Why won't my breed walk? - netlogo

Question

I am building a model population within a bioreactor, building on a basic tutorial telling how to eat, reproduce, and die, etc. While tinkering, my turtles stopped walking. I suspect it has to do with how to ask the different breeds to do things?
Edit: For some reason my contaminants aren't "wheels" either
turtles-own [ energy ]
patches-own [ nutrition ]
breed [ Xanthomonas Xanthomona ]
breed [ contaminants contaminant ]
globals
[ xanthan biomass ]
to setup
clear-all
setup-patches
set-default-shape Xanthomonas "bug"
set-default-shape contaminants "wheel"
crt num-Xanthomonas
[set color yellow
set energy 10
setxy random-xcor random-ycor
]
foul
determine-biomass
reset-ticks
;; begins defining a procedure named "setup"
;; resets the world to an initial, empty state
;; creates 100 turtles, they start out standing at the origin 0,0
;; set default shape so I don't have to tell it every time
;; A turtle's color variable is random until specified
;; setxy command with next two numbers as inputs
;; chooses random reporters for allowable x and y coordinates
End
to setup-patches
ask patches
[ set pcolor green
set nutrition 50
]
;; every patch starts with 50 nutrition, the color indicates it for us
end
to foul
set-default-shape contaminants "wheel"
if Contamination?
[ crt num-contaminants
[ set color red
setxy random-xcor random-ycor
]
compete ]
end
to go
if ticks >= 2000 [ stop ]
if count turtles > 2000 [stop]
if count turtles = 0 [stop]
feed
move-turtles
ask turtles
[eat-glucose]
ask Xanthomonas
[reproduce]
check-death
tick
end
to determine-biomass
ifelse Contamination?
[set biomass num-Xanthomonas + num-contaminants
]
[set biomass num-Xanthomonas ]
end
to move-turtles
;; says that each turtle should run the commands in the brackets
;; random doesn't include the number you give it as a possible result
;; uses a reporter, each turtle picks a random whole number between 0 and 359
;; makes the turtle move forward one step
;;specify what you're defining will lose 1 energy per step
ask Xanthomonas
[ right random 360
forward 1
set energy energy - 1 ]
end
to Feed
if Continuous-feed?
[ ask patches
[if random 100 < 3
[set pcolor green
set nutrition nutrition + 50
] ] ]
end
to eat-glucose
ask Xanthomonas
[ if pcolor = green
[ set energy energy + 10
set nutrition nutrition - 50
set pcolor gray
set biomass biomass + 1
] ]
ifelse show-energy?
[ set label energy ]
[ set label "" ]
;;ask turtles before "if"
;;if when true, and only then will the turtle run the commands inside the brackets (otherwise it skips them)
;;true/false questions, if true, will do first set of brackets
;;false means turtle runs commands in second set of bracket
;;energy (elements) will default to zero
end
to reproduce
ask Xanthomonas
[ if energy > 50
[set energy energy - 50
set xanthan xanthan + 1
hatch-Xanthomonas 1
[set biomass biomass + 1
rt random-float 360 fd 1
] ] ]
end
to check-death
ask Xanthomonas
[ if energy < 0
[ die ]
]
end
to reinoculate
ask patches [
if random 100 < 10
[ set pcolor green
]
]
end
to Contaminate
crt num-contaminants
[ set color red
setxy random-xcor random-ycor
]
end
to compete
ask contaminants
[ if energy > 50
[set energy energy - 50
set xanthan xanthan + 1
hatch-contaminants 1
[ set color red
set biomass biomass + 1
rt random-float 360 fd 1
] ] ]
end

Answer 1

okay, your basic problem is the crt command. This is short for create-turtles. You have two breeds here and you have defined them. However, when you create the turtles, you are not telling NetLogo which breed to create.
What this means is that you need to make a couple of minor changes to specify the breed. If you look in the dictionary, you will see the command is create-<breed>. Where you have crt num-Xanthomonas, change it to create-Xanthomonas num-Xanthomonas and similarly where you create the contaminants.