Run Theano on Python 3.5 - windows-7-x64

Previously I have working installation of bleeding edge Theano version on Anaconda Python 2.7 x 64 on Windows 7 x64.
I tried to upgrade to bleeding edge Theano version on Python 3.5 x64 on Windows x64 and encountered error during test example compilation:
Problem occurred during compilation with the command line below:
C:\TDM-GCC-64\bin\g++.exe -shared -g -march=ivybridge -mmmx -mno-3dnow -msse -msse2 -msse3 -mssse3 -mno-sse4a -mcx16 -msahf -mno-movbe -maes -mno-sha -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mavx -mno-avx2 -msse4.2 -msse4.1 -mno-lzcnt -mno-rtm -mno-hle -mrdrnd -mf16c -mfsgsbase -mno-rdseed -mno-prfchw -mno-adx -mfxsr -mxsave -mxsaveopt -mno-avx512f -mno-avx512er -mno-avx512cd -mno-avx512pf -mno-prefetchwt1 -mno-clflushopt -mno-xsavec -mno-xsaves -mno-avx512dq -mno-avx512bw -mno-avx512vl -mno-avx512ifma -mno-avx512vbmi -mno-clwb -mno-pcommit --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=6144 -mtune=ivybridge -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -DMS_WIN64 -IC:\Anaconda3\lib\site-packages\numpy\core\include -IC:\Anaconda3\include -IC:\Anaconda3\lib\site-packages\theano\gof -o C:\Users\s.nechuiviter\AppData\Local\Theano\compiledir_Windows-7-6.1.7601-SP1-Intel64_Family_6_Model_58_Stepping_9_GenuineIntel-3.5.1-64\lazylinker_ext\lazylinker_ext.pyd C:\Users\s.nechuiviter\AppData\Local\Theano\compiledir_Windows-7-6.1.7601-SP1-Intel64_Family_6_Model_58_Stepping_9_GenuineIntel-3.5.1-64\lazylinker_ext\mod.cpp -LC:\Anaconda3\libs -LC:\Anaconda3 -lpython35
===============================
C:\Anaconda3\libs/python35.lib: error adding symbols: File in wrong format
collect2.exe: error: ld returned 1 exit status
Traceback (most recent call last):
File "C:\Anaconda3\lib\site-packages\theano\gof\lazylinker_c.py", line 75, in <module>
raise ImportError()
ImportError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Anaconda3\lib\site-packages\theano\gof\lazylinker_c.py", line 92, in <module>
raise ImportError()
ImportError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "D:/GIT_MIRROR/SRP_DLA/Python_DLA/tests/theano_test.py", line 4, in <module>
import theano.tensor as T
File "C:\Anaconda3\lib\site-packages\theano\__init__.py", line 64, in <module>
from theano.compile import (
File "C:\Anaconda3\lib\site-packages\theano\compile\__init__.py", line 10, in <module>
from theano.compile.function_module import *
File "C:\Anaconda3\lib\site-packages\theano\compile\function_module.py", line 22, in <module>
import theano.compile.mode
File "C:\Anaconda3\lib\site-packages\theano\compile\mode.py", line 12, in <module>
import theano.gof.vm
File "C:\Anaconda3\lib\site-packages\theano\gof\vm.py", line 646, in <module>
from . import lazylinker_c
File "C:\Anaconda3\lib\site-packages\theano\gof\lazylinker_c.py", line 127, in <module>
preargs=args)
File "C:\Anaconda3\lib\site-packages\theano\gof\cmodule.py", line 2204, in compile_str
(status, compile_stderr.replace('\n', '. ')))
.
How to fix this?
It seems libpython conflicts with Python 3.5?

Related

Python Imports Keep Failing

I recently wrote a package which is on 1.2.9 but when trying to import it using pip install rolimons Python tries to import 1.2.9 which fails and moves on until version 1.1.3 which is the only version that doesn't error out.
Here is the error:
ERROR: Command errored out with exit status 1:
command: /home/runner/rolimonspy-test/venv/bin/python3 /home/runner/rolimonspy-test/venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmp89bhulpc
cwd: /tmp/pip-install-baj2a_r_/rolimons_41a3df9c7f414766a57996a21dc8cd26
Complete output (16 lines):
Traceback (most recent call last):
File "/home/runner/rolimonspy-test/venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in <module>
main()
File "/home/runner/rolimonspy-test/venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/home/runner/rolimonspy-test/venv/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "/tmp/pip-build-env-029qi198/overlay/lib/python3.8/site-packages/poetry/core/masonry/api.py", line 41, in prepare_metadata_for_build_wheel
builder = WheelBuilder(poetry)
File "/tmp/pip-build-env-029qi198/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/wheel.py", line 56, in __init__
super().__init__(poetry, executable=executable)
File "/tmp/pip-build-env-029qi198/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/builder.py", line 83, in __init__
self._module = Module(
File "/tmp/pip-build-env-029qi198/overlay/lib/python3.8/site-packages/poetry/core/masonry/utils/module.py", line 69, in __init__
raise ModuleOrPackageNotFound(
poetry.core.masonry.utils.module.ModuleOrPackageNotFound: No file/folder found for package python-template
More information about the structure and package here:

