How to export mongo data into csv using pymongo? - mongodb

My code :
data = db.get_collection('activity_tracker').find({"companyId" : "527d4b23-347a-4ad2-81d8-dfd66af5631a", 'userEmail':{'$ne':'abc#xyz.in'}})
with open('asdxk.csv', 'w') as outfile:
fields = ['companyId', 'userEmail']
writer = csv.writer(outfile, fields)
for post in data:
writer.writerow([post])
Problem statement :
Using above code I am exporting data to CSV file as a junk but what i want to do is companyID and userEmail details should be export to csv as row and column format. Header name should be companyID and userEmail.


Use mongoexport utility to export the data to csv:
mongoexport -h localhost -d test -c activity_tracker --type=csv
--fields companyId,userEmail
--q '{"companyId":"527d4b23-347a-4ad2-81d8-dfd66af5631a","userEmail":{"$ne":"abc#xyz.in"}}'
--out asdxk.csv

Related

Mongodb Query to CSV dump (mlab hosted mongodb)

I am querying an already populated mlab MongoDB database, and I want to store the resulting multiple documents in one single CSV file.
EDIT: output format of CSV file I hope to get:
uniqueid status date
191b117fcf5c 0 2017-03-01 15:26:28.217000
191b117fcf5c 1 2017-03-01 18:26:28.217000
MongoDB database document format is
{
"_id": {
"$oid": "58b6bcc00bd666355805a3ee"
},
"sensordata": {
"operation": "chgstatus",
"user": {
"status": "1",
"uniqueid": "191b117fcf5c"
}
},
"created_date": {
"date": "2017-03-01 17:51:17.216000"
}
}
Database name:mparking_sensor
collection name: demo
The python code to query is as follows:
# -*- coding: utf-8 -*-
"""
Created on Wed Mar 01 18:55:18 2017
#author: Being_Rohit
"""
import pymongo
uri = 'mongodb://#####:*****#ds157529.mlab.com:57529/mparking_sensor'
client = pymongo.MongoClient(uri)
db = client.get_default_database().demo
print db
results = db.find()
f = open("mytest.csv", "w")
for record in results:
query1 = (record["sensordata"]["user"],record["created_date"])
print query1
print "done"
client.close()
EDIT: output format of query1 I am getting is:
({u'status': u'0', u'uniqueid': u'191b117fcf5c'}, {u'date': u'2017-03-01 17:51:08.263000'})
Does someone know the correct way to dump this data in a .csv file (pandas/or any other means) or some other approach for further prediction based analysis to do on it in future like linear regression?

Mongoexport will do the job for you. It can, uniquely among native MongoDB tools, export in CSV format, limited to a specific set of fields.
Your mongoexport command would be something like this:
mongoexport.exe \
--db mparking_sensor \
--collection demo \
--type=csv \
--fields sensordata.user.uniqueid,sensordata.user.status,created_date
That will export something like the following:
sensordata.user.uniqueid,sensordata.user.status,created_date
191b117fcf5c,0,2017-03-01T15:26:28.217000Z
191b117fcf5c,1,2017-03-01T18:26:28.217000Z

I was trying to export a collection to csv using mlabs 'export collection' they make it harder than it needs to be. So i used https://studio3t.com and connected using the standard MongoDB URI

Import CSV with semicolon separator into MongoDB database

I've just try to import a CSV file (with semicolon ; separator) into a MongoDB database. I managed import with mongoimport -d mydb -c things --type csv --file files.csv --headerline but the result is not what I'm expecting.
The files have that form:
And I get the following result:
But I want to have something like:
{
"_id": ObjectId("57b6e2654bf4a357b679305"),
"geom_x_y" : "48.87792844925 , 2.3664591564",
"circonfere" : "25.0",
"adresse" : "PARIS 10E ARRDT - QUAI DE JEMMAPES",
"hauteurnm" : "5.0",
"espece" : "Acer platanoides",
"varieteouc" : "'Schwedleri'",
"dateplanta" : "31/12/2014"
}

mongoimport unfortunately doesn't allow you to specify your separator character. But it does work automatically with tabs as well as commas. If you know you won't ever have tabs in your input, you could replace all semicolons with tabs and that should then import correctly.
tr ";" "\t" < file.csv | mongoimport --type tsv ...

