My PyCharm freezes after running any code in .ipynb (Jupyter Notebook) file.
i.e. the cell starts running and after that PyCharm doesnt respond and I have to kill it. No message is shown.
.py scripts are running correctly. Can anyone help?
My versions:
PyCharm Community Edition 2016.2.3 (Ubuntu 16.04)
ipython 5.1.0 py35_0
jupyter 1.0.0 py35_3
notebook 4.2.3 py35_0
It appears that your jupyter kernel is not running.
I have had success by first starting a jupyter notebook from the command line:
$jupyter notebook.
Then go back to the PyCharm jupyter notebook and run a cell. If you get the dialog box to enter the Jupyter Notebook URL, enter the url printed to your command line terminal session after you started the notebook there.
Related
I have installed ipython, jupyter etc using pip in my windows 7 pc. Now I want to open a .pynb file from command line. When I typed 'jupyter notebook' it is showing: 'jupyter' is not a recognized internal or external command ...... Can you tell where is the problem? Can't I open the file from command line or I have to install an IDE like 'pycharm' or 'anaconda'?
Please try the below command:
python -m notebook
This should work without anaconda.
I am trying to use the hidecode tag as shown here, but for some reason, it's not working on my local Jupyter Notebook server. The code remains visible, and no button on the right of the cell is displayed. I even downloaded the same notebook used in the page above, no dice.
I am running Ubuntu 18.04.2 LTS, Jupyter Notebook Server 5.2.2, Python 3.6.7, and IPython 5.5.0. The command I ran to start the server is sudo jupyter notebook --allow-root.
If you need any more info, please let me know. I appreciate any help I can get in figuring this out.
If you want to hide the code, the output or the prompt of your cells you can install the hide_code extension:
https://pypi.org/project/hide_code/0.2.0/
Stop jupyter
Run these commands
pip install hide_code
jupyter nbextension install --py hide_code
jupyter nbextension enable --py hide_code
jupyter serverextension enable --py hide_code
NOTE: I run the first two commands as root and the last two with the same user used to launch jupyter.
Restart jupyter
I found this extension very useful because I needed to print the notebook to a pdf file and all the tools like nbpublish, nbconvert was failing. In this way I can print the notebook directly from the "print" feature of the browser.
I prefer using the ipython enhanced REPL over the python and so am specifying as such in the pyspark command line:
Result: jupyter notebook launched (surprising):
PYSPARK_DRIVER_PYTHON=ipython MASTER="local[*]" $SPARK_HOME/bin/pyspark
This approach was working for several years - but at the present it is causing jupyter notebook to be launched.
That result would make sense if the explicit command notebook were also present:
Result: jupyter notebook launched (expected):
PYSPARK_DRIVER_PYTHON=ipython notebook MASTER="local[*]" $SPARK_HOME/bin/pyspark
Given that the notebook is not specified then why is the notebook launched instead of the REPL ?
Note: when using ipython alone on the command line via
Result: ipython REPL launched (expected):
ipython
the REPL is launched (and not the jupyter notebook).
you might have set PYSPARK_DRIVER_PYTHON_OPTS variable to "notebook". this will cause to open jupyter notebook
Is there a way to open an IPython interactive console in pycharm that is connected to an existing running kernel (similar to "python --existing")?
btw: in case it's relevant, in my case, the running kernel is of a Jupiter notebook...
EDIT: To clarify, my question is NOT about how to open an interactive console in PyCharm. It is about how to connect that interactive console to a an existing running (Jupiter notebook) Kernel.
(tl;dr: Use jupyter console --existing in the PyCharm "Terminal" tool window (not the "Python Console" tool window) to connect to an existing iPython kernel running in a local Jupyter Notebook server.)
I can confirm that the comment by #john-moutafis suggesting ipython console --existing is the right idea. The command gives "WARNING | You likely want to use jupyter console in the future" so I tried that.
I have a project using a conda environment as its interpreter. Jupyter Notebook is installed in the conda environment.
I open the Terminal tool window. It automatically activates the conda environment.
I type jupyter notebook. The notebook server starts and a browser window opens.
I create a notebook in the browser, and execute a cell containing foo = "bar".
In PyCharm, I open another Terminal tool window by clicking the plus sign to the left of the terminal pane.
In the new terminal I type jupyter console --existing, and it starts an ipython console session.
At the prompt I type dir(), and foo is among the results, confirming that I'm attached to the same kernel as the notebook.
I don't know how it picks which kernel to connect to when there are multiple kernels running in the notebook server.
Don't type exit in the iPython session if you plan to continue using the notebook, it shuts down the kernel.
Unfortunately, tools like Debug and "Execute Line/Selection in Console", which are available for the "Python Console" tool window, are not available for the "Terminal" tool window. In fact, because the Terminal tool window is a simple tool, and that's where I've run my commands, this solution isn't very integrated with PyCharm. The terminal opens in the project directory and activates the conda environment, and it's conveniently adjacent to the editors and tools of the IDE, but otherwise there's no connection to PyCharm's tools.
If anyone can successfully attach PyCharm's integrated PyDev debugger to a running kernel, please chime in.
I'm using PyCharm 2016.3 on macOS 10.12.3.
The easiest way for me is just to type %qtconsole in a jupyter notebook cell and run it. A qt console will open already connected to the running kennel. No PyCharm involved.
I recently began using julia, and I would like to use in with IPython Notebook/Jupyter.
So, I installed julia using MacPorts, i.e. sudo port install julia. Following the installation instructions here: https://github.com/JuliaLang/IJulia.jl
After the prompt, I used "Pkg.add("IJulia") to install IJulia.
However, I cannot use Julia with IPython notebook. After opening the notebook with
ipython notebook --profile=julia
the kernel for the julia notebook dies instantly and cannot be restarted.
The error on the Terminal shows:
[I 19:03:19.410 NotebookApp] KernelRestarter: restarting kernel (1/5)
WARNING:root:kernel dc00ae3a-8fa6-4d01-a802-f7845a16a9ba restarted
ERROR: SHA256 not defined
in include at /opt/local/lib/julia/sys.dylib
in process_options at /opt/local/lib/julia/sys.dylib
in _start at /opt/local/lib/julia/sys.dylib
while loading /Users/NAME/.julia/v0.3/IJulia/src/kernel.jl, in expression starting on line 6
I suspect I have installed IJulia incorrectly? How can I solve this?
(The version of julia is julia version 0.3.11. The version of python is Python 2.7.10. The version of ipython is 4.0.0.)
The current stable version of Julia is v0.4.0.
You should download it directly from the Julia homepage (.dmg):
http://julialang.org/downloads/
Having done that, run it and do Pkg.add("IJulia") again.
Then from within Julia do
using IJulia
notebook()
Note that the Jupyter Notebook (the new name for what used to be the IPython Notebook) is run as
jupyter notebook
The --profile julia is no longer necessary and should be removed.
Furthermore, this (jupyter notebook) will only work if you had a previous installation of Jupyter, which seems to be the case. In this case, I suggest you upgrade it with conda, if you installed Anaconda, or with pip.)