Postgres:10 in docker swarm cluster. Database system is shut down - postgresql

I use postgres:10 (https://hub.docker.com/_/postgres/) image for DB.
It is deployed in docker swarm cluster.
After running DB replica I got database system is shut down in DB's log.
2018-05-11 10:26:53.073 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432,
2018-05-11 10:26:53.073 UTC [1] LOG: listening on IPv6 address "::", port 5432,
2018-05-11 10:26:53.077 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432",
2018-05-11 10:26:53.092 UTC [20] LOG: database system was shut down at 2018-05-11 10:26:20 UTC,
2018-05-11 10:26:53.100 UTC [1] LOG: database system is ready to accept connections,
The files belonging to this database system will be owned by user "postgres".,
This user must also own the server process.,
,
The database cluster will be initialized with locale "en_US.utf8".,
The default database encoding has accordingly been set to "UTF8".,
The default text search configuration will be set to "english".,
,
Data page checksums are disabled.,
,
fixing permissions on existing directory /var/lib/postgresql/data ... ok,
creating subdirectories ... ok,
selecting default max_connections ... 100,
selecting default shared_buffers ... 128MB,
selecting dynamic shared memory implementation ... posix,
creating configuration files ... ok,
running bootstrap script ... ok,
performing post-bootstrap initialization ... ok,
,
WARNING: enabling "trust" authentication for local connections,
You can change this by editing pg_hba.conf or using the option -A, or,
--auth-local and --auth-host, the next time you run initdb.,
syncing data to disk ... ok,
,
Success. You can now start the database server using:,
,
pg_ctl -D /var/lib/postgresql/data -l logfile start,
,
waiting for server to start....2018-05-11 09:39:21.129 UTC [37] LOG: listening on IPv4 address "127.0.0.1", port 5432,
2018-05-11 09:39:21.130 UTC [37] LOG: could not bind IPv6 address "::1": Cannot assign requested address,
2018-05-11 09:39:21.130 UTC [37] HINT: Is another postmaster already running on port 5432? If not, wait a few seconds and retry.,
2018-05-11 09:39:21.133 UTC [37] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432",
2018-05-11 09:39:21.147 UTC [38] LOG: database system was shut down at 2018-05-11 09:39:20 UTC,
2018-05-11 09:39:21.152 UTC [37] LOG: database system is ready to accept connections,
done,
server started,
CREATE DATABASE,
,
CREATE ROLE,
,
,
/usr/local/bin/docker-entrypoint.sh: ignoring /docker-entrypoint-initdb.d/*,
,
2018-05-11 09:39:21.595 UTC [37] LOG: received fast shutdown request,
waiting for server to shut down....2018-05-11 09:39:21.596 UTC [37] LOG: aborting any active transactions,
2018-05-11 09:39:21.598 UTC [37] LOG: worker process: logical replication launcher (PID 44) exited with exit code 1,
2018-05-11 09:39:21.599 UTC [39] LOG: shutting down,
2018-05-11 09:39:21.613 UTC [37] LOG: database system is shut down,
done,
server stopped,
,
PostgreSQL init process complete; ready for start up.,
,
2018-05-11 09:39:21.706 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432,
2018-05-11 09:39:21.706 UTC [1] LOG: listening on IPv6 address "::", port 5432,
2018-05-11 09:39:21.709 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432",
2018-05-11 09:39:21.724 UTC [64] LOG: database system was shut down at 2018-05-11 09:39:21 UTC,
2018-05-11 09:39:21.729 UTC [1] LOG: database system is ready to accept connections,
2018-05-11 10:26:20.444 UTC [1] LOG: received smart shutdown request,
2018-05-11 10:26:20.449 UTC [1] LOG: worker process: logical replication launcher (PID 70) exited with exit code 1,
2018-05-11 10:26:20.449 UTC [65] LOG: shutting down,
2018-05-11 10:26:20.460 UTC [1] LOG: database system is shut down,
Image :
FROM postgres:10
COPY healthcheck /usr/local/bin/
RUN chmod +x /usr/local/bin/healthcheck
HEALTHCHECK --interval=30s --timeout=30s --retries=3 \
CMD healthcheck
Snippet from docker-compose :
db_jackrabbit:
build: ./images/pgsql_jackrabbit
container_name: db_jackrabbit
environment:
- POSTGRES_DB=${JACK_POSTGRES_DB}
- POSTGRES_USER=${JACK_POSTGRES_USER}
- POSTGRES_PASSWORD=${JACK_POSTGRES_PASSWORD}
volumes:
- pgsql_jackrabbit_local:/var/lib/postgresql/data
ports:
- ${PORT_DB_JACKRABBIT}:5432
healthcheck:
#!/bin/bash
set -eo pipefail
host="$(hostname -i || echo '127.0.0.1')"
user="${POSTGRES_USER:-postgres}"
db="${POSTGRES_DB:-$POSTGRES_USER}"
export PGPASSWORD="${POSTGRES_PASSWORD:-}"
args=(
# force postgres to not use the local unix socket (test "external" connectibility)
--host "$host"
--username "$user"
--dbname "$db"
--quiet --no-align --tuples-only
)
if select="$(echo 'SELECT 1' | psql "${args[#]}")" && [ "$select" = '1' ]; then
exit 0
fi
exit 1
But DB still alive. It is shutdown periodically and accept connections again (
What it the problem?
Thanks in advance!

