Image Rotation in Three Dimensions (Matlab) - matlab

I am trying to rotate a 2D image in Matlab xyz 3-D space. I want to rotate the image I by an angle θ=i about the x-axis. I am doing this by means of multiplication with the rotation matrix (as defined here):
This is my code:
x = linspace(-1,1,size(I,1));
[x0,y0,z0] = meshgrid(x,x,1);
R = [1 0 0; 0 cosd(-i) -sind(-i); 0 sind(-i) cosd(-i)];
xy = [x0(:),y0(:), z0(:)]*R';
X = reshape(xy(:,1),size(x0));
Y = reshape(xy(:,2),size(y0));
Z = reshape(xy(:,3),size(z0));
rotatedI = interp3(x0,y0,z0,I,X,Y,Z, 'nearest');
rotatedI(isnan(rotatedI)) = 0;
The error that I am getting is in the interpolation line:
Error using griddedInterpolant
Interpolation requires at least two sample points in each
dimension.
So what exactly is the problem here and how can I fix it?
I am confused because this code works fine when specialized to two dimensions. Any explanation is much appreciated.

the problem is that your input z grid z0 contains a single value (1), while your desired z grid Z contains multiple values. therefore there is no way to interpolate this single value into multiple ones.
you can assign the input z grid with multiple values so that it will be possible to interpolate.
I = im2double(imread('cameraman.tif'));
I = cat(3,I,I,I);
i = 10;
x = linspace(-1,1,size(I,1));
[x0,y0,z0] = meshgrid(x,x,-1:1); % 3 z values
R = [1 0 0; 0 cosd(-i) -sind(-i); 0 sind(-i) cosd(-i)];
xy = [x0(:),y0(:), z0(:)]*R;
X = reshape(xy(:,1),size(x0));
Y = reshape(xy(:,2),size(y0));
Z = reshape(xy(:,3),size(z0));
rotatedI = interp3(x0,y0,z0,I,X,Y,Z, 'nearest');
rotatedI(isnan(rotatedI)) = 0;
imshow(rotatedI);
in addition, you can use rotx, roty, and rotz to generate rotation matrices easily.
UPDATE
if you want to rotate the image 2D plane in the 3D space you don't need to use interpolation and can do something like:
I = im2double(imread('cameraman.tif'));
i = 10;
x = linspace(-1,1,size(I,1));
[x0,y0,z0] = meshgrid(x,x,-1:1); % 3 z values
[x0,y0,z0] = meshgrid(x,x,1); % 3 z values
R = [1 0 0; 0 cosd(-i) -sind(-i); 0 sind(-i) cosd(-i)];
xy = [x0(:),y0(:), z0(:)]*R;
X = reshape(xy(:,1),size(x0));
Y = reshape(xy(:,2),size(y0));
Z = reshape(xy(:,3),size(z0));
warp(X,Y,Z,I);
grid on

Related

Interpolating coordinates for a specific time

I am trying to interpolate values for X and Y coordinates across time. I am getting NaN's when i try to interpolate for a specific coordinate (X,Y value).
data_to_be_interpolated = final_plot_matrix(:,[1 24:25]);
data_to_be_interpolated(isnan(data_to_be_interpolated)) = 0;
X_coordinate = data_to_be_interpolated(2:end,2);
Y_coordinate = data_to_be_interpolated(2:end,3);
time = data_to_be_interpolated(2:end,1);
coordinates_together = [X_coordinate Y_coordinate];
missing_part = fillmissing(data_to_be_interpolated(2:end,2:3),'linear','SamplePoints',data_to_be_interpolated(2:end,1))
The picture of the matix data to be interpolated is shown below
When i give value 5.6366e+04 (time value) to get the interpolated value for X and Y coordinates, now am getting [0, 0], instead of the X and Y value. Any help will be appreciated.
Try this,
Z = fillmissing(X_coordinate,'linear','SamplePoints',time);
This will interpolate the missing values.
Remember to convert all zeros to NaN.
zt = 1:1:5;
za = [100 50 0 0 20];
za(za == 0) = NaN;
zb = fillmissing(za,'linear','SamplePoints',zt);
zb =
100 50 40 30 20

