When i try to import "sklearn" and use it, i am getting "Attribute Error",
## Modeling
# Multiple Linear REgression (Least Square fitting)
from sklearn.model_selection import cross_val_score
from sklearn.linear_model import LinearRegression
The error from Jupyter notebook is as below,
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-33-9fc361c79a41> in <module>()
2 # Multiple Linear REgression (Least Square fitting)
3
----> 4 from sklearn.model_selection import cross_val_score
5 from sklearn.linear_model import LinearRegression
6 #from sklearn.model_selection.train_test_split import train_test_split
D:\Anaconda_details\lib\site-packages\sklearn\model_selection\__init__.py in <module>()
17 from ._split import check_cv
18
---> 19 from ._validation import cross_val_score
20 from ._validation import cross_val_predict
21 from ._validation import cross_validate
D:\Anaconda_details\lib\site-packages\sklearn\model_selection\_validation.py in <module>()
29 from ..utils._joblib import logger
30 from ..externals.six.moves import zip
---> 31 from ..metrics.scorer import check_scoring, _check_multimetric_scoring
32 from ..exceptions import FitFailedWarning
33 from ._split import check_cv
D:\Anaconda_details\lib\site-packages\sklearn\metrics\__init__.py in <module>()
5
6
----> 7 from .ranking import auc
8 from .ranking import average_precision_score
9 from .ranking import coverage_error
D:\Anaconda_details\lib\site-packages\sklearn\metrics\ranking.py in <module>()
34 from ..utils.sparsefuncs import count_nonzero
35 from ..exceptions import UndefinedMetricWarning
---> 36 from ..preprocessing import label_binarize
37
38 from .base import _average_binary_score
D:\Anaconda_details\lib\site-packages\sklearn\preprocessing\__init__.py in <module>()
4 """
5
----> 6 from ._function_transformer import FunctionTransformer
7
8 from .data import Binarizer
D:\Anaconda_details\lib\site-packages\sklearn\preprocessing\_function_transformer.py in <module>()
3 from ..base import BaseEstimator, TransformerMixin
4 from ..utils import check_array
----> 5 from ..utils.testing import assert_allclose_dense_sparse
6 from ..externals.six import string_types
7
D:\Anaconda_details\lib\site-packages\sklearn\utils\testing.py in <module>()
758 import pytest
759
--> 760 skip_if_32bit = pytest.mark.skipif(_IS_32BIT,
761 reason='skipped on 32bit platforms')
762 skip_travis = pytest.mark.skipif(os.environ.get('TRAVIS') == 'true',
AttributeError: module 'pytest' has no attribute 'mark'
I have tried install/uninstall using pip
pip uninstall scikit-learn
pip install scikit-learn
(base) C:\Users\shashi>pip install scikit-learn
I am not able to uninstall sckit-learn package, it seems to be some path issue,
(base) C:\Users\shashi>pip uninstall scikit-learn
Uninstalling scikit-learn-0.20.0:
Would remove:
d:\anaconda_details\lib\site-packages\scikit_learn-0.20.0-py3.5.egg-info
d:\anaconda_details\lib\site-packages\sklearn
Proceed (y/n)? y
Exception:
Traceback (most recent call last):
File "D:\Anaconda_details\lib\shutil.py", line 544, in move
os.rename(src, real_dst)
OSError: [WinError 17] The system cannot move the file to a different disk drive: 'd:\\anaconda_details\\lib\\site-packages\\sklearn' -> 'C:\\Users\\sh289528\\AppData\\Local\\Temp\\pip-uninstall-w3d2aqtz\\anaconda_details\\lib\\site-packages\\sklearn'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "D:\Anaconda_details\lib\site-packages\pip\_internal\basecommand.py", line 228, in main
status = self.run(options, args)
File "D:\Anaconda_details\lib\site-packages\pip\_internal\commands\uninstall.py", line 68, in run
auto_confirm=options.yes, verbose=self.verbosity > 0,
File "D:\Anaconda_details\lib\site-packages\pip\_internal\req\req_install.py", line 661, in uninstall
uninstalled_pathset.remove(auto_confirm, verbose)
File "D:\Anaconda_details\lib\site-packages\pip\_internal\req\req_uninstall.py", line 219, in remove
renames(path, new_path)
File "D:\Anaconda_details\lib\site-packages\pip\_internal\utils\misc.py", line 273, in renames
shutil.move(old, new)
File "D:\Anaconda_details\lib\shutil.py", line 556, in move
rmtree(src)
File "D:\Anaconda_details\lib\shutil.py", line 494, in rmtree
return _rmtree_unsafe(path, onerror)
File "D:\Anaconda_details\lib\shutil.py", line 384, in _rmtree_unsafe
_rmtree_unsafe(fullname, onerror)
File "D:\Anaconda_details\lib\shutil.py", line 389, in _rmtree_unsafe
onerror(os.unlink, fullname, sys.exc_info())
File "D:\Anaconda_details\lib\shutil.py", line 387, in _rmtree_unsafe
os.unlink(fullname)
PermissionError: [WinError 5] Access is denied: 'd:\\anaconda_details\\lib\\site-packages\\sklearn\\feature_extraction\\_hashing.cp35-win_amd64.pyd'
You are using pip version 18.0, however version 19.0.3 is available.