Ok, so I solved my issue. This issue helped me.
It seems like Postgres initialization process does stop the initialization process once done, and it is another process which follows up and accepts connexion.
Hence I had:
postgres:
deploy:
restart_policy:
condition: on-failure
window: 15m
and apparently docker received a end-of-process status code, so it stopped without going to the next process so never accepting connexions.
My interpretation may be incorrect, but at least if you face the issue, try removing restart_policy key to see if it fixes it.
I haven't tried to restore healthcheck yet, as it may also have undesired side effects.

Related

Unable to connect to docker container which includes a postgres instance

I have a docker instance and I have changed the file =:
"/var/lib/postgreqsql/data/pg_hba.conf"
And it now has errors.
It appears that this is preventing me actually connecting to the docker instance.
docker logs --tail 20 postgres
2022-08-04 00:30:26.392 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432
2022-08-04 00:30:26.392 UTC [1] LOG: listening on IPv6 address "::", port 5432
2022-08-04 00:30:26.417 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2022-08-04 00:30:26.451 UTC [1] LOG: end-of-line before authentication method
2022-08-04 00:30:26.451 UTC [1] CONTEXT: line 87 of configuration file "/var/lib/postgreqsql/data/pg_hba.conf"
2022-08-04 00:30:26.451 UTC [1] FATAL: could not load pg_hba.conf
2022-08-04 00:30:26.453 UTC [1] LOG: database system is shut down
When I try and connect I get a consistent message as follows:
root#VM01:~/vm01-docker# docker exec -u root -it postgres bash
Error response from daemon: Container 4545dcba980215c is restarting, wait until the container is running
root#VM01:~/vm01-docker#
Stopping and starting as follows:
docker-compose stop postgres
docker-compose start postgres
Has no impact the issue remains.
What I need to do is be able to connect again to the instance and edit the file pg_hba.conf again to correct the fault but I am not sure how I can. (I am a docker newb.)

invalid length of startup packet docker postgressql

PostgreSQL init process complete; ready for start up.
2022-05-16 19:28:51.674 UTC [1] LOG: starting PostgreSQL 14.2 on x86_64-pc-linux-musl, compiled by gcc (Alpine 10.3.1_git20211027) 10.3.1 20211027, 64-bit
2022-05-16 19:28:51.674 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432
2022-05-16 19:28:51.674 UTC [1] LOG: listening on IPv6 address "::", port 5432
2022-05-16 19:28:51.677 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2022-05-16 19:28:51.681 UTC [51] LOG: database system was shut down at 2022-05-16 19:28:51 UTC
2022-05-16 19:28:51.684 UTC [1] LOG: database system is ready to accept connections
2022-05-16 19:29:07.610 UTC [59] LOG: invalid length of startup packet
2022-05-16 19:29:07.611 UTC [58] LOG: invalid length of startup packet
2022-05-16 19:29:07.612 UTC [60] LOG: invalid length of startup packet
2022-05-16 19:29:08.647 UTC [62] LOG: invalid length of startup packet
2022-05-16 19:29:08.650 UTC [61] LOG: invalid length of startup packet
2022-05-16 19:29:08.652 UTC [63] LOG: invalid length of startup packet
Any help would be appreciated I couldn't figure out
Docker composer file
version: '3.9'
services:
postgres:
image: postgres:14-alpine
ports:
- 5432:5432
volumes:
- ~/apps/postgres:/var/lib/postgresql/data
environment:
- POSTGRES_PASSWORD=S3cret
- POSTGRES_USER=citizix_user
- POSTGRES_DB=citizix_db
Using ubuntu 20.4
Something, probably a monitoring system, is establishing TCP connections to the database server, then closing them without sending a correct PostgreSQL connection packet.
You can include %h in your log_line_prefix to see the client address of these connections, which may help identify the culprit.
The solution is to get the monitoring system to establish a database connection rather than only a TCP connection. Not only will that get rid of the message, but it will make the test much more useful.

