Histogram fit and kernal Density plot in MATLAB - matlab

I want to plot histogram fit and kernel Density curve in one plot means in I figure ks density curve and histfit in one frame .
Can someone help me how to do that.
I am just presenting an example code what I want to do.
Thanks a lot .
x = rand([1 50])
figure(1)
histfit(x)
hold on
[f,xi] = ksdensity(x);
hold off
figure
plot(xi,f);

The function calls for plotting are incorrect. Essentially, hold on asks MATLAB to plot everything thereafter, overlapping the previous figure. hold off disables this and overwrites the previous figure. Hence, run the code like this:
x = rand([1 50])
figure(1)
histfit(x)
hold on
[f,xi] = ksdensity(x);
plot(xi,f);
hold off

Related

How to update a plot with two subplot in MATLAB?

I have a function in MATLAB and it plots two curves and I run it two times.
On the first time plot main curve as you can see in the red color (first plot) and after that turn the "hold on" and execute my function again with the green color (second shape).
The problem is that the left subplot does not work and delete the first curve (red curve) but the second one works fine (last plot).
My main script is:
% some code to processing
...
roc('r.-',data); %this function plots my curves
and on the second run
% some code to processing
...
plot on
roc('g.-',data);
and my roc function contains:
%some code
...
subplot(1,2,1)
hold on
HCO1=plot(xroc(J),yroc(J),'bo');
hold off
legend([HR1,HRC1,HCO1],'ROC curve','Random classifier','Cut-off
point','Location','NorthOutside')
subplot(1,2,2)
hold on
HCO2=plot(1-xroc(J),yroc(J),'bo');
hold off
legend([HR2,HRC2,HCO2],'ROC curve','Random classifier','Cut-off
point','Location','NorthOutside')
disp(' ')
%....
Assuming your roc function calculates xroc and yroc I suggest you rewrite your code to modularize it
function [xroc,yroc] = roc(data)
%your algorithm or training code
%xroc=...
%yroc=...
end
this way your main script could be edited to something like this
%first run
[xroc1,yroc1] = roc(data);
%...some further processing with data variable
[xroc2,yroc2] = roc(data);
%plots
ax1 = subplot(1,2,1,'nextplot','add'); %create left axes
ax2 = subplot(1,2,2,'nextplot','add'); %create right axes (mirrored roc)
%now you can go ahead and make your plots
%first the not mirrored plots
plot(xroc1,yroc1,'r','parent',ax1);
plot(xroc2,yroc2,'g','parent',ax1);
%and then the mirrored plots
plot(1-xroc1,yroc1,'r','parent',ax2);
plot(1-xroc2,yroc2,'g','parent',ax2);
it is a little effort to rewrite but it surely will help to make your code scaleable to if you want to add more than just two curves in future.

Create 2D Spectrogram in Matlab

I am in need of plotting a 2D spectrogram of a signal in Matlab. I need it for a printed assignment, hence the 3D image makes no sense. However, when the signal is plotted using Spectrogram it automatically produces a 3D plot of the signal.
My Code:
Dataset = 1; % Dataset to be analysed
N = 1024; % Window size
Beta = 12; % Kaiser window beta value (small = narrow main lope)
Overlap = 800; % Window overlap
Threshold = -150; % Minimum magnitude before threshold
spectrogram(Enclosure{Dataset}(1:end),kaiser(N,Beta),Overlap,2048,fs,'MinThreshold',Threshold,'yaxis');
which produces a graph that looks like this:
But it is seen from the top, and the graph is really showing this:
The reason why i need it to specifically be 2D (and why i don't settle with a screenshot) is because i am using Matlab2tikz to convert Matlab figures into Tikz figures in LaTex. with the 3D images i get figures of +100 Mb and 2D will reduce the size to <1Mb.
I don't know what version of Matlab you are using but in 2015a you should be able to get a handle to the figure with the 3D plot and change the view angle to 2D:
view(0,90);
I've also got an example of how you can make your own 2D plot from the outputs of spectrogram() using a similar method:
x = [0:0.01:100];
y = sin(5*x);
y = awgn(y,0.1);
[S,F,T,P] = spectrogram(y,200,0,length(y)*5,100);
[m,n] = size(P);
figure(2)
surf(F,T,zeros(n,m),P','EdgeColor','none')
view(0,90)
xlabel('Frequency')
ylabel('Time (s)')
The output looks like this:
Hopefully since there is no altitude information, the figure size might be smaller but I can't test that since I don't have Matlab2tikz.
One option is to capture whatever its plotted and then plot it as an image. You can do this using getframe
if you do
F=getframe(gca);
cla;
imshow(F.cdata);
You'll get exactly what you will be seeing before, but as an image.
However I think it defeats a bit the purpose of Matlab2Tikz, as the idea os that you have Tikz code describing your data...
You can try the following:
[~,F,T,ps]=spectrogram(Enclosure{Dataset}(1:end),kaiser(N,Beta),Overlap,2048,fs,'MinThreshold',Threshold,'yaxis').
% Output the spectrum in ps
imagesc(T,F,10*log10(ps))
% Generate a 2d image
view(270,90)
xlabel('Time [s]')
ylabel('Frequency [Hz]')
c=colorbar;
c.Label.String='Power [dB]';
% Extra setting to make the plot look like the spectrogram
Good luck