AttributeError: module 'pyspark.sql.utils' has no attribute 'convert_exception'

Hi i have an issue with deltalake im trying to import
from delta import *
but i got the following error
anyone has any idea how to solve it please share it thanks in advance
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.7/dist-packages/delta/__init__.py", line 17, in <module>
from delta.tables import DeltaTable
File "/usr/local/lib/python3.7/dist-packages/delta/tables.py", line 17, in <module>
import delta.exceptions # noqa: F401; pylint: disable=unused-variable
File "/usr/local/lib/python3.7/dist-packages/delta/exceptions.py", line 152, in <module>
_patch_convert_exception()
File "/usr/local/lib/python3.7/dist-packages/delta/exceptions.py", line 140, in _patch_convert_exception
convert_sql_exception = utils.convert_exception
AttributeError: module 'pyspark.sql.utils' has no attribute 'convert_exception'
>>> from delta import *
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.7/dist-packages/delta/__init__.py", line 17, in <module>
from delta.tables import DeltaTable
File "/usr/local/lib/python3.7/dist-packages/delta/tables.py", line 17, in <module>
import delta.exceptions # noqa: F401; pylint: disable=unused-variable
File "/usr/local/lib/python3.7/dist-packages/delta/exceptions.py", line 152, in <module>
_patch_convert_exception()
File "/usr/local/lib/python3.7/dist-packages/delta/exceptions.py", line 140, in _patch_convert_exception
convert_sql_exception = utils.convert_exception
AttributeError: module 'pyspark.sql.utils' has no attribute 'convert_exception'
I had the same problem, I used the delta version 0.6.0 and work!!!
I had the same the issue in Glue jupyter notebook. Then I added following before I start the session:
%glue_version 3.0 %additional_python_modules graphframes==0.6
%extra_jars s3://s3-path/graphframes.jar,s3://s3-path/delta-core_2.12-1.0.0.jar
%extra_py_files s3://s3-path/graphframes.jar,s3://s3-path/delta-core_2.12-1.0.0.jar

Python errors with telnetlib

I have multiple errors with python's library telnetlib.
When I use it from the repl, here is the code I enter:
import telnetlib
telnetlib.Telnet("<an_ip>", <a_port>) as tn:
write("SYST:BEEP")
It retrurns the following error:
Traceback (most recent call last):
File "<stdin>", line 2, in <module>
File "/usr/local/lib/python3.6/telnetlib.py", line 287, in write
if IAC in buffer:
TypeError: 'in <string>' requires string as left operand, not bytes
Now, something which is strange is when I execute the following script:
import telnetlib
def beep(tn):
"""Beep the pulse generator."""
tn.write("SYST:BEEP\n")
# Main for test purpose
if __name__ == "__main__":
with telnetlib.Telnet("<ip>", <port>) as tn:
beep(tn)
I have the following error and I have it each time I import telnetlib...
raceback (most recent call last):
File "test.py", line 1, in <module>
import telnetlib
File "/usr/lib/python3.7/telnetlib.py", line 37, in <module>
import socket
File "/usr/lib/python3.7/socket.py", line 53, in <module>
from enum import IntEnum, IntFlag
File "/usr/lib/python3.7/enum.py", line 2, in <module>
from types import MappingProxyType, DynamicClassAttribute
File "/home/vpecatte/dev/soft/soft/types.py", line 1, in <module>
from typing import *
File "/usr/lib/python3.7/typing.py", line 28, in <module>
import re as stdlib_re # Avoid confusion with the re we export.
File "/usr/lib/python3.7/re.py", line 143, in <module>
class RegexFlag(enum.IntFlag):
AttributeError: module 'enum' has no attribute 'IntFlag'
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 53, in apport_excepthook
if not enabled():
File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 24, in enabled
import re
File "/usr/lib/python3.7/re.py", line 122, in <module>
import enum
File "/usr/lib/python3.7/enum.py", line 2, in <module>
from types import MappingProxyType, DynamicClassAttribute
File "/home/vpecatte/dev/soft/soft/types.py", line 1, in <module>
from typing import *
File "/usr/lib/python3.7/typing.py", line 31, in <module>
from types import WrapperDescriptorType, MethodWrapperType, MethodDescriptorType
ImportError: cannot import name 'WrapperDescriptorType' from 'types' (/home/vpecatte/dev/soft/soft/types.py)
Original exception was:
Traceback (most recent call last):
File "pulse_generator.py", line 1, in <module>
import telnetlib
File "/usr/lib/python3.7/telnetlib.py", line 37, in <module>
import socket
File "/usr/lib/python3.7/socket.py", line 53, in <module>
from enum import IntEnum, IntFlag
File "/usr/lib/python3.7/enum.py", line 2, in <module>
from types import MappingProxyType, DynamicClassAttribute
File "/home/vpecatte/dev/soft/soft/types.py", line 1, in <module>
from typing import *
File "/usr/lib/python3.7/typing.py", line 28, in <module>
import re as stdlib_re # Avoid confusion with the re we export.
File "/usr/lib/python3.7/re.py", line 143, in <module>
class RegexFlag(enum.IntFlag):
AttributeError: module 'enum' has no attribute 'IntFlag'
I use python v3.7.5. I replaced correct informations by , .
Thank you for your help.
Looks like you have installed your own types module in /home/vpecatte/dev/soft/soft/types.py which conflicts with the Python built-in types module. The best solution is probably to rename that types module.

