I see that you can use datastore to hold key value pairs, process data in chunks, and pass it to mapreduce. Does this mean that the datastore object in Matlab is like a NoSQL database? If not, how does it differ?
In case of any ambiguity about what characterises a NoSQL database, I am considering as a starting point these characteristics obtained from dba.stackexchange: https://dba.stackexchange.com/a/25/35729
You'll find that NoSQL database have few common characteristics. They
can be roughly divided into a few categories:
key/value stores
Bigtable inspired databases (based on the Google Bigtable paper)
Dynamo inspired databases
distributed databases
document databases
In Matlab you can always import java Classes and use any java library, (with the one difference that there is no multithreading). So typically you won’t find many libraries written in matlab that do the same thing as a java library for this reason. In general I would also say it’s harder to write a library in matlab which may be a factor for the lack of libraries as well.
I think your only option is to use a java library, IMHO is a much better choice anyway because java is so much more popular to programmers working with databases, it will always have better libraries which are maintained. The one drawback is that you can’t implement java interfaces in matlab (correct me if I’m wrong). This can become a massive pain.
So not really, here is a Mongo examples on github https://github.com/HanOostdijk/matlab_mongodb
I've been scouring the MongoDB documentation, Google, Stackoverflow and YouTube... but I still can't seem to understand what a driver is used for in MongoDB.
I do know that different programming language can have one or many different drivers - but why do I need one?
You don't strictly speaking need one, but the alternative is building network packets manually scattered around in your code base... The term 'driver' is a bit irritating, because most people expect some kernel-level program that talks to hardware.
The MongoDB driver is more like an SDK or a helper library that helps you with a number of tasks that you'll almost certainly need to solve when you want to use MongoDB.
In essence, the MongoDB driver does these things:
it implements the MongoDB wire protocol that is used to talk to the database, i.e. it knows what 'messages' the database expects, it knows relevant constants, etc. 'It implements the MongoDB API' if you will.
It also comes with helpers to manage the actual TCP/IP sockets, creating them, resolving replica set addresses, implementing connection pooling, etc.
Next, the drivers contain helpers that make it easier to work with the BSON datatypes from your language, since there normally isn't a 1:1 mapping of types. A mongodb array, for example, could be mapped to an array or some kind of list or set container in most languages; ObjectId and ISODate might need a wrapper, and so on.
Lastly, the driver implements a serializer, that is, a piece of software that can create a copy of an instance 'from the outside', that is, without you having to implement a Serialize() method on each and every class (or whatever concept your language supports) you want to store. Together with 3), this writes the BSON representation of your data.
Serialization in itself isn't trivial, because one quickly has to cope with cyclical references, so a recursive algorithm on a set of unknown properties is required. If that doesn't sound complicated enough, the de-serialization (or hydration) of objects is even more painful, so it's not exactly the type of code that is super rewarding to write, unless it's highly reusable.
I'm sure I forgot something else the drivers do, but I think these are the key pain points they solve. As far as I know, their exact feature set varies from language to language and in some languages, the individual problems might be less or more pronounced, but they generally exist everywhere.
I'm looking for a little assistance in Scala similar to that provided by pyTables. PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data.
Any suggestions?
I had a quick look at pyTables, and I don't think there's anything remotely like it in Scalaland (or indeed Javaland), but we have a few of the ingredients necessary to make it a possibility if you want to invest the time:
scala.Dynamic to do idiomatic selection on data-driven structures
A bunch of graph databases to provide the underlying navigational persistence substrate (I've had acceptable results from OrientDB, which has a better license than most)
PyTables is a python implementation of HDF5 with some added niceties to let you work on it in a pythonic way, and get good indexing support. I'm not sure if there's a package implemented in a similar way in Scala, but you can use the same HFD5 based hierarchical data storageusing the HDF5 implementation in Java: HDF Java
I'd like to find out good and robust MapReduce framework, to be utilized from Scala.
To add to the answer on Hadoop: there are at least two Scala wrappers that make working with Hadoop more palatable.
Scala Map Reduce (SMR): http://scala-blogs.org/2008/09/scalable-language-and-scalable.html
SHadoop: http://jonhnny-weslley.blogspot.com/2008/05/shadoop.html
UPD 5 oct. 11
There is also Scoobi framework, that has awesome expressiveness.
http://hadoop.apache.org/ is language agnostic.
Personally, I've become a big fan of Spark
http://spark-project.org/
You have the ability to do in-memory cluster computing, significantly reducing the overhead you would experience from disk-intensive mapreduce operations.
You may be interested in scouchdb, a Scala interface to using CouchDB.
Another idea is to use GridGain. ScalaDudes have an example of using GridGain with Scala. And here is another example.
