While bringing up one of the application we are making some calls to DB, but i could see that those calls are failing with below exception,
org.osgi.service.coordinator.CoordinationException: Coordination failed
at org.apache.felix.coordinator.impl.CoordinationImpl.end(CoordinationImpl.java:255)
at org.apache.felix.coordinator.impl.CoordinationHolder.end(CoordinationHolder.java:56)
at org.apache.aries.jpa.blueprint.impl.JpaInterceptor.postCallWithReturn(JpaInterceptor.java:93)
at org.apache.aries.blueprint.proxy.Collaborator.postInvoke(Collaborator.java:98)
at Proxya2d2cd71_d4e4_434e_a965_b48799d154f7.findById(Unknown Source)
at
..............
Caused by: java.lang.Exception: ORPHANED
at org.osgi.service.coordinator.Coordination.<clinit>(Coordination.java:88)
at org.apache.felix.coordinator.impl.CoordinationHolder.finalize(CoordinationHolder.java:178)
at java.lang.System$2.invokeFinalize(System.java:1270)
at java.lang.ref.Finalizer.runFinalizer(Finalizer.java:98)
at java.lang.ref.Finalizer.access$100(Finalizer.java:34)
at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:210)
Any information about this "java.lang.Exception: ORPHANED"
Related
I am getting the following error while analysing using solar lint
Error during execution of SonarLint analysis
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: Unable to load component class org.sonarsource.sonarlint.core.analysis.container.analysis.sensor.SensorsExecutor
at java.base/java.util.concurrent.CompletableFuture.reportGet(CompletableFuture.java:396)
at java.base/java.util.concurrent.CompletableFuture.get(CompletableFuture.java:2073)
at org.sonarsource.sonarlint.core.ConnectedSonarLintEngineImpl.analyze(ConnectedSonarLintEngineImpl.java:248)
at org.sonarlint.eclipse.core.internal.engine.connected.ConnectedEngineFacade.lambda$1(ConnectedEngineFacade.java:316)
at org.sonarlint.eclipse.core.internal.engine.connected.ConnectedEngineFacade.withEngine(ConnectedEngineFacade.java:175)
at org.sonarlint.eclipse.core.internal.engine.connected.ConnectedEngineFacade.runAnalysis(ConnectedEngineFacade.java:315)
at org.sonarlint.eclipse.core.internal.jobs.AnalyzeConnectedProjectJob.runAnalysis(AnalyzeConnectedProjectJob.java:70)
at org.sonarlint.eclipse.core.internal.jobs.AnalyzeConnectedProjectJob.runAnalysis(AnalyzeConnectedProjectJob.java:1)
at org.sonarlint.eclipse.core.internal.jobs.AbstractAnalyzeProjectJob.run(AbstractAnalyzeProjectJob.java:393)
at org.sonarlint.eclipse.core.internal.jobs.AbstractAnalyzeProjectJob.runAnalysisAndUpdateMarkers(AbstractAnalyzeProjectJob.java:201)
at org.sonarlint.eclipse.core.internal.jobs.AbstractAnalyzeProjectJob.doRun(AbstractAnalyzeProjectJob.java:157)
at org.sonarlint.eclipse.core.internal.jobs.AbstractSonarProjectJob.run(AbstractSonarProjectJob.java:45)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
Caused by: java.lang.IllegalStateException: Unable to load component class org.sonarsource.sonarlint.core.analysis.container.analysis.sensor.SensorsExecutor
at org.sonarsource.sonarlint.core.plugin.commons.pico.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:57)
at org.sonarsource.sonarlint.shaded.org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:678)
at org.sonarsource.sonarlint.core.plugin.commons.pico.ComponentContainer.getComponentByType(ComponentContainer.java:249)
at org.sonarsource.sonarlint.core.analysis.container.analysis.AnalysisContainer.doAfterStart(AnalysisContainer.java:122)
at org.sonarsource.sonarlint.core.plugin.commons.pico.ComponentContainer.startComponents(ComponentContainer.java:119)
at org.sonarsource.sonarlint.core.plugin.commons.pico.ComponentContainer.execute(ComponentContainer.java:104)
at org.sonarsource.sonarlint.core.analysis.container.module.ModuleContainer.analyze(ModuleContainer.java:71)
at org.sonarsource.sonarlint.core.analysis.command.AnalyzeCommand.execute(AnalyzeCommand.java:58)
at org.sonarsource.sonarlint.core.analysis.command.AnalyzeCommand.execute(AnalyzeCommand.java:32)
at org.sonarsource.sonarlint.core.analysis.AnalysisEngine$AsyncCommand.execute(AnalysisEngine.java:150)
at org.sonarsource.sonarlint.core.analysis.AnalysisEngine.executeQueuedCommands(AnalysisEngine.java:70)
at java.base/java.lang.Thread.run(Thread.java:833)
Spark 3.0 on Kubernetes reading data from Kafka and pushing data out using via 3rd party Segment IO REST API.