RuntimeWarning while importing scipy.stats

While importing the scipy.stats I got following error, how to resolve this error
my versions are:
'3.7.3 (default, Mar 27 2019, 17:13:21) [MSC v.1915 64 bit (AMD64)]'
Anaconda version: 2019.03 Build: py37_0
import scipy.stats as stats
Traceback (most recent call last):
File "<ipython-input-2-7e938f6e949f>", line 1, in <module>
import scipy.stats as stats
File "C:\ProgramData\Anaconda3\lib\site-packages\scipy\stats\__init__.py", line 367, in <module>
from .stats import *
File "C:\ProgramData\Anaconda3\lib\site-packages\scipy\stats\stats.py", line 172, in <module>
import scipy.special as special
File "C:\ProgramData\Anaconda3\lib\site-packages\scipy\special\__init__.py", line 641, in <module>
from ._ufuncs import *
File "__init__.pxd", line 918, in init scipy.special._ufuncs
RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility.
Expected 192 from C header, got 216 from PyObject

ModuleNotFoundError: No module named '_posixsubprocess' when creating virtual enviroment

i'm trying to set a virtual enviroment with:
$ python3 -m venv cv2
But when trying it, i'm getting this exception:
Traceback (most recent call last):
File "/usr/lib/python3.6/runpy.py", line 183, in _run_module_as_main
mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
File "/usr/lib/python3.6/runpy.py", line 142, in _get_module_details
return _get_module_details(pkg_main_name, error)
File "/usr/lib/python3.6/runpy.py", line 109, in _get_module_details
__import__(pkg_name)
File "/usr/lib/python3.6/venv/__init__.py", line 10, in <module>
import subprocess
File "/usr/lib/python3.6/subprocess.py", line 136, in <module>
import _posixsubprocess
ModuleNotFoundError: No module named '_posixsubprocess'
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
from apport.fileutils import likely_packaged, get_recent_crashes
File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
from apport.report import Report
File "/usr/lib/python3/dist-packages/apport/report.py", line 12, in <module>
import subprocess, tempfile, os.path, re, pwd, grp, os, time
File "/usr/lib/python3.6/subprocess.py", line 136, in <module>
import _posixsubprocess
ModuleNotFoundError: No module named '_posixsubprocess'
Original exception was:
Traceback (most recent call last):
File "/usr/lib/python3.6/runpy.py", line 183, in _run_module_as_main
mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
File "/usr/lib/python3.6/runpy.py", line 142, in _get_module_details
return _get_module_details(pkg_main_name, error)
File "/usr/lib/python3.6/runpy.py", line 109, in _get_module_details
__import__(pkg_name)
File "/usr/lib/python3.6/venv/__init__.py", line 10, in <module>
import subprocess
File "/usr/lib/python3.6/subprocess.py", line 136, in <module>
import _posixsubprocess
ModuleNotFoundError: No module named '_posixsubprocess'
I've trying reinstalling subprocess32, but i haven't solved anything. I'm using Python 3.6.3 Anaconda on Ubuntu 18.04.1 LTS.
Any suggestions?