Could not bind wireguard address when starting postgresql

I'm running wg-quick.service on system startup to establish a VPN tunnel:
root#db ~ # cat /usr/lib/systemd/system/wg-quick#.service
[Unit]
Description=WireGuard via wg-quick(8) for %I
After=network-online.target nss-lookup.target
Wants=network-online.target nss-lookup.target
PartOf=wg-quick.target
Documentation=man:wg-quick(8)
Documentation=man:wg(8)
Documentation=https://www.wireguard.com/
Documentation=https://www.wireguard.com/quickstart/
Documentation=https://git.zx2c4.com/wireguard-tools/about/src/man/wg-quick.8
Documentation=https://git.zx2c4.com/wireguard-tools/about/src/man/wg.8
[Service]
Type=oneshot
RemainAfterExit=yes
ExecStart=/usr/bin/wg-quick up %i
ExecStop=/usr/bin/wg-quick down %i
Environment=WG_ENDPOINT_RESOLUTION_RETRIES=infinity
[Install]
WantedBy=multi-user.target
I want postgresql to listen on the wireguard address - 10.100.0.107:
root#db ~ # cat /etc/postgresql/13/main/conf.d/db1.conf | grep listen
listen_addresses = '127.0.0.1,10.100.0.107' # what IP address(es) to listen on;
After reboot I got following errors in my postgresql log:
2021-06-23 19:44:26.389 UTC [831] LOG: starting PostgreSQL 13.3 (Ubuntu 13.3-1.pgdg20.04+1) on x86_64-pc-linux-gnu, compiled by gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0, 64-bit
2021-06-23 19:44:26.389 UTC [831] LOG: listening on IPv4 address "127.0.0.1", port 5432
2021-06-23 19:44:26.395 UTC [831] LOG: could not bind IPv4 address "10.100.0.107": Cannot assign requested address
2021-06-23 19:44:26.395 UTC [831] HINT: Is another postmaster already running on port 5432? If not, wait a few seconds and retry.
2021-06-23 19:44:26.395 UTC [831] WARNING: could not create listen socket for "10.100.0.107"
2021-06-23 19:44:26.395 UTC [831] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2021-06-23 19:44:26.411 UTC [880] LOG: database system was shut down at 2021-06-23 19:43:14 UTC
2021-06-23 19:44:26.422 UTC [831] LOG: database system is ready to accept connections
Sadly, postgresql does not accept connections at 10.100.0.107.
Restart of postgresql after server reboot helps.
Also set listen_addresses='*' helps too.
But I would like to accept connections to only the specified addresses: 127.0.0.1, 10.100.0.107. How can I start a postgresql service after successfully initializing the wg-quick service?
Thanks!