I am facing below error while running an Spark stream job
Caused by: java.io.IOException: Cannot run program "chmod": error=11, Resource temporarily unavailable
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
at org.apache.hadoop.util.Shell.runCommand(Shell.java:938)
at org.apache.hadoop.util.Shell.run(Shell.java:901)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:1213)
at org.apache.hadoop.util.Shell.execCommand(Shell.java:1307)
at org.apache.hadoop.util.Shell.execCommand(Shell.java:1289)
at org.apache.hadoop.fs.RawLocalFileSystem.setPermission(RawLocalFileSystem.java:865)
at org.apache.hadoop.fs.RawLocalFileSystem$LocalFSFileOutputStream.<init>(RawLocalFileSystem.java:252)
at org.apache.hadoop.fs.RawLocalFileSystem$LocalFSFileOutputStream.<init>(RawLocalFileSystem.java:232)
at org.apache.hadoop.fs.RawLocalFileSystem.createOutputStreamWithMode(RawLocalFileSystem.java:331)
at org.apache.hadoop.fs.RawLocalFileSystem.create(RawLocalFileSystem.java:320)
at org.apache.hadoop.fs.RawLocalFileSystem.create(RawLocalFileSystem.java:351)
at org.apache.hadoop.fs.FileSystem.primitiveCreate(FileSystem.java:1228)
at org.apache.hadoop.fs.DelegateToFileSystem.createInternal(DelegateToFileSystem.java:100)
at org.apache.hadoop.fs.ChecksumFs$ChecksumFSOutputSummer.<init>(ChecksumFs.java:353)
at org.apache.hadoop.fs.ChecksumFs.createInternal(ChecksumFs.java:400)
at org.apache.hadoop.fs.AbstractFileSystem.create(AbstractFileSystem.java:605)
at org.apache.hadoop.fs.FileContext$3.next(FileContext.java:696)
at org.apache.hadoop.fs.FileContext$3.next(FileContext.java:692)
at org.apache.hadoop.fs.FSLinkResolver.resolve(FSLinkResolver.java:90)
at org.apache.hadoop.fs.FileContext.create(FileContext.java:698)
at org.apache.spark.sql.execution.streaming.FileContextBasedCheckpointFileManager.createTempFile(CheckpointFileManager.scala:310)
at org.apache.spark.sql.execution.streaming.CheckpointFileManager$RenameBasedFSDataOutputStream.<init>(CheckpointFileManager.scala:133)
at org.apache.spark.sql.execution.streaming.CheckpointFileManager$RenameBasedFSDataOutputStream.<init>(CheckpointFileManager.scala:136)
at org.apache.spark.sql.execution.streaming.FileContextBasedCheckpointFileManager.createAtomic(CheckpointFileManager.scala:316)
at org.apache.spark.sql.execution.streaming.HDFSMetadataLog.writeBatchToFile(HDFSMetadataLog.scala:131)
at org.apache.spark.sql.execution.streaming.HDFSMetadataLog.$anonfun$add$3(HDFSMetadataLog.scala:120)
at scala.runtime.java8.JFunction0$mcZ$sp.apply(JFunction0$mcZ$sp.java:23)
at scala.Option.getOrElse(Option.scala:189)
at org.apache.spark.sql.execution.streaming.HDFSMetadataLog.add(HDFSMetadataLog.scala:118)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.$anonfun$runBatch$17(MicroBatchExecution.scala:588)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.withProgressLocked(MicroBatchExecution.scala:598)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.runBatch(MicroBatchExecution.scala:585)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.$anonfun$runActivatedStream$2(MicroBatchExecution.scala:223)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.sql.execution.streaming.ProgressReporter.reportTimeTaken(ProgressReporter.scala:352)
at org.apache.spark.sql.execution.streaming.ProgressReporter.reportTimeTaken$(ProgressReporter.scala:350)
at org.apache.spark.sql.execution.streaming.StreamExecution.reportTimeTaken(StreamExecution.scala:69)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.$anonfun$runActivatedStream$1(MicroBatchExecution.scala:191)
at org.apache.spark.sql.execution.streaming.ProcessingTimeExecutor.execute(TriggerExecutor.scala:57)
at org.apache.spark.sql.execution.streaming.MicroBatchExecution.runActivatedStream(MicroBatchExecution.scala:185)
at org.apache.spark.sql.execution.streaming.StreamExecution.org$apache$spark$sql$execution$streaming$StreamExecution$$runStream(StreamExecution.scala:334)
... 1 more
Caused by: java.io.IOException: error=11, Resource temporarily unavailable
at java.lang.UNIXProcess.forkAndExec(Native Method)
at java.lang.UNIXProcess.<init>(UNIXProcess.java:247)
at java.lang.ProcessImpl.start(ProcessImpl.java:134)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
Check your PATH Environment Variable.
