.springframework.data.jpa.repository.query.JpaQueryExecution$CollectionExecution.doExecute(JpaQueryExecution.java:110)
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:74)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:98)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:89)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:421)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:381)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$DefaultMethodInvokingMethodInterceptor.invoke(RepositoryFactorySupport.java:512)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodIntercceptor.invoke(CrudMethodMetadataPostProcessor.java:122)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy124.findByCarrierIdAndRetailerIdAndTrackingId(Unknown Source)
at com.mypkg.MyClass.java(...)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:777)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:706)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:943)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:877)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:966)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:857)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:842)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at io.undertow.servlet.handlers.ServletHandler.handleRequest(ServletHandler.java:85)
at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:130)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:60)
at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:132)
at io.undertow.servlet.handlers.FilterHandler.handleRequest(FilterHandler.java:85)
at io.undertow.servlet.handlers.security.ServletSecurityRoleHandler.handleRequest(ServletSecurityRoleHandler.java:61)
at io.undertow.servlet.handlers.ServletDispatchingHandler.handleRequest(ServletDispatchingHandler.java:36)
at io.undertow.servlet.handlers.security.SSLInformationAssociationHandler.handleRequest(SSLInformationAssociationHandler.java:131)
at io.undertow.servlet.handlers.security.ServletAuthenticationCallHandler.handleRequest(ServletAuthenticationCallHandler.java:56)
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43)
at io.undertow.security.handlers.AbstractConfidentialityHandler.handleRequest(AbstractConfidentialityHandler.java:45)
at io.undertow.servlet.handlers.security.ServletConfidentialityConstraintHandler.handleRequest(ServletConfidentialityConstraintHandler.java:63)
at io.undertow.security.handlers.AuthenticationMechanismsHandler.handleRequest(AuthenticationMechanismsHandler.java:58)
at io.undertow.servlet.handlers.security.CachedAuthenticatedSessionHandler.handleRequest(CachedAuthenticatedSessionHandler.java:70)
at io.undertow.security.handlers.SecurityInitialHandler.handleRequest(SecurityInitialHandler.java:76)
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43)
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43)
at io.undertow.servlet.handlers.ServletInitialHandler.handleFirstRequest(ServletInitialHandler.java:261)
at io.undertow.servlet.handlers.ServletInitialHandler.dispatchRequest(ServletInitialHandler.java:247)
at io.undertow.servlet.handlers.ServletInitialHandler.access$000(ServletInitialHandler.java:76)
at io.undertow.servlet.handlers.ServletInitialHandler$1.handleRequest(ServletInitialHandler.java:166)
at io.undertow.server.Connectors.executeRootHandler(Connectors.java:197)
at io.undertow.server.HttpServerExchange$1.run(HttpServerExchange.java:759)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
08:24:21.226 [XNIO-1 task-1] WARN o.h.e.j.s.SqlExceptionHelper - SQL Error: 0, SQLState: 08006
08:24:21.456 [XNIO-1 task-1] ERROR o.h.e.j.s.SqlExceptionHelper - An I/O error occurred while sending to the backend.
08:24:21.706 [XNIO-1 task-1] WARN o.h.e.j.s.SqlExceptionHelper - SQL Error: 0, SQLState: null
08:24:21.941 [XNIO-1 task-1] ERROR o.h.e.j.s.SqlExceptionHelper - Connection has already been closed.
08:24:22.186 [XNIO-1 task-1] ERROR io.undertow.request - UT005023: Exception handling request to /trackingimg/ulta/ups
org.springframework.web.util.NestedServletException: Request processing failed; nested exception is org.springframework.orm.jpa.JpaSystemException: could not inspect JDBC autocommit mode; nested exception is org.hibernate.exception.GenericJDBCException: could not inspect JDBC autocommit mode
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:978) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:857) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687) ~[javax.servlet-api-3.1.0.jar!/:3.1.0]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:842) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) ~[javax.servlet-api-3.1.0.jar!/:3.1.0]
at io.undertow.servlet.handlers.ServletHandler.handleRequest(ServletHandler.java:85) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:130) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88) ~[spring-web-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:60) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:132) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.FilterHandler.handleRequest(FilterHandler.java:85) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.security.ServletSecurityRoleHandler.handleRequest(ServletSecurityRoleHandler.java:61) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.ServletDispatchingHandler.handleRequest(ServletDispatchingHandler.java:36) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.security.SSLInformationAssociationHandler.handleRequest(SSLInformationAssociationHandler.java:131) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.security.ServletAuthenticationCallHandler.handleRequest(ServletAuthenticationCallHandler.java:56) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.security.handlers.AbstractConfidentialityHandler.handleRequest(AbstractConfidentialityHandler.java:45) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.security.ServletConfidentialityConstraintHandler.handleRequest(ServletConfidentialityConstraintHandler.java:63) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.security.handlers.AuthenticationMechanismsHandler.handleRequest(AuthenticationMechanismsHandler.java:58) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.security.CachedAuthenticatedSessionHandler.handleRequest(CachedAuthenticatedSessionHandler.java:70) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.security.handlers.SecurityInitialHandler.handleRequest(SecurityInitialHandler.java:76) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.ServletInitialHandler.handleFirstRequest(ServletInitialHandler.java:261) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.ServletInitialHandler.dispatchRequest(ServletInitialHandler.java:247) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.ServletInitialHandler.access$000(ServletInitialHandler.java:76) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.servlet.handlers.ServletInitialHandler$1.handleRequest(ServletInitialHandler.java:166) ~[undertow-servlet-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.server.Connectors.executeRootHandler(Connectors.java:197) [undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at io.undertow.server.HttpServerExchange$1.run(HttpServerExchange.java:759) [undertow-core-1.1.1.Final.jar!/:1.1.1.Final]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_25]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_25]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_25]