How to use mongoexport with query script file

I'm trying to follow this tutorial: http://www.ultrabug.fr/tag/mongoexport/
and use a sh file for the query line.
this is my file:
#!/bin/bash
d=`date --date="-3 month"`
echo "{ timeCreated: { "\$lte": $d} }"
this is my mongoexport line:
mongoexport --db game_server --collection GameHistory -query /home/dev/test2.sh --out /home/dev/file.json
I keep getting:
assertion: 16619 code FailedToParse: FailedToParse: Expecting '{': offset:0 of:/home/dev/test2.sh
why? How can I make this work?

I found several errors in your approach, let's examine them one by one.
Date format
MongoDB expects date to be a number or ISO 8601 string.
Unfortunately, unix date utility have no build-in support for this format, so you should use:
d=`date --date="-3 month" -u +"%Y-%m-%dT%H:%M:%SZ"`
Using extended JSON
JSON specification have no support for dates, so you should use MongoDB extended JSON. So, your final query should look like this:
{ "timeCreated": { "$lte": { "$date": "2014-05-12T08:53:29Z" } } }
test.sh output
You messed up with quotation marks. Here is a script example, outputting correct JSON:
#!/bin/bash
d=`date --date="-3 month" -u +"%Y-%m-%dT%H:%M:%SZ"`
echo '{ "timeCreated": { "$lte": { "$date": "'$d'" } } }'
Passing query to mongoexport
mongoexport expects --query to be a JSON string, not .sh script. So, when you're passing file path to --query, mongoexport expects it to be a JSON file.
To fix it you should execute test2.sh yourself and pass resulting string to mongoexport:
mongoexport --db game_server --collection GameHistory \
--query "`./test2.sh`" --out ./test2.json
N.B. Notice " quotation marks around ./test2.sh call. They're telling bash to treat ./test2.sh output as a single parameter, ignoring all inner quotation marks and whitespaces.

You need to add back ticks around a script or command to have it evaluated:
mongoexport --db game_server --collection GameHistory \
-query `/home/dev/test2.sh` --out /home/dev/file.json

Can i use mongoexport --query <file> where file is a list of conditions

I have an array of ids stored in a file, and I want to retrieve their data from the mongdb
so i looked into the mongoexport method. it seems --query option can only accept a json instead read a large json or array from a file. In my case, it is about 4000 ids stored in the file. Is there a solution to this?
I was able to use
mongoexport --db db --collection collection --field name --csv -oout ~/data.csv
but how to read query conditions from a file
for example, for mongoid in rails application, query like this is Data.where(:_id.in => array).
or is it possible to do from mongo shell by executing a javscript file
tks