(Maybe you override it to add some spark/kafka jars to path?)
I've created a small project which combines Spring Data, a JPA Repository, EJB/CDI and either Wildfly Swarm or plain Wildfly.
The REST resource (an EJB) calls a CDI bean which has a Spring Data JPA Repository injected.
The initial request to the repository ends in an exception, but subsequent calls work just fine.
2016-12-15 23:03:09,690 WARN [org.hibernate.engine.jdbc.spi.SqlExceptionHelper] (default task-1) SQL Error: 0, SQLState: null
2016-12-15 23:03:09,690 ERROR [org.hibernate.engine.jdbc.spi.SqlExceptionHelper] (default task-1) javax.resource.ResourceException: IJ000460: Error checking for a transaction
2016-12-15 23:03:10,268 ERROR [io.undertow.request] (default task-1) UT005023: Exception handling request to /Penny: org.jboss.resteasy.spi.UnhandledException: javax.transaction.RollbackException: ARJUNA016053: Could not commit transaction.
...
Caused by: javax.transaction.RollbackException: ARJUNA016053: Could not commit transaction.
...
Caused by: java.lang.Throwable: setRollbackOnly called from:
at com.arjuna.ats.internal.jta.transaction.arjunacore.TransactionImple.setRollbackOnly(TransactionImple.java:339)
at com.arjuna.ats.internal.jta.transaction.arjunacore.BaseTransaction.setRollbackOnly(BaseTransaction.java:159)
at com.arjuna.ats.jbossatx.BaseTransactionManagerDelegate.setRollbackOnly(BaseTransactionManagerDelegate.java:143)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.markForRollbackOnly(AbstractEntityManagerImpl.java:1509)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1611)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.buildQueryFromName(AbstractEntityManagerImpl.java:753)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.createNamedQuery(AbstractEntityManagerImpl.java:730)
at org.springframework.data.jpa.repository.query.NamedQuery.hasNamedQuery(NamedQuery.java:99)
at org.springframework.data.jpa.repository.query.NamedQuery.lookupFrom(NamedQuery.java:121)
at org.springframework.data.jpa.repository.query.JpaQueryLookupStrategy$DeclaredQueryLookupStrategy.resolveQuery(JpaQueryLookupStrategy.java:162)
at org.springframework.data.jpa.repository.query.JpaQueryLookupStrategy$CreateIfNotFoundQueryLookupStrategy.resolveQuery(JpaQueryLookupStrategy.java:212)
at org.springframework.data.jpa.repository.query.JpaQueryLookupStrategy$AbstractQueryLookupStrategy.resolveQuery(JpaQueryLookupStrategy.java:77)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.<init>(RepositoryFactorySupport.java:435)
at org.springframework.data.repository.core.support.RepositoryFactorySupport.getRepository(RepositoryFactorySupport.java:220)
at org.springframework.data.jpa.repository.cdi.JpaRepositoryBean.create(JpaRepositoryBean.java:73)
at org.springframework.data.repository.cdi.CdiRepositoryBean.create(CdiRepositoryBean.java:372)
at org.springframework.data.repository.cdi.CdiRepositoryBean.create(CdiRepositoryBean.java:170)
at org.jboss.weld.context.AbstractContext.get(AbstractContext.java:96)
at org.jboss.weld.bean.ContextualInstanceStrategy$DefaultContextualInstanceStrategy.get(ContextualInstanceStrategy.java:101)
at org.jboss.weld.bean.ContextualInstance.get(ContextualInstance.java:50)
at org.jboss.weld.bean.proxy.ContextBeanInstance.getInstance(ContextBeanInstance.java:99)
at org.jboss.weld.bean.proxy.ProxyMethodHandler.invoke(ProxyMethodHandler.java:99)
at ch.maxant.demo.swarmproblems.EmployeeService.findByName(EmployeeService.java)
at ch.maxant.demo.swarmproblems.EmployeeService$Proxy$_$$_WeldClientProxy.findByName(Unknown Source)
at ch.maxant.demo.swarmproblems.EmployeeResource.get(EmployeeResource.java)
Debugging, I found out that org.springframework.data.jpa.respository.query.NamedQuery#lookupFrom ends up calling
through to org.hibernate.jpa.spi.AbstractentityManagerImpl#buildQueryfromName which seems to throw an
IllegalArgumentException: No query defined for that name [Employee.findByName]. That kind of makes sense, in that
Spring appears to be loading the named query lazily.
