Difference between string and character vector in Matlab 2015 [duplicate] - matlab

What is the difference between string and character class in MATLAB?
a = 'AX'; % This is a character.
b = string(a) % This is a string.

The documentation suggests:
There are two ways to represent text in MATLAB®. You can store text in character arrays. A typical use is to store short pieces of text as character vectors. And starting in Release 2016b, you can also store multiple pieces of text in string arrays. String arrays provide a set of functions for working with text as data.
This is how the two representations differ:
Element access. To represent char vectors of different length, one had to use cell arrays, e.g. ch = {'a', 'ab', 'abc'}. With strings, they can be created in actual arrays: str = [string('a'), string('ab'), string('abc')].
However, to index characters in a string array directly, the curly bracket notation has to be used:
str{3}(2) % == 'b'
Memory use. Chars use exactly two bytes per character. strings have overhead:
a = 'abc'
b = string('abc')
whos a b
returns
Name Size Bytes Class Attributes
a 1x3 6 char
b 1x1 132 string

The best place to start for understanding the difference is the documentation. The key difference, as stated there:
A character array is a sequence of characters, just as a numeric array is a sequence of numbers. A typical use is to store short pieces of text as character vectors, such as c = 'Hello World';.
A string array is a container for pieces of text. String arrays provide a set of functions for working with text as data. To convert text to string arrays, use the string function.
Here are a few more key points about their differences:
They are different classes (i.e. types): char versus string. As such they will have different sets of methods defined for each. Think about what sort of operations you want to do on your text, then choose the one that best supports those.
Since a string is a container class, be mindful of how its size differs from an equivalent character array representation. Using your example:
>> a = 'AX'; % This is a character.
>> b = string(a) % This is a string.
>> whos
Name Size Bytes Class Attributes
a 1x2 4 char
b 1x1 134 string
Notice that the string container lists its size as 1x1 (and takes up more bytes in memory) while the character array is, as its name implies, a 1x2 array of characters.
They can't always be used interchangeably, and you may need to convert between the two for certain operations. For example, string objects can't be used as dynamic field names for structure indexing:
>> s = struct('a', 1);
>> name = string('a');
>> s.(name)
Argument to dynamic structure reference must evaluate to a valid field name.
>> s.(char(name))
ans =
1

Strings do have a bit of overhead, but still increase by 2 bytes per character. After every 8 characters it increases the size of the variable. The red line is y=2x+127.
figure is created using:
v=[];N=100;
for ct = 1:N
s=char(randi([0 255],[1,ct]));
s=string(s);
a=whos('s');v(ct)=a.bytes;
end
figure(1);clf
plot(v)
xlabel('# characters')
ylabel('# bytes')
p=polyfit(1:N,v,1);
hold on
plot([0,N],[127,2*N+127],'r')
hold off

One important practical thing to note is, that strings and chars behave differently when interacting with square brackets. This can be especially confusing when coming from python. consider following example:
>>['asdf' '123']
ans =
'asdf123'
>> ["asdf" "123"]
ans =
1×2 string array
"asdf" "123"

Related

MATLAB: extract numerical data from alphanumerical table and save as double

I created a list of names of data files, e.g. abc123.xml, abc456.xml, via
list = dir('folder/*.xml').
Matlab starts this out as a 10x1 struct with 5 fields, where the first one is the name. I extracted the needed data with struct2table, so I now got a 10x1 table. I only need the numerical value as 10x1 double. How can I get rid of the alphanumerical stuff and change the data type?
I tried regexp (Undefined function 'regexp' for input arguments of type 'table') and strfind (Conversion to double from table is not possible). Couldn't come up with anything else, as I'm very new to Matlab.
You can extract the name fields and place them in a cell array, use regexp to capture the first string of digits it finds in each name, then use str2double to convert those to numeric values:
strs = regexp({list.name}, '(\d+)', 'once', 'tokens');
nums = str2double([strs{:}]);

Matlab: Function that returns a string with the first n characters of the alphabet

I'd like to have a function generate(n) that generates the first n lowercase characters of the alphabet appended in a string (therefore: 1<=n<=26)
For example:
generate(3) --> 'abc'
generate(5) --> 'abcde'
generate(9) --> 'abcdefghi'
I'm new to Matlab and I'd be happy if someone could show me an approach of how to write the function. For sure this will involve doing arithmetic with the ASCII-codes of the characters - but I've no idea how to do this and which types that Matlab provides to do this.
I would rely on ASCII codes for this. You can convert an integer to a character using char.
So for example if we want an "e", we could look up the ASCII code for "e" (101) and write:
char(101)
'e'
This also works for arrays:
char([101, 102])
'ef'
The nice thing in your case is that in ASCII, the lowercase letters are all the numbers between 97 ("a") and 122 ("z"). Thus the following code works by taking ASCII "a" (97) and creating an array of length n starting at 97. These numbers are then converted using char to strings. As an added bonus, the version below ensures that the array can only go to 122 (ASCII for "z").
function output = generate(n)
output = char(97:min(96 + n, 122));
end
Note: For the upper limit we use 96 + n because if n were 1, then we want 97:97 rather than 97:98 as the second would return "ab". This could be written as 97:(97 + n - 1) but the way I've written it, I've simply pulled the "-1" into the constant.
You could also make this a simple anonymous function.
generate = #(n)char(97:min(96 + n, 122));
generate(3)
'abc'
To write the most portable and robust code, I would probably not want those hard-coded ASCII codes, so I would use something like the following:
output = 'a':char(min('a' + n - 1, 'z'));
...or, you can just generate the entire alphabet and take the part you want:
function str = generate(n)
alphabet = 'a':'z';
str = alphabet(1:n);
end
Note that this will fail with an index out of bounds error for n > 26, so you might want to check for that.
You can use the char built-in function which converts an interger value (or array) into a character array.
EDIT
Bug fixed (ref. Suever's comment)
function [str]=generate(n)
a=97;
% str=char(a:a+n)
str=char(a:a+n-1)
Hope this helps.
Qapla'