I believe you can use a javascript to output the array you need.
you can use "printjson" command in your script, for example:
create a script.js javascript file as following:
script.js:
printjson( db.albums.find({_id : 18}, {"images" : 1,"_id":0}).toArray() )
Call hi as follow:
mongo test script.js > out.txt
In my local environment albums collection has the following structure:
db.albums.findOne({"_id":18
{
"_id" : 18,
"images" : [
2926,
5377,
8036,
9023,
10119,
11543,
12305,
12556,
12576,
13753,
14414,
14865,
15193,
15933,
17156,
17314,
17391,
20168,
21705,
22016,
22348,
23036,
23452,
24112,
27086,
27310,
27864,
28092,
29184,
29190,
29250,
29354,
29454,
29563,
30366,
30619,
31390,
31825,
31906,
32339,
32674,
33307,
33844,
37475,
37976,
38717,
38774,
39801,
41369,
41752,
44977,
45384,
45643,
46918,
47069,
50099,
52755,
54314,
54497,
62338,
63438,
63572,
63600,
65631,
66953,
67160,
67369,
69802,
71087,
71127,
71282,
73123,
73201,
73954,
74972,
76279,
77054,
78397,
78645,
78936,
79364,
79707,
83065,
83142,
83568,
84160,
85391,
85443,
85488,
86143,
86240,
86949,
89406,
89846,
92591,
92639,
92655,
93844,
93934,
94987,
95324,
95431,
95817,
95864,
96230,
96975,
97026
]
}
>
, so the output I got was:
$ cat out.txt
MongoDB shell version: 2.2.1
connecting to: test
[
{
"images" : [
2926,
5377,
8036,
9023,
10119,
11543,
12305,
12556,
12576,
13753,
14414,
14865,
15193,
15933,
17156,
17314,
17391,
20168,
21705,
22016,
22348,
23036,
23452,
24112,
27086,
27310,
27864,
28092,
29184,
29190,
29250,
29354,
29454,
29563,
30366,
30619,
31390,
31825,
31906,
32339,
32674,
33307,
33844,
37475,
37976,
38717,
38774,
39801,
41369,
41752,
44977,
45384,
45643,
46918,
47069,
50099,
52755,
54314,
54497,
62338,
63438,
63572,
63600,
65631,
66953,
67160,
67369,
69802,
71087,
71127,
71282,
73123,
73201,
73954,
74972,
76279,
77054,
78397,
78645,
78936,
79364,
79707,
83065,
83142,
83568,
84160,
85391,
85443,
85488,
86143,
86240,
86949,
89406,
89846,
92591,
92639,
92655,
93844,
93934,
94987,
95324,
95431,
95817,
95864,
96230,
96975,
97026
]
}
]
Regards,
Moacy

mongoexport too many options error while creating changelog

trying to use mongoexport to export a csv of the oplog... tried all quote combinations I have read so far...
../mongodb/bin/mongoexport --csv -d local -c oplog.rs -o export.csv -f {op,ns,o._id} -q "{ts: { \"$gte\": Timestamp(1355100998000,1)} , op :{ \"$nin\" : [\"c\",\"n\"]}"
but I keep getting
ERROR: too many positional options
.....
what could be wrong?
After a lot of screwing around I have tried this
q="{op: { \$nin: [\"c\",\"n\"]}}"
mongoexport --csv -d local -c oplog.rs -o export.csv -f {op,ns,o._id} -q "$q"
and this works like a charm.
but still this
q="{ts: { \$gte: Timestamp(1355100998000,1)}, op: { \$nin: [\"c\",\"n\"]}}"
../mongodb/bin/mongoexport --csv --db local --collection oplog.rs -o changelog.csv --fields op,ns -q "$q"
does not work. Output
Assertion: 10340:Failure parsing JSON string near: ts: { $gte
Feel something is wrong with Timestamp()?

So finally this is how it should be done... or how I did it. It is pretty fast tried it on 30000 records takes max 2 seconds.
All thats happening is that I am storing the results in a new collection by using mongo with --eval option
q="db.oplog.rs.find({ ts : { \$gte : Timestamp( $timestamp, 1)}, op : { \$nin : [\"c\",\"n\"] } }, { op : 1 , ns : 1 , \"o._id\" : 1 , h : 1 } ).forEach(function(x){db.changelog.save(x);})"
../mongodb/bin/mongo localhost:27017/local --eval "$q"
and then export it as .csv using mongoexport
../mongodb/bin/mongoexport --csv --db local --collection changelog -o changelog.csv --fields "o._id","op","ns","h"
and removinf the temporary database to support future changelogs
../mongodb/bin/mongo localhost:27017/local --eval 'db.changelog.remove()'