A while back, I ran into exactly this problem and ended up writing a little infrastructure to make it easy to use Hadoop from Scala. I used it on my own for a while, but I finally got around to putting it on the web. It's named (very originally) ScalaHadoop.
For a scala API on top of hadoop check out Scoobi, it is still in heavy development but shows a lot of promise. There is also some effort to implement distributed collections on top of hadoop in the Scala incubator, but that effort is not usable yet.
There is also a new scala wrapper for cascading from Twitter, called Scalding.
After looking very briefly over the documentation for Scalding it seems
that while it makes the integration with cascading smoother it still does
not solve what I see as the main problem with cascading: type safety.
Every operation in cascading operates on cascading's tuples (basically a
list of field values with or without a separate schema), which means that
type errors, I.e. Joining a key as a String and key as a Long leads
to run-time failures.
to further jshen's point:
hadoop streaming simply uses sockets. using unix streams, your code (any language) simply has to be able to read from stdin and output tab delimited streams. implement a mapper and if needed, a reducer (and if relevant, configure that as the combiner).
I've added MapReduce implementation using Hadoop on Github with few test cases here: https://github.com/sauravsahu02/MapReduceUsingScala.
Hope that helps. Note that the application is already tested.
Which approach is better: 1) to use a third-party ORM system or 2) manually write DAL and BLL code to work with the database?
1) In one of our projects, we decided using the DevExpress XPO ORM system, and we ran across lots of slight problems that wasted a lot of our time. Amd still from time to time we encounter problems and exceptions that come from this ORM, and we do not have full understanding and control of this "black box".
2) In another project, we decided to write the DAL and BLL from scratch. Although this implied writing boring code many, many times, but this approach proved to be more versatile and flexible: we had full control over the way data was held in the database, how it was obtained from it, etc. And all the bugs could be fixed in a direct and easy way.
Which approach is generally better? Maybe the problem is just with the ORM that we used (DevExpress XPO), and maybe other ORMs are better (such as NHibernate)?
Is it worth using ADO Entiry Framework?
I found that the DotNetNuke CMS uses its own DAL and BLL code. What about other projects?
I would like to get info on your personal experience: which approach do you use in your projects, which is preferable?
Thank you.
My personal experience has been that ORM is usually a complete waste of time.
First, consider the history behind this. Back in the 60s and early 70s, we had these DBMSes using the hierarchical and network models. These were a bit of a pain to use, since when querying them you had to deal with all of the mechanics of retrieval: follow links between records all over the place and deal with the situation when the links weren't the links you wanted (e.g., were pointing in the wrong direction for your particular query). So Codd thought up the idea of a relational DBMS: specify the relationships between things, say in your query only what you want, and let the DBMS deal with figuring out the mechanics of retrieving it. Once we had a couple of good implementations of this, the database guys were overjoyed, everybody switched to it, and the world was happy.
Until the OO guys came along into the business world.
The OO guys found this impedance mismatch: the DBMSes used in business programming were relational, but internally the OO guys stored things with links (references), and found things by figuring out the details of which links they had to follow and following them. Yup: this is essentially the hierarchical or network DBMS model. So they put a lot of (often ingenious) effort into layering that hierarchical/network model back on to relational databases, incidently throwing out many of the advantages given to us by RDBMSes.
My advice is to learn the relational model, design your system around it if it's suitable (it very frequently is), and use the power of your RDBMS. You'll avoid the impedance mismatch, you'll generally find the queries easy to write, and you'll avoid performance problems (such as your ORM layer taking hundreds of queries to do what it ought to be doing in one).
There is a certain amount of "mapping" to be done when it comes to processing the results of a query, but this goes pretty easily if you think about it in the right way: the heading of the result relation maps to a class, and each tuple in the relation is an object. Depending on what further logic you need, it may or may not be worth defining an actual class for this; it may be easy enough just to work through a list of hashes generated from the result. Just go through and process the list, doing what you need to do, and you're done.
Perhaps a little of both is the right fit. You could use a product like SubSonic. That way, you can design your database, generate your DAL code (removing all that boring stuff), use partial classes to extend it with your own code, use Stored Procedures if you want to, and generally get more stuff done.
That's what I do. I find it's the right balance between automation and control.
I'd also point out that I think you're on the right path by trying out different approaches and seeing what works best for you. I think that's ultimately the source for your answer.
Recently I made the decision to use Linq to SQL on a new project, and I really like it. It is lightweight, high-performance, intuitive, and has many gurus at microsoft (and others) that blog about it.
Linq to SQL works by creating a data layer of c# objects from your database. DevExpress XPO works in the opposite direction, creating tables for your C# business objects. The Entity Framework is supposed to work either way. I am a database guy, so the idea of a framework designing the database for me doesn't make much sense, although I can see the attractiveness of that.