Matlab: replace one plot maintaining others

I have a figure in which I plot some disperse points and then a trajectory. I want to switch between different trajectories by plotting them in the same figure as the points, but without creating new figures, i.e., "erasing" the first trajectory and then plotting the new one.
Is there a way of doing this?
Perhaps this little demo will be helpful:
xy = rand(20,2);
figure
% Plot first iteration and output handles to each
h = plot(xy(:,1),xy(:,2),'b.',xy(1:2,1),xy(1:2,2),'r-');
axis([0 1 0 1])
% Update second plot by setting the XData and YData properties of the handle
for i = 2:size(xy,1)-1
set(h(2),{'XData','YData'},{xy(i:i+1,1),xy(i:i+1,2)})
drawnow
pause(0.1);
end
You should read up on handle graphics in Matlab and the get and set functions.

Plotting points while plotting vectors : Matlab

I need to make a plot with only points and tried something like
plot(x,y)
where x and y are vectors: collection of points.
I do not want matlab to connect these points itself. I want to plot as if plotted with
for loop
plot;hold on;
end
I tried
plot(x,y,'.');
But this gave me too thick points.
I do not want to use forloop because it is time expensive. It takes a lot of time.
You're almost there, just change the MarkerSize property:
plot(x,y,'.','MarkerSize',1)
Try:
plot(x,y,'*');
or
plot(x,y,'+');
You can take a look to the documentation: http://www.mathworks.nl/help/matlab/creating_plots/using-high-level-plotting-functions.html
help scatter
IIRC: where S is the size of the scatter points:
scatter(x,y,S)
You may try this piece of code that avoid using loops. The plot created does not have lines but markers of different colors corresponding to each column of matrices x and y.
%some data (matrix)
x = repmat((2:10)',1,6);
y = bsxfun(#times, x, 1:6);
set(0,'DefaultAxesColorOrder', jet(6)); %set the default matlab color
figure('Color','w');
plot(x,y,'p'); %single call to plot
axis([1 11 0 70]);
box off;
legend(('a':'f')');
This gives

Matlab: Plot3 not showing the 3rd axis

All the three variables I am using to plot are matrix of size 1x1x100. I am using this code line to plot:
hold on;
for i=1:100
plot3(R_L(:,:,i),N_Pc(:,:,i),CO2_molefraction_top_of_window(:,:,i),'o');
xlabel('R_L');
ylabel('N_P_c');
zlabel('CO_2')
end
However, I am not getting the third axis, and hence the third variable CO2_molefraction_top_of_window on the plot. May I know where am I wrong?
Besides the above question, but on the same subject, I want to know if there is any option where I can plot 4 dimensional plot just like the 3 dimensional plot which can be drawn using plot3?
So I had the same problem when using plot3. For some reason, using the hold on command "flattens" the plot. I'm not sure why, but I suspect it has something to do with the operation hold on performs on the plot.
Edit: To clarify, the 3d plot is still there, but the perspective has been forced to change. If you use the "rotate 3D" tool (the one with an arrow around a cube), you can see the graph is 3d, the default perspective is just straight on so only two axes are visible and it appears flat.
Just a note --- you only need to do the xlabel ylabel zlabel commands once (outside the loop).
Also:
is there any reason your matrices are 1x1x100 instead of just 100x1 or 1x100?
Because if you reshape them to 2D you can just do the plotting in one hit.
What do you mean by "missing third axis"? When I run your code (or as close as I can get, since you didn't provide a reproducible example), I do get a 3rd axis:
.
X = rand(1,1,100); % 1x1x100 X matrix
Y = rand(1,1,100); % 1x1x100 Y matrix
Z = rand(1,1,100); % 1x1x100 Z matrix
% Now, we could do a for loop and plot X(:,:,i), Y(:,:,i), Z(:,:,i),
% OR we can just convert the matrix to a vector (since it's 1x1x100 anyway)
% and do the plotting in one go using 'squeeze' (see 'help squeeze').
% squeeze(X) converts it from 1x1x100 (3D matrix) to 100x1 (vector):
plot3(squeeze(X),squeeze(Y),squeeze(Z),'o')
xlabel('x')
ylabel('y')
zlabel('z')
This gives the following, in which you can clearly see three axes:
If it's the gridlines that you want to make the graph look "more 3D", then try grid on (which is in the examples in the Matlab help file for plot3, try help plot3 from the Matlab prompt):
grid on
You will have to clarify "missing third axis" a bit more.
I came across a similar problem and as #Drofdarb's the hold on seems to flatten out one axis. Here is a snippet of my code, hope this helps.
for iter = 1:num_iters:
% hold on;
grid on;
plot3(tita0,tita1, num_iters,'o')
title('Tita0, Tita1')
xlabel('Tita0')
ylabel('Tita1')
zlabel('Iterations')
hold on; % <---- Place here
drawnow
end
As opposed to:
for iter = 1:num_iters:
grid on;
hold on; % <---- Not here
plot3(tita0,tita1, num_iters,'o')
title('Tita0, Tita1')
xlabel('Tita0')
ylabel('Tita1')
zlabel('Iterations')
% hold on;
drawnow
end