postgresql running in docker compose doesn't create role

I am trying to run postgreSQL via docker-compose and I am getting the issue that user/password is not created when I started the service.
version: "3"
services:
db:
image: postgres:latest
container_name: postgres
#volumes:
#- postgres-data:/var/lib/postgresql/data
ports:
- 5432:5432
environment:
- POSTGRES_PASSWORD=postgrespassword
- POSTGRES_USER=postgres
- POSTGRES_DB=random_db_name
restart: always
I have this block of code in my docker-compose.yml and I run the following command:
docker-compose up -d (this allow me to start the service in background)
and when I check the logs I got:
docker logs -f 0e1731f95396
The files belonging to this database system will be owned by user "postgres".
This user must also own the server process.
The database cluster will be initialized with locale "en_US.utf8".
The default database encoding has accordingly been set to "UTF8".
The default text search configuration will be set to "english".
Data page checksums are disabled.
fixing permissions on existing directory /var/lib/postgresql/data ... ok
creating subdirectories ... ok
selecting dynamic shared memory implementation ... posix
selecting default max_connections ... 100
selecting default shared_buffers ... 128MB
selecting default time zone ... Etc/UTC
creating configuration files ... ok
running bootstrap script ... ok
performing post-bootstrap initialization ... ok
syncing data to disk ... ok
Success. You can now start the database server using:
initdb: warning: enabling "trust" authentication for local connections
You can change this by editing pg_hba.conf or using the option -A, or
--auth-local and --auth-host, the next time you run initdb.
pg_ctl -D /var/lib/postgresql/data -l logfile start
waiting for server to start....2021-04-27 16:20:44.592 UTC [49] LOG: starting PostgreSQL 13.2 (Debian 13.2-1.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit
2021-04-27 16:20:44.594 UTC [49] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2021-04-27 16:20:44.603 UTC [50] LOG: database system was shut down at 2021-04-27 16:20:44 UTC
2021-04-27 16:20:44.609 UTC [49] LOG: database system is ready to accept connections
done
server started
CREATE DATABASE
/usr/local/bin/docker-entrypoint.sh: ignoring /docker-entrypoint-initdb.d/*
waiting for server to shut down...2021-04-27 16:20:44.889 UTC [49] LOG: received fast shutdown request
.2021-04-27 16:20:44.891 UTC [49] LOG: aborting any active transactions
2021-04-27 16:20:44.892 UTC [49] LOG: background worker "logical replication launcher" (PID 56) exited with exit code 1
2021-04-27 16:20:44.892 UTC [51] LOG: shutting down
2021-04-27 16:20:44.907 UTC [49] LOG: database system is shut down
done
server stopped
PostgreSQL init process complete; ready for start up.
2021-04-27 16:20:45.018 UTC [1] LOG: starting PostgreSQL 13.2 (Debian 13.2-1.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit
2021-04-27 16:20:45.019 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432
2021-04-27 16:20:45.019 UTC [1] LOG: listening on IPv6 address "::", port 5432
2021-04-27 16:20:45.023 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2021-04-27 16:20:45.029 UTC [77] LOG: database system was shut down at 2021-04-27 16:20:44 UTC
2021-04-27 16:20:45.034 UTC [1] LOG: database system is ready to accept connections
But when I try to connect to this database locally I get the message: "FATAL: role "postgres" does not exist"
Do you have any input about how to solve this problem?
I already made a few attempts after reading a few comments from different places but I got always the same problem.
I was expecting to run locally postgreSQL and setup already a user/password and a Database with that name in the docker-compose