You should consider upgrading via the 'python -m pip install --upgrade pip' command.
I am getting error again when i try to pip install.
(base) C:\Users\shashi>pip install scikit-learn
Collecting scikit-learn
Downloading https://files.pythonhosted.org/packages/d3/fa/b50821115c16e9b8ca307d3788e3dd1ec71cade3e564953ed7330a1fa3e0/scikit_learn-0.20.3-cp35-cp35m-win_amd64.whl (4.8MB)
100% |################################| 4.8MB 546kB/s
Requirement already satisfied: scipy>=0.13.3 in d:\anaconda_details\lib\site-packages (from scikit-learn) (1.1.0)
Requirement already satisfied: numpy>=1.8.2 in d:\anaconda_details\lib\site-packages (from scikit-learn) (1.15.2)
twisted 18.7.0 requires PyHamcrest>=1.9.0, which is not installed.
Installing collected packages: scikit-learn
Could not install packages due to an EnvironmentError: [WinError 5] Access is denied: 'D:\\Anaconda_details\\Lib\\site-packages\\sklearn\\feature_extraction\\_hashing.cp35-win_amd64.pyd'
Consider using the `--user` option or check the permissions.
You are using pip version 18.0, however version 19.0.3 is available.
You should consider upgrading via the 'python -m pip install --upgrade pip' command.
I have tried with conda uninstall and install. but that didn't help me either.
(base) C:\Users\shashi>conda update scikit-learn
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.5.5
latest version: 4.6.9
Please update conda by running
$ conda update -n base -c defaults conda
Related
Basically, I am trying to generate simple word cloud using Python on Windows. Hence, I have installed wordcloud as:
pip install wordcloud
I am trying to run the simplest example from here as below:
import os
from os import path
from wordcloud import WordCloud
# get data directory (using getcwd() is needed to support running example in generated IPython notebook)
d = path.dirname(__file__) if "__file__" in locals() else os.getcwd()
# Read the whole text.
text = open(path.join(d, 'constitution.txt')).read()
# Generate a word cloud image
wordcloud = WordCloud().generate(text)
# Display the generated image:
# the matplotlib way:
import matplotlib.pyplot as plt
plt.imshow(wordcloud, interpolation='bilinear')
plt.axis("off")
# lower max_font_size
wordcloud = WordCloud(max_font_size=40).generate(text)
plt.figure()
plt.imshow(wordcloud, interpolation="bilinear")
plt.axis("off")
plt.show()
The error I got:
Traceback (most recent call last):
File "C:\Users\XXXXX\test_wordcloud.py", line 13, in <module>
wordcloud = WordCloud().generate(text)
File "C:\Anaconda3\lib\site-packages\wordcloud\wordcloud.py", line 639, in generate
return self.generate_from_text(text)
File "C:\Anaconda3\lib\site-packages\wordcloud\wordcloud.py", line 621, in generate_from_text
self.generate_from_frequencies(words)
File "C:\Anaconda3\lib\site-packages\wordcloud\wordcloud.py", line 454, in generate_from_frequencies
max_font_size=self.height)
File "C:\Anaconda3\lib\site-packages\wordcloud\wordcloud.py", line 503, in generate_from_frequencies
font = ImageFont.truetype(self.font_path, font_size)
File "C:\Anaconda3\lib\site-packages\PIL\ImageFont.py", line 959, in truetype
return freetype(font)
File "C:\Anaconda3\lib\site-packages\PIL\ImageFont.py", line 956, in freetype
return FreeTypeFont(font, size, index, encoding, layout_engine)
File "C:\Anaconda3\lib\site-packages\PIL\ImageFont.py", line 219, in __init__
if core.HAVE_RAQM:
File "C:\Anaconda3\lib\site-packages\PIL\ImageFont.py", line 58, in __getattr__
raise ImportError("The _imagingft C module is not installed")
ImportError: The _imagingft C module is not installed
The PIL and Python versions on my side are:
from PIL import Image, ImageDraw, ImageFilter, ImageFont
print('PIL',PIL.__version__)
import sys
print(sys.version)
as:
PIL 9.2.0
3.7.13 (default, Mar 28 2022, 08:03:21) [MSC v.1916 64 bit (AMD64)]
Any suggestions ?
