I want to iterate across the columns of dataframe in my Spark program and calculate min and max value.
I'm new to Spark and scala and not able to iterate over the columns once I fetch it in a dataframe.
I have tried running the below code but it needs column number to be passed to it, question is how do I fetch it from dataframe and pass it dynamically and store the result in a collection.
val parquetRDD = spark.read.parquet("filename.parquet")
parquetRDD.collect.foreach ({ i => parquetRDD_subset.agg(max(parquetRDD(parquetRDD.columns(2))), min(parquetRDD(parquetRDD.columns(2)))).show()})
Appreciate any help on this.
You should not be iterating on rows or records. You should be using aggregation function
import org.apache.spark.sql.functions._
val df = spark.read.parquet("filename.parquet")
val aggCol = col(df.columns(2))
df.agg(min(aggCol), max(aggCol)).show()
First when you do spark.read.parquet you are reading a dataframe.
Next we define the column we want to work on using the col function. The col function translate a column name to a column. You could instead use df("name") where name is the name of the column.
The agg function takes aggregation columns so min and max are aggregation functions which take a column and return a column with an aggregated value.
Update
According to the comments, the goal is to have min and max for all columns. You can therefore do this:
val minColumns = df.columns.map(name => min(col(name)))
val maxColumns = df.columns.map(name => max(col(name)))
val allMinMax = minColumns ++ maxColumns
df.agg(allMinMax.head, allMinMax.tail: _*).show()
You can also simply do:
df.describe().show()
which gives you statistics on all columns including min, max, avg, count and stddev
Related
In pyspark , i tried to do this
df = df.select(F.col("id"),
F.col("mp_code"),
F.col("mp_def"),
F.col("mp_desc"),
F.col("mp_code_desc"),
F.col("zdmtrt06_zstation").alias("station"),
F.to_timestamp(F.col("date_time"), "yyyyMMddHHmmss").alias("date_time_utc"))
df = df.groupBy("id", "mp_code", "mp_def", "mp_desc", "mp_code_desc", "station").min(F.col("date_time_utc"))
But, i have an issue
raise TypeError("Column is not iterable")
TypeError: Column is not iterable
Here is an extract of the pyspark documentation
GroupedData.min(*cols)[source]
Computes the min value for each numeric column for each group.
New in version 1.3.0.
Parameters: cols : str
In other words, the min function does not support column arguments. It only works with column names (strings) like this:
df.groupBy("x").min("date_time_utc")
# you can also specify several column names
df.groupBy("x").min("y", "z")
Note that if you want to use a column object, you have to use agg:
df.groupBy("x").agg(F.min(F.col("date_time_utc")))
Hello guys i have this function that gets the row Values from a DataFrame, converts them into a list and the makes a Dataframe from it.
//Gets the row content from the "content column"
val dfList = df.select("content").rdd.map(r => r(0).toString).collect.toList
val dataSet = sparkSession.createDataset(dfList)
//Makes a new DataFrame
sparkSession.read.json(dataSet)
What i need to do to make a list with other column values so i can have another DataFrame with the other columns values
val dfList = df.select("content","collection", "h").rdd.map(r => {
println("******ROW********")
println(r(0).toString)
println(r(1).toString)
println(r(2).toString) //These have the row values from the other
//columns in the select
}).collect.toList
thanks
Approach doesn't look right, you don't need to collect dataframe to just add new columns. Try adding columns to directly to dataframe using withColumn() withColumnRenamed() https://docs.azuredatabricks.net/spark/1.6/sparkr/functions/withColumn.html.
If you want to bring columns from another dataframe try joining. In any case it's not good idea to use collect as it will bring all your data to driver.
I am working with a spark dataframe where it contains the entire timestamp values from the Column 'IMG_CREATED_DT'.I have used collectAsList() and toString() method to get the values as List and converting in to String. But I am not getting how to fetch the max value out of it.Please guide me on this.
val query_new =s"""(select IMG_CREATED_DT from
${conf.get(UNCAppConstants.DB2_SCHEMA)}.$table)"""
println(query_new)
val db2_op=ConnectionUtilities_v.createDataFrame(src_props,srcConfig.url,query_new)
val t3 = db2_op.select("IMG_CREATED_DT").collectAsList().toString
How to get the max value out of t3.
You can calculate the max value form dataframe itself. Try the following sample.
val t3 = db2_op.agg(max("IMG_CREATED_DT").as("maxVal")).take(1)(0).get(0)
I'm filtering Integer columns from the input parquet file with below logic and been trying to modify this logic to add additional validation to see if any one of the input columns have count equals to the input parquet file rdd count. I would want to filter out such column.
Update
The number of columns and names in the input file will not be static, it will change every time we get the file.
The objective is to also filter out column for which the count is equal to the input file rdd count. Filtering integer columns is already achieved with below logic.
e.g input parquet file count = 100
count of values in column A in the input file = 100
Filter out any such column.
Current Logic
//Get array of structfields
val columns = df.schema.fields.filter(x =>
x.dataType.typeName.contains("integer"))
//Get the column names
val z = df.select(columns.map(x => col(x.name)): _*)
//Get array of string
val m = z.columns
New Logic be like
val cnt = spark.read.parquet("inputfile").count()
val d = z.column.where column count is not equals cnt
I do not want to pass the column name explicitly to the new condition, since the column having count equal to input file will change ( val d = .. above)
How do we write logic for this ?
According to my understanding of your question, your are trying filter in columns with integer as dataType and whose distinct count is not equal to the count of rows in another input parquet file. If my understanding is correct, you can add column count filter in your existing filter as
val cnt = spark.read.parquet("inputfile").count()
val columns = df.schema.fields.filter(x =>
x.dataType.typeName.contains("string") && df.select(x.name).distinct().count() != cnt)
Rest of the codes should follow as it is.
I hope the answer is helpful.
Jeanr and Ramesh suggested the right approach and here is what I did to get the desired output, it worked :)
cnt = (inputfiledf.count())
val r = df.select(df.col("*")).where(df.col("MY_COLUMN_NAME").<(cnt))
I have a spark dataframe containing 1 million rows and 560 columns. I need to find the count of unique items in each column of the dataframe.
I have written the following code to achieve this but it is getting stuck and taking too much time to execute:
count_unique_items=[]
for j in range(len(cat_col)):
var=cat_col[j]
count_unique_items.append(data.select(var).distinct().rdd.map(lambda r:r[0]).count())
cat_col contains the column names of all the categorical variables
Is there any way to optimize this?
Try using approxCountDistinct or countDistinct:
from pyspark.sql.functions import approxCountDistinct, countDistinct
counts = df.agg(approxCountDistinct("col1"), approxCountDistinct("col2")).first()
but counting distinct elements is expensive.
You can do something like this, but as stated above, distinct element counting is expensive. The single * passes in each value as an argument, so the return value will be 1 row X N columns. I frequently do a .toPandas() call to make it easier to manipulate later down the road.
from pyspark.sql.functions import col, approxCountDistinct
distvals = df.agg(*(approxCountDistinct(col(c), rsd = 0.01).alias(c) for c in
df.columns))
You can use get every different element of each column with
df.stats.freqItems([list with column names], [percentage of frequency (default = 1%)])
This returns you a dataframe with the different values, but if you want a dataframe with just the count distinct of each column, use this:
from pyspark.sql.functions import countDistinct
df.select( [ countDistinct(cn).alias("c_{0}".format(cn)) for cn in df.columns ] ).show()
The part of the count, taken from here: check number of unique values in each column of a matrix in spark