Slow postgresql startup in docker container

We built a debian docker image with postgresql to run one of our service. The database is for internal container use and does not need port mapping. I believe it is installed via apt-get in the Dockerbuild file.
We stop and start this service often, and it is a performance issue that the database is slow to startup. Although empty, takes sightly over 20s to accept connection on the first time we start the docker image. The log is as follow :
2019-04-05 13:05:30.924 UTC [19] LOG: could not bind IPv6 socket: Cannot assign requested address
2019-04-05 13:05:30.924 UTC [19] HINT: Is another postmaster already running on port 5432? If not, wait a few seconds and retry.
2019-04-05 13:05:30.982 UTC [20] LOG: database system was shut down at 2019-04-05 12:57:16 UTC
2019-04-05 13:05:30.992 UTC [20] LOG: MultiXact member wraparound protections are now enabled
2019-04-05 13:05:30.998 UTC [19] LOG: database system is ready to accept connections
2019-04-05 13:05:30.998 UTC [24] LOG: autovacuum launcher started
2019-04-05 13:05:31.394 UTC [26] [unknown]#[unknown] LOG: incomplete startup packet
2019-04-19 13:21:58.974 UTC [37] LOG: could not bind IPv6 socket: Cannot assign requested address
2019-04-19 13:21:58.974 UTC [37] HINT: Is another postmaster already running on port 5432? If not, wait a few seconds and retry.
2019-04-19 13:21:59.025 UTC [38] LOG: database system was interrupted; last known up at 2019-04-05 13:05:34 UTC
2019-04-19 13:21:59.455 UTC [39] [unknown]#[unknown] LOG: incomplete startup packet
2019-04-19 13:21:59.971 UTC [42] postgres#postgres FATAL: the database system is starting up
[...]
2019-04-19 13:22:15.221 UTC [85] root#postgres FATAL: the database system is starting up
2019-04-19 13:22:15.629 UTC [38] LOG: database system was not properly shut down; automatic recovery in progress
2019-04-19 13:22:15.642 UTC [38] LOG: redo starts at 0/14EEBA8
2019-04-19 13:22:15.822 UTC [38] LOG: invalid record length at 0/24462D0: wanted 24, got 0
2019-04-19 13:22:15.822 UTC [38] LOG: redo done at 0/24462A8
2019-04-19 13:22:15.822 UTC [38] LOG: last completed transaction was at log time 2019-04-05 13:05:36.602318+00
2019-04-19 13:22:16.084 UTC [38] LOG: MultiXact member wraparound protections are now enabled
2019-04-19 13:22:16.094 UTC [37] LOG: database system is ready to accept connections
2019-04-19 13:22:16.094 UTC [89] LOG: autovacuum launcher started
2019-04-19 13:22:21.528 UTC [92] root#test LOG: could not receive data from client: Connection reset by peer
2019-04-19 13:22:21.528 UTC [92] root#test LOG: unexpected EOF on client connection with an open transaction
Any suggetion in fixing this startup issue ?
EDIT : Some requested the dockerfile, here is relevant lines
RUN apt-get update \
&& apt-get install -y --force-yes \
postgresql-9.6-pgrouting \
postgresql-9.6-postgis-2.3 \
postgresql-9.6-postgis-2.3-scripts \
[...]
# Download, compile and install GRASS 7.2
[...]
USER postgres
# Create a database 'grass_backend' owned by the "root" role.
RUN /etc/init.d/postgresql start \
&& psql --command "CREATE USER root WITH SUPERUSER [...];" \
&& psql --command "CREATE EXTENSION postgis; CREATE EXTENSION plpython3u;" --dbname [dbname] \
&& psql --command "CREATE EXTENSION postgis_sfcgal;" --dbname [dbname] \
&& psql --command "CREATE EXTENSION postgis; CREATE EXTENSION plpython3u;" --dbname grass_backend
WORKDIR [...]
End of file after workdir, meaning I guess the database isn't properly shut down
Answer I stopped properly postgresql inside the docker install. It now starts 15s faster. Thanks for replying
Considering the line database system was not properly shut down; automatic recovery in progress that would definitely explain slow startup, please don't kill the service, send the stop command and wait for it to close properly.
Please note that the system might kill the process if it takes to long to stop, this will happen in the case of postgresql if there are connections still held to it (probably from your application). If you disconnect all the connections and than stop, postgresql should be able to stop relatively quickly.
Also make sure you stop the postgresql service inside the container before turning it off.
TCP will linger connections for a while, if you are starting and stopping in quick succession without properly stopping the service inside that would explain your error of why the port is unavailable, normally the service can start/stop in very quick succession on my machine if nothing is connected to it.
3 start-stop cycles of postgresql on my machine (I have 2 decently sized databases)
$ time bash -c 'for i in 1 2 3; do /etc/init.d/postgresql-11 restart; done'
* Stopping PostgreSQL 11 (this can take up to 92 seconds) ... [ ok ]
* /run/postgresql: correcting mode
* Starting PostgreSQL 11 ... [ ok ]
* Stopping PostgreSQL 11 (this can take up to 92 seconds) ... [ ok ]
* /run/postgresql: correcting mode
* Starting PostgreSQL 11 ... [ ok ]
* Stopping PostgreSQL 11 (this can take up to 92 seconds) ... [ ok ]
* /run/postgresql: correcting mode
* Starting PostgreSQL 11 ... [ ok ]
real 0m1.188s
user 0m0.260s
sys 0m0.080s