Thanks
On Windows 10, install the FreeType binding. Hopefully, it is resolved by re-installing the Pillow with disabling the pip cache as:
pip install freetype-py
pip uninstall pillow
pip install --no-cache-dir pillow
Once pillow is recompiled, everything worked properly for me!
In addition, the following check:
from PIL import features
print(features.check('freetype2'))
was False before the recent PIL re-installation. However, it is converted
into True after above listed steps. By the way, no need to reboot!
My issue is about the import of scipy
Reproducing code example:
import scipy
Error message:
Traceback (most recent call last):
File "D:/Projects/gait/tests/__init__.py", line 2, in <module>
import scipy
File "C:\Users\Leynier\AppData\Local\Programs\Python\Python37-32\lib\site-packages\scipy\__init__.py", line 110, in <module>
from scipy._lib._version import NumpyVersion as _NumpyVersion
File "C:\Users\Leynier\AppData\Local\Programs\Python\Python37-32\lib\site-packages\scipy\_lib\__init__.py", line 14, in <module>
from scipy._lib._testutils import PytestTester
ValueError: source code string cannot contain null bytes
Process finished with exit code 1
Scipy/Numpy/Python version information:
Scipy version: 1.3.0
Numpy version: 1.16.4
Python version: 3.7.3
OS: Windows 10
I have anaconda python3 kernel with pytorch and numpy installed in the environment. In jupyter notebook first line 'import torch' produces error.
I am using anaconda navigator to launch jupyter notebook and enter my environment and see pytorch is installed but not being imported. Tried various dir extensions 'from torch... import * but more error
import torch
ImportError Traceback (most recent call last)
<ipython-input-1-20507c95d9af> in <module>
1
----> 2 import torch
3
4
~/anaconda3/envs/udacity1/lib/python3.6/site-packages/torch/__init__.py in <module>
100 pass
101
--> 102 from torch._C import *
103
104 __all__ += [name for name in dir(_C)
ImportError: /home/frida/anaconda3/envs/udacity1/lib/python3.6/site-packages/torch/lib/libtorch.so.1: undefined symbol: nvrtcGetProgramLogSize
I was able to add this to the end of my path to establish a 'backend ' for my notebook kernel. Thanks to Kris Stern!
-m ipykernel install --user
first get your kernel path with
(which python3)
then connect it using
sudo (your path)/anaconda3/bin/python3 -m ipykernel install --user
I just downloaded scikit-image and I got an error message by simply trying to import the packages to run a tutorial example of the scikit website ("Gabor filter banks for texture classification"). See error message below.
I re-installed libtiff (using pip and homebrew) and Pillow (using conda), following the advice of some scikit-image developers. But the problem persists. I have the latest version of pillow installed (4.2.1), and I made sure to uninstall PIL before, and to build pillow from source to install all the dependencies.