Saving plotted function as 3d matrix

In matlab I would like to get below defined function's 3D matrix representation. Function is f(x,y) = cos(x + y)^2. Range for x is from 0 to PI, and for y it is also 0 to PI. I wonder if this is possible?
For plotting this function in matlab I usedMuPad matlab's app.
plotfunc3d(cos(x + y)^2, x = 0..PI, y = 0..PI)
Hi with the following script I got the 3D plot of your function.
step = 0.05 ;
x = 1;
y = 1;
image = zeros(length(1:step:pi),length(1:step:pi));
for i =1:step:pi
for j=1:step:pi
image(x,y) = cos(i + j)^2;
x = x+1;
end
x = 1;
y = y + 1;
end
surf(image)

Sequence of dots in matlab and psychotoolbox

How would i display one by one dots that are in a 3x3 matrix such as in the code below?
I would like to have dot1 appears in position [x1,y1] of the grid for a time t1, then dot2 to appears in position [x2,y2] of the grid for a time t2. Only one dot is being shown at each time.
Thanks for help
%grid
dim = 1
[x, y] = meshgrid(-dim:1:dim, -dim:1:dim);
pixelScale = screenYpixels / (dim * 2 + 2);
x = x .* pixelScale;
y = y .* pixelScale;
% Calculate the number of dots
numDots = numel(x);
% Make the matrix of positions for the dots.
dotPositionMatrix = [reshape(x, 1, numDots); reshape(y, 1, numDots)];
% We can define a center for the dot coordinates to be relaitive to.
dotCenter = [xCenter yCenter];
dotColors = [1 0 0];
dotSizes = 20;
Screen('DrawDots', window, dotPositionMatrix,...
dotSizes, dotColors, dotCenter, 2);
I think you want something like this?
%positions of each successive dots:
x_vec = [1,2,3,1,2,3,1,2,3];
y_vec = [1,1,1,2,2,2,3,3,3];
%wait times in sec for each dot:
wait_times = [1,1,2,1,1,2,1,1,2]
dotColor = [1 0 0];
dotSize = 400;
num_dots = length(x_vec);
for i = 1:num_dots
scatter(x_vec(i),y_vec(i),dotSize,dotColor,'filled');
xlim([0,max(x_vec)])
ylim([0,max(y_vec)])
pause(wait_times(i));
end

Matlab figure keeps the history of the previous images

I am working on rotating image manually in Matlab. Each time I run my code with a different image the previous images which are rotated are shown in the Figure. I couldn't figure it out. Any help would be appreciable.
The code is here:
[screenshot]
im1 = imread('gradient.jpg');
[h, w, p] = size(im1);
theta = pi/12;
hh = round( h*cos(theta) + w*abs(sin(theta))); %Round to nearest integer
ww = round( w*cos(theta) + h*abs(sin(theta))); %Round to nearest integer
R = [cos(theta) -sin(theta); sin(theta) cos(theta)];
T = [w/2; h/2];
RT = [inv(R) T; 0 0 1];
for z = 1:p
for x = 1:ww
for y = 1:hh
% Using matrix multiplication
i = zeros(3,1);
i = RT*[x-ww/2; y-hh/2; 1];
%% Nearest Neighbour
i = round(i);
if i(1)>0 && i(2)>0 && i(1)<=w && i(2)<=h
im2(y,x,z) = im1(i(2),i(1),z);
end
end
end
end
x=1:ww;
y=1:hh;
[X, Y] = meshgrid(x,y); % Generate X and Y arrays for 3-D plots
orig_pos = [X(:)' ; Y(:)' ; ones(1,numel(X))]; % Number of elements in array or subscripted array expression
orig_pos_2 = [X(:)'-(ww/2) ; Y(:)'-(hh/2) ; ones(1,numel(X))];
new_pos = round(RT*orig_pos_2); % Round to nearest neighbour
% Check if new positions fall from map:
valid_pos = new_pos(1,:)>=1 & new_pos(1,:)<=w & new_pos(2,:)>=1 & new_pos(2,:)<=h;
orig_pos = orig_pos(:,valid_pos);
new_pos = new_pos(:,valid_pos);
siz = size(im1);
siz2 = size(im2);
% Expand the 2D indices to include the third dimension.
ind_orig_pos = sub2ind(siz2,orig_pos(2*ones(p,1),:),orig_pos(ones(p,1),:), (1:p)'*ones(1,length(orig_pos)));
ind_new_pos = sub2ind(siz, new_pos(2*ones(p,1),:), new_pos(ones(p,1),:), (1:p)'*ones(1,length(new_pos)));
im2(ind_orig_pos) = im1(ind_new_pos);
imshow(im2);
There is a problem with the initialization of im2, or rather, the lack of it. im2 is created in the section shown below:
if i(1)>0 && i(2)>0 && i(1)<=w && i(2)<=h
im2(y,x,z) = im1(i(2),i(1),z);
end
If im2 exists before this code is run and its width or height is larger than the image you are generating the new image will only overwrite the top left corner of your existing im2. Try initializing im2 by adding adding
im2 = zeros(hh, ww, p);
before
for z = 1:p
for x = 1:ww
for y = 1:hh
...
As a bonus it might make your code a little faster since Matlab won't have to resize im2 as it grows in the loop.