Is this a bug in Spring or is the application not setup properly?
A different project which uses JBoss Wildfly (8) has the same problem: https://github.com/maxant/jee7webappwithspringdata.
I get the following error when trying to deploy my war file
{
"WFLYCTL0080: Failed services" => {
"jboss.undertow.deployment.default-server.default-host./dmp" => "org.jboss.msc.service.StartException in service jboss.undertow.deployment.default-server.default-host./dmp: javax.ejb.EJBException: java.lang.IllegalStateException: WFLYEE0042: Failed to construct component instance Caused by: javax.ejb.EJBException: java.lang.IllegalStateException: WFLYEE0042: Failed to construct component instance Caused by: java.lang.IllegalStateException: WFLYEE0042: Failed to construct component instance Caused by: javax.ejb.EJBTransactionRolledbackException: org.hibernate.exception.SQLGrammarException: could not extract ResultSet Caused by: javax.persistence.PersistenceException: org.hibernate.exception.SQLGrammarException: could not extract ResultSet Caused by: org.hibernate.exception.SQLGrammarException: could not extract ResultSet Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'portcall.Actor' doesn't exist"
}
}
Could anyone please advise on what the issue is?
P.S he war is supposed to create the DB structure on it own , the DB already exists with sufficient privileges.
Regards
Nick
Im using XWIKI ENTERPRISE 2.5 and want to upgrade it to 4.4 or 4.3 (stable)
I found this upgrade documentation for XWiki. Following the guide, I backed up the important files in WEB-INF.
After that, I copied all the files from the new .war to my wiki directory (/var/lib/tomcat6/webapps/xwiki). Then, I moved back the important files and overwrote the new files.
I get this error message, when I visit my wiki page:
HTTP Status 404 - type Status report
message description
The requested resource () is not available.
Apache Tomcat/6.0.28
Here is the logfile:
SCHWERWIEGEND: Exception sending context initialized event to listener instance of class org.xwiki.container.servlet.XWikiServletContextListener
java.lang.RuntimeException: Failed to find the Observation Manager component
at org.xwiki.container.servlet.XWikiServletContextListener.contextInitialized(XWikiServletContextListener.java:101)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4135)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1041)
at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:964)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:502)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
at org.apache.catalina.core.StandardHost.start(StandardHost.java:785)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445)
at org.apache.catalina.core.StandardService.start(StandardService.java:519)
at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
at org.apache.catalina.startup.Catalina.start(Catalina.java:581)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.xwiki.observation.internal.DefaultObservationManager] identifier by [role = [interface org.xwiki.observation.ObservationManager] hint = [default]]
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:348)
at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:155)
at org.xwiki.container.servlet.XWikiServletContextListener.contextInitialized(XWikiServletContextListener.java:99)
... 24 more
Caused by: org.xwiki.component.phase.InitializationException: Failed to lookup Event Listeners
at org.xwiki.observation.internal.DefaultObservationManager.initialize(DefaultObservationManager.java:139)
at org.xwiki.component.embed.InitializableLifecycleHandler.handle(InitializableLifecycleHandler.java:39)
at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:323)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:378)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:346)
... 26 more
Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [role = [interface org.xwiki.observation.EventListener] hint = [default]]
at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:187)
at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceList(EmbeddableComponentManager.java:169)
at org.xwiki.observation.internal.DefaultObservationManager.initialize(DefaultObservationManager.java:135)
... 30 more
Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.xwiki.security.authorization.cache.internal.DefaultSecurityCache] identifier by [role = [interface org.xwiki.security.authorization.cache.SecurityCache] hint = [default]]
