Need to read .dat files (binary files) from local and write the output in console using scala IDE,
Is it required first convert .dat file to .txt/.csv file then we can read and apply if any transformation and again need to convert .txt/.csv to .dat
tried with some existing code
ref:http://alvinalexander.com/scala/how-to-read-write-binary-files-in-scala-examples
still getting error ,Please share any suggestion
Thanks in advance.
Related
I uploaded about a 3GB .DAT file into vim. The file contains .DAT file in binary and others in the following language:
"0000030801549200000308015492 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109500010957REG0001095REGIPY 1989010100010101Y99991231N YYQ REG R"
I am trying to decipher that raw data into a format that I can use and understand using VIM. Does anyone know how I would do this? Or could point me in the direction to solve this problem? This concept is totally new to me and I am just trying to figure out how to get it done.
Current situation
Currently we have a machine that generates a .bin file of the logging.
Now we use a C# application to read the .bin file and save everything in a .csv file. After that we load in the .csv file in Matlab.
My question
Is there a better/more efficient way of converting the .bin file so we can use it in Matlab?
What I tried
I looked into converting .bin files to .mat files and found out that you can change .mat files to .bin files with this command movefile('FileName.mat', 'FileName.bin') inside Matlab, so I changes the extensions of the files in that command, but that didn't work. (Not that I assumed it would work :P)
I also looked into this command tempRow = fread(fileread, ncols, 'uint=>uint'); but here it only works when you have only integers. And the .bin file I am working with contains bools, int16, reals and udint.
I have a lammps_file.data and I need to convert it to Gromacs files (gro and top) to run my simulations.
Does anyone know how to do this?
Another choice is to convert from lammps to charmm files (psf and pdb). Once I get the charmm files I can just use Topotools to get the gromacs files I need.
Thanks
Indeed, NOW I am trying to do the same myself.
So far, you can use intermol , this should work fine to convert LAMMPS data files to Gromacs files. Once you install intermol, and you ceate a path to the intermol converter, you can use a command like:
python2.7 $conv/convert.py --lmp_in topology.data --gromacs -v
CHECK the format of your data file, I still having problemst to convert it.
If you wish to create the psf file,
you would need VMD (google it), then open the tcl terminal and write :
topo readlammpsdata topology.data full
animate write psf topology.psf
The 1st line is for loading yur LAMMPS data file, if you are in the folder where
that files is located
2nd convert the data to psf CHARMM
Also, you could try this. In this paper, they provide a tood to conver
CHARMM topologies to gromacs here. Thus, you convert to psf, then to gro top.
I am trying to read data from text file (which is output given by Tesseract OCR) and save the same in excel file. The problem i am facing here is the text files are in space separated format, and there are multiple files. Now i need to read all the files and save the same in excel sheet.
I am using MATLAB to import and export data. I even thought of using python to convert the files into CSV format so that i can easily import the same in MATLAB and simply excelwrite the same. But no good solution.
Any guidance would be of great help.
thank you
To read a text file in Matlab you can use fscanf or textscan then to export to excel you can use xlswrite that write directly to the excel file.
Currently I have a zipfile containing several thousand .xml files, extracted the folder is 1.5gb in size.
I have a function that matches data with specific files inside this zip file. I then want to read this specific file and extract additional data.
My question:
Is there any way to extract these specific files from the archive without unzipping the entire archive?
The built in unzip.m function can only be used to unzip the entire file so it won't work so I am thinking I have to use the COM interface or some other approach.
Matlab version: R2013a
While searching for solutions I found this:Read the data of CSV file inside Zip File without extracting the contents in Matlab
But I can't get the code in the answer to work for my situation
Edit:
Credit to Hoki and Intelk
zipFilename = 'HMDB.zip';
zipJavaFile = java.io.File(zipFilename);
zipFile=org.apache.tools.zip.ZipFile(zipJavaFile);
entries=zipFile.getEntries;
cnt=1;
while entries.hasMoreElements
tempObj=entries.nextElement;
file{cnt,1}=tempObj.getName.toCharArray';
cnt=cnt+1;
end
ind=regexp(file,'$*.xml$');
ind=find(~cellfun(#isempty,ind));
file=file(ind);
file = cellfun(#(x) fullfile('.',x),file,'UniformOutput',false);
And not forgetting the
zipFile.close