I a file containing the genome ids following NZ_FLAT01000030.1_173 I need to manipulate those ids like this one: NZ_FLAT01000030.1
I tried some but didn't give me the exact thing.
sed 's/_/\t/' output : NZ FLAT01000030.1_173
sed -r 's/_//' output: NZFLAT01000030.1_173
sed -r 's/_//g' output: NZFLAT01000030.1173
How can I do that by using sed command?
Are you trying to remove the undesrscore and the digits following it?
echo 'NZ_FLAT01000030.1_173' | sed -E 's/_[0-9]+//g'
NZ_FLAT01000030.1
$ echo 'NZ_FLAT01000030.1_173' | sed 's/_[^_]*$//'
NZ_FLAT01000030.1
Due to the know prob of mocha-lcov-mocha breaking file paths, I need to fix the current output paths that looks like this:
SF:Vis/test-Guid.coffee
SF:Vis/Guid.coffee
SF:Vis/test-Vis-Edge.coffee
SF:Vis/Vis-Edge.coffee
into
SF:test/Vis/test-Guid.coffee
SF:src/Vis/Guid.coffee
SF:test/Vis/test-Vis-Edge.coffee
SF:src/Vis/Vis-Edge.coffee
I'm not very good with sed, but I got it to work using:
mocha -R mocha-lcov-reporter _coverage/test --recursive | sed 's,SF:,SF:src/,' | sed s',SF.*test.*,SF:test//&,' | sed s',/SF:,,' | sed s',test/src,test,' | ./node_modules/coveralls/bin/coveralls.js
which is basically doing 4 sed commands in sequence
sed 's,SF:,SF:src/,'
sed s',SF.*test.*,SF:test//&,'
sed s',/SF:,,'
sed s',test/src,test,'
my question is if there is a way to do with this one sed command, or use another osx/linux command line tool
Initially put "src/" after every ":" and then if "test" is found on the line replace "src" with "test":
$ sed 's,:,:src/,;/test/s,src,test,' file
SF:test/Vis/test-Guid.coffee
SF:src/Vis/Guid.coffee
SF:test/Vis/test-Vis-Edge.coffee
SF:src/Vis/Vis-Edge.coffee
You could put all the sed commands in a file, one line per command, and just use "sed -e script". But if you just want it on a single command-line, separate with semicolons. This works for me:
sed 's,SF:,SF:src/,;s,SF.*test.*,SF:test//&,;s,SF:,,;s,test/src/,test,'
sed command
sed '\#test#!{s#SF:Vis/#SF:src/Vis/#g};\#SF:Vis/test#{s#SF:Vis/test#SF:test/Vis/test#g};' my_file
Here is an awk version:
awk -F: '/SF/ {$0=$1FS (/test/?"test/":"src/")$2}1' file
SF:test/Vis/test-Guid.coffee
SF:src/Vis/Guid.coffee
SF:test/Vis/test-Vis-Edge.coffee
SF:src/Vis/Vis-Edge.coffee
How it works:
awk -F: ' # Set field separator to ":"
/SF/{ # Does line start with "SF"?
$0=$1FS (/test/?"test/":"src/")$2 # Recreat String by adding "test" if line contains "test", else "src"
}
1 # Print all lines
' file # read the file
I am trying to replace softtabs with hardtabs in sed. I have tried the following but to no avail:
sed -i 's/ /\t/g' path/to/file
What am I doing wrong?
It appears what I was looking for was the unexpand command.
unexpand -a -t4 file > newfile
If you have a file like this where all space is spaces and not tabs:
cat file
test more data
here are more
You can use
sed 's/ */\t/g'
or
sed -r 's/ +/\t/g'
and get
test more data
here are more
Where it now have changed multiple spaces to tab
Hi I use the following code to remove the trailing lines from a file. But is there anyway I can run this on 2000 files inside a folder with out renaming them ? thanx in advance
sed -e :a -e '/^\n*$/{$d;N;};/\n$/ba'
sed -i "" -e :a -e '/^\n*$/{$d;N;};/\n$/ba' YourFile
if it is in same folder with a pattern to select id like *.txt, replace YourFile by the shell pattern, if other selection pass each file name via a pre selection like find or a while read from a stream/file input
You can use find to list the files that you need, and then run sed on each on them. This version uses the -i option to modify the files in place:
find . -name "*.txt" | xargs -I % sed -i -e :a -e '/^\n*$/{$d;N;};/\n$/ba' %
I have a variables that needs to be modified so that minutes %M is added. I know the sed command and it is working as expected.
# cat mysed.txt
myfirstfile="comany$mydb`date +'%d-%b-%Y-%H'`.sql"
# sed -i 's/\%H/\%H-\%M/' mysed.txt
# cat mysed.txt
myfirstfile="company$mydb`date +'%d-%b-%Y-%H-%M'`.sql"
But if I run the same sed command again, it will add %M again as follows.
# sed -i 's/\%H/\%H-\%M/' mysed.txt
# cat mysed.txt
myfirstfile="company$mydb`date +'%d-%b-%Y-%H-%M-%M'`.sql"
I need a sed command that should add the minutes %M only once even if sed command is executed twice (by mistake)
# sed -i "s/%H'/%H-%M'/" mysed.txt
This should work. This way it will only do the replacement if there is a quote mark next to the %H.
Test if it is present before substituting:
sed '/%H-%M/! s/%H/%H-%M/' mysed.txt
Btw. % does not need to be escaped.
I believe below command will work fine.Please replace test.dat file with your file name.
cat test.dat|sed "s/\%H\'/\%H\-\%M\'/" > test.dat
Without cat command
sed -i "s/\%H\'/\%H\-\%M\'/" test.dat > test.dat
Cheers!