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:348)
at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:161)
at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:312)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:378)
at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:185)
... 32 more
Caused by: org.xwiki.component.phase.InitializationException: Unable to create the security cache with a capacity of 500
at org.xwiki.security.authorization.cache.internal.DefaultSecurityCache.newCache(DefaultSecurityCache.java:104)
at org.xwiki.security.authorization.cache.internal.DefaultSecurityCache.initialize(DefaultSecurityCache.java:112)
at org.xwiki.component.embed.InitializableLifecycleHandler.handle(InitializableLifecycleHandler.java:39)
at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:323)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:378)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:346)
... 36 more
Caused by: org.xwiki.cache.CacheException: Failed to get cache factory for role hint [infinispan]
at org.xwiki.cache.internal.DefaultCacheManager.createNewCache(DefaultCacheManager.java:109)
at org.xwiki.cache.internal.DefaultCacheManager.createNewCache(DefaultCacheManager.java:85)
at org.xwiki.security.authorization.cache.internal.DefaultSecurityCache.newCache(DefaultSecurityCache.java:102)
... 41 more
Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.xwiki.cache.infinispan.internal.InfinispanCacheFactory] identifier by [role = [interface org.xwiki.cache.CacheFactory] hint = [infinispan]]
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:348)
at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:161)
at org.xwiki.cache.internal.DefaultCacheManager.createNewCache(DefaultCacheManager.java:107)
... 43 more
Caused by: org.infinispan.jmx.JmxDomainConflictException: Domain already registered org.xwiki.infinispan
at org.infinispan.jmx.JmxUtil.buildJmxDomain(JmxUtil.java:73)
at org.infinispan.jmx.CacheManagerJmxRegistration.updateDomain(CacheManagerJmxRegistration.java:92)
at org.infinispan.jmx.CacheManagerJmxRegistration.buildRegistrar(CacheManagerJmxRegistration.java:86)
at org.infinispan.jmx.AbstractJmxRegistration.registerMBeans(AbstractJmxRegistration.java:46)
at org.infinispan.jmx.CacheManagerJmxRegistration.start(CacheManagerJmxRegistration.java:62)
at org.infinispan.manager.DefaultCacheManager.start(DefaultCacheManager.java:720)
at org.infinispan.manager.DefaultCacheManager.<init>(DefaultCacheManager.java:388)
at org.infinispan.manager.DefaultCacheManager.<init>(DefaultCacheManager.java:353)
at org.xwiki.cache.infinispan.internal.InfinispanCacheFactory.initialize(InfinispanCacheFactory.java:104)
at org.xwiki.component.embed.InitializableLifecycleHandler.handle(InitializableLifecycleHandler.java:39)
at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:323)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:378)
at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:346)
... 45 more
When you say that
I copied all the files from the new .war to my wiki directory
Did you copy the new files over the existing directory? You're supposed to delete everything from the old version and use only the files from the new version, and only copy from the backup the essential configuration files. Also, note that you're not supposed to just copy the old configuration, but merge your custom settings into the default new configuration.
The root error in the stack trace:
Caused by: org.infinispan.jmx.JmxDomainConflictException: Domain already registered org.xwiki.infinispan
suggest a duplicate jar. The other case when this could occur is when you have more than one instance of XWiki in the same container, in which case you should edit WEB-INF/cache/infinispan/config.xml, and replace the line jmxDomain="org.xwiki.infinispan" with a unique value, like jmxDomain="org.xwiki.infinispan.wiki1" and jmxDomain="org.xwiki.infinispan.wiki2" for the two instances.
I've been having the same problem when upgrading from 4.0-rc-1 to 4.4 or 4.5. I have no duplicate jars nor am I running several instances of XWiki. It may be there is an issue either in infinispan or in XWiki's cache implementation.
A temporary workaround is to allow duplicate domains explicitly in config.xml :
<globalJmxStatistics
[...]
allowDuplicateDomains="true" />