ImportError Traceback (most recent call last)
<ipython-input-1-6205bd0cfb9d> in <module>()
5 from scipy import ndimage as ndi
6
----> 7 from skimage import data
8 from skimage.util import img_as_float
9 from skimage.filters import gabor_kernel
/Applications/anaconda/lib/python2.7/site-packages/skimage/data/__init__.py in <module>()
14
15 from .. import data_dir
---> 16 from ..io import imread, use_plugin
17 from .._shared._warnings import expected_warnings
18 from ._binary_blobs import binary_blobs
/Applications/anaconda/lib/python2.7/site-packages/skimage/io/__init__.py in <module>()
5 """
6
----> 7 from .manage_plugins import *
8 from .sift import *
9 from .collection import *
/Applications/anaconda/lib/python2.7/site-packages/skimage/io/manage_plugins.py in <module>()
26 from glob import glob
27
---> 28 from .collection import imread_collection_wrapper
29
30
/Applications/anaconda/lib/python2.7/site-packages/skimage/io/collection.py in <module>()
10 import numpy as np
11 import six
---> 12 from PIL import Image
13
14 from ..external.tifffile import TiffFile
/Applications/anaconda/lib/python2.7/site-packages/PIL/Image.py in <module>()
54 # Also note that Image.core is not a publicly documented interface,
55 # and should be considered private and subject to change.
---> 56 from . import _imaging as core
57 if PILLOW_VERSION != getattr(core, 'PILLOW_VERSION', None):
58 raise ImportError("The _imaging extension was built for another "
ImportError: dlopen(/Applications/anaconda/lib/python2.7/site-
packages/PIL/_imaging.so, 2): Library not loaded: #rpath/libtiff.5.dylib
Referenced from: /Applications/anaconda/lib/python2.7/site-
packages/PIL/_imaging.so
Reason: Incompatible library version: _imaging.so requires version 8.0.0 or
later, but libtiff.5.dylib provides version 7.0.0
I recently made an update of IPython to 4.0.0 and installed Jupyter 4.0.6.
I wanted to use Ipython parallel, and after starting the engines in the notebook, I imported:
from IPython import parallel
And it fails:
~/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/IPython/utils/traitlets.py:5: UserWarning: IPython.utils.traitlets has moved to a top-level traitlets package.
warn("IPython.utils.traitlets has moved to a top-level traitlets package.")
~/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/IPython/utils/pickleutil.py:3: UserWarning: IPython.utils.pickleutil has moved to ipykernel.pickleutil
warn("IPython.utils.pickleutil has moved to ipykernel.pickleutil")
~/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/IPython/utils/jsonutil.py:3: UserWarning: IPython.utils.jsonutil has moved to jupyter_client.jsonutil
warn("IPython.utils.jsonutil has moved to jupyter_client.jsonutil")
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-5652e9e33a4d> in <module>()
----> 1 from IPython import parallel
~/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/IPython/parallel/__init__.py in <module>()
31
32 from .client.asyncresult import *
---> 33 from .client.client import Client
34 from .client.remotefunction import *
35 from .client.view import *
~/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/IPython/parallel/client/client.py in <module>()
38 from IPython.utils.capture import RichOutput
39 from IPython.utils.coloransi import TermColors
---> 40 from IPython.utils.jsonutil import rekey, extract_dates, parse_date
41 from IPython.utils.localinterfaces import localhost, is_local_ip
42 from IPython.utils.path import get_ipython_dir
ImportError: cannot import name rekey
So I tried:
pip install rekey
But no distribution were found.
Note that it fails the same way in the notebook, be it open with ipython notebook or jupyter notebook, and in the console.
Also note that there is a warning:
UserWarning: IPython.utils.jsonutil has moved to jupyter_client.jsonutil
But rekey does not exist in the module jupyter_client.jsonutil
Question: How can I have IPython parallel to work within Jupyter ?
What am I missing ?
I found the problem I think (at least it works):
First, I had to import ipyparallel instead of IPython.parallel
See here: http://jupyter.readthedocs.org/en/latest/migrating.html#imports
EDIT: I get this OSError, but the fix was apparently useless, and it works without. I still don't get why I had this error, though.
Then, I had another error, when starting the client:
OSError: Connection file '~/.ipython/profile_default/security/ipcontroller-client.json' not found.
You have attempted to connect to an IPython Cluster but no Controller could be found.
Please double-check your configuration and ensure that a cluster is running.
So I just copy the directory ~/.ipython/profile_default to ~/.jupyter/profile_default
And it works!