My Linq to SQL project is a medium-sized project (hundreds, maybe thousands of users). For smaller projects sometimes I just use SQLCommand and SQLConnection objects, and talk directly to the database, with good results. I have also used SQLDataSource objects as containers for my CRUD, but these seem clunky.
DALs make more sense the larger your project is. If it is a web application, I always use some sort of DAL because they have built-in protections against things like SQL injection attacks, better handling of null values, etc.
I debated whether to use the Entity Framework for my project, since Microsoft says this will be their go-to solution for data access in the future. But EF feels immature to me, and if you search StackOverflow for Entity Framework, you will find several people who are struggling with small, obtuse problems. I suspect version 2 will be much better.
I don't know anything about nHibernate, but there are people out there who love it and would not use anything else.
You might try using NHibernate. Since it's open source, it's not exactly a black box. It is very versatile, and it has many extensibility points for you to plug in your own additional or replacement functionality.
Comment 1:
NHibernate is a true ORM, in that it permits you to create a mapping between your arbitrary domain model (classes) and your arbitrary data model (tables, views, functions, and procedures). You tell it how you want your classes to be mapped to tables, for example, whether this class maps to two joined tables or two classes map to the same table, whether this class property maps to a many-to-many relation, etc. NHibernate expects your data model to be mostly normalized, but it does not require that your data model correspond precisely to your domain model, nor does it generate your data model.
Comment 2:
NHibernate's approach is to permit you to write any classes you like, and then after that to tell NHibernate how to map those classes to tables. There's no special base class to inherit from, no special list class that all your one-to-many properties have to be, etc. NHibernate can do its magic without them. In fact, your business object classes are not supposed to have any dependencies on NHibernate at all. Your business object classes, by themselves, have absolutely no persistence or database code in them.
You will most likely find that you can exercise very fine-grained control over the data-access strategies that NHibernate uses, so much so that NHibernate is likely to be an excellent choice for your complex cases as well. However, in any given context, you are free to use NHibernate or not to use it (in favor of more customized DAL code), as you like, because NHibernate tries not to get in your way when you don't need it. So you can use a custom DAL or DevExpress XPO in one BLL class (or method), and you can use NHibernate in another.
I recently took part in sufficiently large interesting project. I didn't join it from the beginning and we had to support already implemented architecture. Data access to all objects was implemented through stored procedures and automatically generated wrapper-methods on .NET that returned DataTable objects. The development process in such system was really slow and inefficient. We had to write huge stored procedure on PL/SQL for every query, that could be expressed in simple LINQ query. If we had used ORM, we would have implement project several times faster. And I don't see any advantage of such architecture.
I admit, that it is just particular not very successful project, but I made following conclusion: Before refusing to use ORM think twice, do you really need such flexibility and control over database? I think in most cases it isn't worth wasted time and money.
As others explain, there is a fundamental difficulty with ORM's that make it such that no existing solution does a very good job of doing the right thing, most of the time. This Blog Post: The Vietnam Of Computer Science echoes some of my feelings about it.
The executive summary is something along the lines of the assumptions and optimizations that are incompatible between object and relational models. although early returns are good, as the project progresses, the abstractions of the ORM fall short, and the extra overhead of working around it tends to cancel out the successes.
I have used Bold for Delphi four years now. It is great but it is not available anymore for sale and it lacks some features like databinding. ECO the successor has all that.
No I'm not selling ECO-licenses or something but I just think it is a pity that so few people realize what MDD (Model Driven Development) can do. Ability to solve more complex problems in less time and fewer bugs. This is very hard to measure but I have heard something like 5-10 more efficient development. And as I work with it every day I know this is true.
Maybe some traditional developer that is centered around data and SQL say:
"But what about performance?"
"I may loose control of what SQL is run!"
Well...
If you want to load 10000 instances of a table as fast as possible it may be better to use stored procedures, but most application don't do this. Both Bold and ECO use simple SQL queries to load data. Performance is highly dependent of the number of queries to the database to load a certain amount of data. Developer can help by saying this data belong to each other. Load them as effiecent as possible.
The actual queries that is executed can of course be logged to catch any performance problems. And if you really want to use your hyper optimized SQL query this is no problem as long as it don't update the database.
There is many ORM system to choose from, specially if you use dot.net. But honestly it is very very hard to do a good ORM framework. It should be concentrated around the model. If the model change, it should be an easy task to change database and the code dependent of the model. This make it easy to maintain. The cost for making small but many changes is very low. Many developers do the mistake to center around the database and adapt everthing around that. In my opinion this is not the best way to work.
More should try ECO. It is free to use an unlimited time as long the model is no more than 12 classes. You can do a lot with 12 classes!
I suggest you to use Code Smith Tool for creating Nettiers, that is a good option for developer.