How can I plot a 3D-plane in Matlab?

I would like to plot a plane using a vector that I calculated from 3 points where:
pointA = [0,0,0];
pointB = [-10,-20,10];
pointC = [10,20,10];
plane1 = cross(pointA-pointB, pointA-pointC)
How do I plot 'plane1' in 3D?
Here's an easy way to plot the plane using fill3:
points=[pointA' pointB' pointC']; % using the data given in the question
fill3(points(1,:),points(2,:),points(3,:),'r')
grid on
alpha(0.3)
You have already calculated the normal vector. Now you should decide what are the limits of your plane in x and z and create a rectangular patch.
An explanation : Each plane can be characterized by its normal vector (A,B,C) and another coefficient D. The equation of the plane is AX+BY+CZ+D=0. Cross product between two differences between points, cross(P3-P1,P2-P1) allows finding (A,B,C). In order to find D, simply put any point into the equation mentioned above:
D = -Ax-By-Cz;
Once you have the equation of the plane, you can take 4 points that lie on this plane, and draw the patch between them.
normal = cross(pointA-pointB, pointA-pointC); %# Calculate plane normal
%# Transform points to x,y,z
x = [pointA(1) pointB(1) pointC(1)];
y = [pointA(2) pointB(2) pointC(2)];
z = [pointA(3) pointB(3) pointC(3)];
%Find all coefficients of plane equation
A = normal(1); B = normal(2); C = normal(3);
D = -dot(normal,pointA);
%Decide on a suitable showing range
xLim = [min(x) max(x)];
zLim = [min(z) max(z)];
[X,Z] = meshgrid(xLim,zLim);
Y = (A * X + C * Z + D)/ (-B);
reOrder = [1 2 4 3];
figure();patch(X(reOrder),Y(reOrder),Z(reOrder),'b');
grid on;
alpha(0.3);
Here's what I came up with:
function [x, y, z] = plane_surf(normal, dist, size)
normal = normal / norm(normal);
center = normal * dist;
tangents = null(normal') * size;
res(1,1,:) = center + tangents * [-1;-1];
res(1,2,:) = center + tangents * [-1;1];
res(2,2,:) = center + tangents * [1;1];
res(2,1,:) = center + tangents * [1;-1];
x = squeeze(res(:,:,1));
y = squeeze(res(:,:,2));
z = squeeze(res(:,:,3));
end
Which you would use as:
normal = cross(pointA-pointB, pointA-pointC);
dist = dot(normal, pointA)
[x, y, z] = plane_surf(normal, dist, 30);
surf(x, y, z);
Which plots a square of side length 60 on the plane in question
I want to add to the answer given by Andrey Rubshtein, his code works perfectly well except at B=0. Here is the edited version of his code
Below Code works when A is not 0
normal = cross(pointA-pointB, pointA-pointC);
x = [pointA(1) pointB(1) pointC(1)];
y = [pointA(2) pointB(2) pointC(2)];
z = [pointA(3) pointB(3) pointC(3)];
A = normal(1); B = normal(2); C = normal(3);
D = -dot(normal,pointA);
zLim = [min(z) max(z)];
yLim = [min(y) max(y)];
[Y,Z] = meshgrid(yLim,zLim);
X = (C * Z + B * Y + D)/ (-A);
reOrder = [1 2 4 3];
figure();patch(X(reOrder),Y(reOrder),Z(reOrder),'r');
grid on;
alpha(0.3);
Below Code works when C is not 0
normal = cross(pointA-pointB, pointA-pointC);
x = [pointA(1) pointB(1) pointC(1)];
y = [pointA(2) pointB(2) pointC(2)];
z = [pointA(3) pointB(3) pointC(3)];
A = normal(1); B = normal(2); C = normal(3);
D = -dot(normal,pointA);
xLim = [min(x) max(x)];
yLim = [min(y) max(y)];
[Y,X] = meshgrid(yLim,xLim);
Z = (A * X + B * Y + D)/ (-C);
reOrder = [1 2 4 3];
figure();patch(X(reOrder),Y(reOrder),Z(reOrder),'r');
grid on;
alpha(0.3);