Caused by: org.springframework.orm.jpa.JpaSystemException: could not inspect JDBC autocommit mode; nested exception is org.hibernate.exception.GenericJDBCException: could not inspect JDBC autocommit mode
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.convertHibernateAccessException(HibernateJpaDialect.java:303) ~[spring-orm-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:214) ~[spring-orm-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:417) ~[spring-orm-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:59) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:213) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:147) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodIntercceptor.invoke(CrudMethodMetadataPostProcessor.java:122) ~[spring-data-jpa-1.7.1.RELEASE.jar!/:na]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at com.sun.proxy.$Proxy124.findByCarrierIdAndRetailerIdAndTrackingId(Unknown Source) ~[na:na]
at com.mypkg.MyClass.java(...)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_25]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_25]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_25]
at java.lang.reflect.Method.invoke(Method.java:483) ~[na:1.8.0_25]
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221) ~[spring-web-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137) ~[spring-web-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:777) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:706) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:943) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:877) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:966) ~[spring-webmvc-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
... 32 common frames omitted
Caused by: org.hibernate.exception.GenericJDBCException: could not inspect JDBC autocommit mode
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:54) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:112) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.isAutoCommit(LogicalConnectionImpl.java:325) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.engine.transaction.internal.TransactionCoordinatorImpl.afterNonTransactionalQuery(TransactionCoordinatorImpl.java:199) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.internal.SessionImpl.afterOperation(SessionImpl.java:503) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1269) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:103) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.jpa.internal.QueryImpl.list(QueryImpl.java:573) ~[hibernate-entitymanager-4.3.7.Final.jar!/:4.3.7.Final]
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:449) ~[hibernate-entitymanager-4.3.7.Final.jar!/:4.3.7.Final]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_25]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_25]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_25]
at java.lang.reflect.Method.invoke(Method.java:483) ~[na:1.8.0_25]
at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:362) ~[spring-orm-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at com.sun.proxy.$Proxy114.getResultList(Unknown Source) ~[na:na]
at org.springframework.data.jpa.repository.query.JpaQueryExecution$CollectionExecution.doExecute(JpaQueryExecution.java:110) ~[spring-data-jpa-1.7.1.RELEASE.jar!/:na]
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:74) ~[spring-data-jpa-1.7.1.RELEASE.jar!/:na]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:98) ~[spring-data-jpa-1.7.1.RELEASE.jar!/:na]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:89) ~[spring-data-jpa-1.7.1.RELEASE.jar!/:na]
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:421) ~[spring-data-commons-1.9.1.RELEASE.jar!/:na]
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:381) ~[spring-data-commons-1.9.1.RELEASE.jar!/:na]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.data.repository.core.support.RepositoryFactorySupport$DefaultMethodInvokingMethodInterceptor.invoke(RepositoryFactorySupport.java:512) ~[spring-data-commons-1.9.1.RELEASE.jar!/:na]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136) ~[spring-tx-4.1.4.RELEASE.jar!/:4.1.4.RELEASE]
... 54 common frames omitted
Caused by: java.sql.SQLException: Connection has already been closed.
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:117) ~[tomcat-jdbc-8.0.15.jar!/:na]
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108) ~[tomcat-jdbc-8.0.15.jar!/:na]
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81) ~[tomcat-jdbc-8.0.15.jar!/:na]
at com.sun.proxy.$Proxy61.getAutoCommit(Unknown Source) ~[na:na]
at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.isAutoCommit(LogicalConnectionImpl.java:322) ~[hibernate-core-4.3.7.Final.jar!/:4.3.7.Final]
... 80 common frames omitted
I looked at few posts online and have made necessary configurations. This is my properties file:
spring.datasource.url=...
spring.datasource.driverClassName=org.postgresql.Driver
spring.datasource.username=...
spring.datasource.password=...
spring.datasource.remove-abandoned=true
spring.datasource.remove-abandoned-timeout=60
spring.datasource.log-abandoned=true
spring.datasource.connection-timeout=120
spring.datasource.max-active=50
spring.datasource.max-idle=25
spring.datasource.min-idle=10
spring.datasource.initial-size=10
spring.datasource.max-wait=30
# Check for database connection validation.
spring.datasource.validation-query=SELECT 1
spring.datasource.test-on-borrow=true
spring.jpa.database-platform=org.hibernate.dialect.PostgreSQLDialect
spring.datasource.platform = postgresql
spring.jpa.show-sql=true
spring.jpa.hibernate.ddl-auto=none
spring.jpa.generate-ddl=false
It was working properly till now. I have tried restarting my application as well. What could be the problem here?
Thanks.

I thing you already answered your question:
Connection has been abandoned <<-- on the top of your exception stack
and
spring.datasource.remove-abandoned-timeout=60
this means if the session takes more than 60 seconds the DB connection is closed and the session fails.
Check why the session takes so long time.

It looks like you are opening a Hibernate Session and not closing it so a later use which is not the right of using it. The Hibernate Session is a lightweight object that should be created as it needed and closed shortly after (for example, just for a time of a HTTP request).
But anyway the whole story should be handled by Spring. So possibly you are using Spring a wrong way. Try to provide the code for your service classes where you use JPA.

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