Read specific character from cell-array of string

I have an cell-array of dimensions 1x6 like this:
A = {'25_2.mat','25_3.mat','25_4.mat','25_5.mat','25_6.mat','25_7.mat'};
I want to read for example from the A{1} , the number after the '_' i.e 2 for my example
Using cellfun, strfind and str2double
out = cellfun(#(x) str2double(x(strfind(x,'_')+1:strfind(x,'.')-1)),A)
How does it work?
This code simply finds the index of character one number after the occurrence of '_'. Lets call it as start_index. Then finds the character one number lesser than the index of occurrence of '.' character. Lets call it as end_index. Then retrieves all the characters between start_index and end_index. Finally converts those characters to numbers using str2double.
Sample Input:
A = {'2545_23.mat','2_3.mat','250_4.mat','25_51.mat','25_6.mat','25_7.mat'};
Output:
>> out
out =
23 3 4 51 6 7
You can access the contents of the cell by using the curly braces{...}. Once you have access to the contents, you can use indexes to access the elements of the string as you would do with a normal array. For example:
test = {'25_2.mat', '25_3.mat', '25_4.mat', '25_5.mat', '25_6.mat', '25_7.mat'}
character = test{1}(4);
If your string length is variable, you can use strfind to find the index of the character you want.
Assuming the numbers are non-negative integers after the _ sign: use a regular expression with lookbehind, and then convert from string to number:
numbers = cellfun(#(x) str2num(x{1}), regexp(A, '(?<=\_)\d+', 'match'));

Function to split string in matlab and return second number

I have a string and I need two characters to be returned.
I tried with strsplit but the delimiter must be a string and I don't have any delimiters in my string. Instead, I always want to get the second number in my string. The number is always 2 digits.
Example: 001a02.jpg I use the fileparts function to delete the extension of the image (jpg), so I get this string: 001a02
The expected return value is 02
Another example: 001A43a . Return values: 43
Another one: 002A12. Return values: 12
All the filenames are in a matrix 1002x1. Maybe I can use textscan but in the second example, it gives "43a" as a result.
(Just so this question doesn't remain unanswered, here's a possible approach: )
One way to go about this uses splitting with regular expressions (MATLAB's strsplit which you mentioned):
str = '001a02.jpg';
C = strsplit(str,'[a-zA-Z.]','DelimiterType','RegularExpression');
Results in:
C =
'001' '02' ''
In older versions of MATLAB, before strsplit was introduced, similar functionality was achieved using regexp(...,'split').
If you want to learn more about regular expressions (abbreviated as "regex" or "regexp"), there are many online resources (JGI..)
In your case, if you only need to take the 5th and 6th characters from the string you could use:
D = str(5:6);
... and if you want to convert those into numbers you could use:
E = str2double(str(5:6));
If your number is always at a certain position in the string, you can simply index this position.
In the examples you gave, the number is always the 5th and 6th characters in the string.
filename = '002A12';
num = str2num(filename(5:6));
Otherwise, if the formating is more complex, you may want to use a regular expression. There is a similar question matlab - extracting numbers from (odd) string. Modifying the code found there you can do the following
all_num = regexp(filename, '\d+', 'match'); %Find all numbers in the filename
num = str2num(all_num{2}) %Convert second number from str

Understanding the fastaread function in matlab

I searched the documentation about the fastaread function, but I'm still kind of confused about the Sequence part.
So, suppose my file is stored in the file_path location, and fastaread(file_path) will return the data obtained.
fastaread returns two columns, one is with title header and the other one is with title sequence. Then, fastaread(file_path).sequence will return the sequence column? Does that mean that fastaread(file_path).sequence is a column vector?
Actually it's a row vector containing characters.
Example with data provided with Matlab:
p53nt = fastaread('p53nt.txt')
gives a structure with 2 fields: Header and Sequence.
p53nt.Header gives info about the actual sequence:
p53nt.Header
ans =
gi|8400737|ref|NM_000546.2| Homo sapiens tumor protein p53 (Li-Fraumeni syndrome) (TP53), mRNA
while p53nt.Sequence gives a character array of size 1xN:
S = p53nt.Sequence
S =
ACTTGTCATGGCGACTGTCCAGC... And so on
Typing whos S gives this:
Name Size Bytes Class Attributes
S 1x2629 5258 char
So if you want a column vector for some reason, use the colon operator:
S = S(:);
Hope its a bit clearer now!