Kubernetes - Scheduling pod replicas on nodes as per the resources available - kubernetes

I have a node with 64 cores and another one with just 8. I need multiple replicas of my Kubernetes pods ( at least 6 ) and my 8-core node can only handle 1 instance. How could I ask kubernetes to schedule the rest (5) on the more powerful node ?
It would be good if I could do a scale-up only on the required node, is that possible?

While kubernetes is intelligent to spread pods on nodes with enough resources (CPU cores in this case), the following ways can be used to fine-tune how pods can be spread/load-balanced on the nodes in a cluster:
Adding labels to nodes and pods
Resource requests and limits for pods
nodeSelector, node affinity/anti-affinity, nodeName
Horizontal Pod Autoscaler
K8s Descheduler

In general, you should use resources.requests definitions in your workload in order to let the scheduler know about the requirements of your application. With this way the scheduler will take care of scheduling the pods where there are resources available.

Related

GKE node pool with Autoscaling does not scale down

I have a GKE cluster with two nodepools. I turned on autoscaling on one of my nodepools but it does not seem to automatically scale down.
I have enabled HPA and that works fine. It scales the pods down to 1 when I don't see traffic.
The API is currently not getting any traffic so I would expect the nodes to scale down as well.
But it still runs the maximum 5 nodes despite some nodes using less than 50% of allocatable memory/CPU.
What did I miss here? I am planning to move these pods to bigger machines but to do that I need the node autoscaling to work to control the monthly cost.
There are many reasons that can cause CA to not be downscaling successfully. If we resume how this should work normally it will be something like this:
Cluster autoscaler will periodically check (every 10 seconds) utilization of the nodes.
If the utilization factor is less than 0.5 the node will be considered as under utilization.
Then the nodes will be marked for removal and will be monitored for next 10 mins to make sure the utilization factor stays less than 0.5.
If even after 10 mins it stays under utilized then the node would be removed by cluster autoscaler.
If above is not being accomplished, then something else is preventing your nodes to be downscaling. In my experience PDBs needs to be applied to kube-system pods and I would say that could be the reason why; however, there are many reasons why this can be happening, here are reasons that can cause downscaling issues:
1. PDB is not applied to your kube-system pods. Kube-system pods prevent Cluster Autoscaler from removing nodes on which they are running. You can manually add Pod Disruption Budget(PDBs) for the kube-system pods that can be safely rescheduled elsewhere, this can be added with next command:
`kubectl create poddisruptionbudget PDB-NAME --namespace=kube-system --selector app=APP-NAME --max-unavailable 1`
2. Containers using local storage (volumes), even empty volumes. Kubernetes prevents scale down events on nodes with pods using local storage. Look for this kind of configuration that prevents Cluster Autoscaler to scale down nodes.
3. Pods annotated with cluster-autoscaler.kubernetes.io/safe-to-evict: true. Look for pods with this annotation that can be preventing Nodes scaledown
4. Nodes annotated with cluster-autoscaler.kubernetes.io/scale-down-disabled: true. Look for Nodes with this annotation that can be preventing cluster Autoscale. These configurations are the ones I will suggest you check on, in order to make your cluster to be scaling down nodes that are under utilized. -----
Also you can see this page where explains the configuration to prevent the downscales, which can be what is happening to you.

Affinity - Only run x number of pods per node in Kubernetes?

I can only find documentation online for attaching pods to nodes based on labels.
Is there a way to attach pods to nodes based on labels and count - So only x pods with label y?
Our scenario is that we only want to run 3 of our API pods per node.
If a 4th API pod is created, it should be scheduled onto a different node with less than 3 API pods running currently.
Thanks
No, you can not schedule by count of a specific label. But you can avoid co-locate your pods on the same node.
Avoid co-locate your pods on same node
You can use podAntiAffinity and topologyKey and taints to avoid scheduling pods on the same node. See Never co-located in the same node

Kubernetes: Evenly distribute the replicas across the cluster

We can use DaemonSet object to deploy one replica on each node. How can we deploy say 2 replicas or 3 replicas per node? How can we achieve that. please let us know
There is no way to force x pods per node the way a Daemonset does. However, with some planning, you can force a fairly even pod distribution across your nodes using pod anti affinity.
Let's say we have 10 nodes. The first thing is we need to have a ReplicaSet (deployment) with 30 pods (3 per node). Next, we want to set the pod anti affinity to use preferredDuringSchedulingIgnoredDuringExecution with a relatively high weight and match the deployment's labels. This will cause the scheduler to prefer not scheduling pods where the same pod already exists. Once there is 1 pod per node, the cycle starts over again. A node with 2 pods will be weighted lower than one with 1 pod so the next pod should try to go there.
Note this is not as precise as a DaemonSet and may run into some limitations when it comes time to scale up or down the cluster.
A more reliable way if scaling the cluster is to simply create multiple DaemonSets with different names, but identical in every other way. Since the DaemonSets will have the same labels, they can all be exposed through the same service.
By default, the kubernetes scheduler will prefer to schedule pods on different nodes.
The kubernetes scheduler will first determine all possible nodes where a pod can be deployed based on your affinity/anti-affinity/resource limits/etc.
Afterward, the scheduler will find the best node where the pod can be deployed. The scheduler will automatically schedule the pods to be on separate availability zones and on separate nodes if this is possible of course.
You can try this on your own. For example, if you have 3 nodes, try deploying 9 replicas of a pod. You will see that each node will have 2 pods running.

Resizing a google cloud Kubernetes cluster to zero not working

I try to resize a kubernetes cluster to zero nodes using
gcloud container clusters resize $CLUSTER_NAME --size=0 --zone $ZONE
I get a success message but the size of the node-pool remains the same (I use only one node pool)
Is it possible to resize the cluster to zero?
Sometimes you just need to wait 10-20 minutes before autoscale operation takes effect.
In other cases, you may need to check if some conditions are met for downscaling the node.
According to autoscaler documentation:
Cluster autoscaler also measures the usage of each node against the node pool's total demand for capacity. If a node has had no new Pods scheduled on it for a set period of time, and all Pods running on that node can be scheduled onto other nodes in the pool, the autoscaler moves the Pods and deletes the node.
Note that cluster autoscaler works based on Pod resource requests, that is, how many resources your Pods have requested. Cluster autoscaler does not take into account the resources your Pods are actively using. Essentially, cluster autoscaler trusts that the Pod resource requests you've provided are accurate and schedules Pods on nodes based on that assumption.
Note: Beginning with Kubernetes version 1.7, you can specify a minimum size of zero for your node pool. This allows your node pool to scale down completely if the instances within aren't required to run your workloads. However, while a node pool can scale to a zero size, the overall cluster size does not scale down to zero nodes (as at least one node is always required to run system Pods)
Cluster autoscaler has following limitations:
- When scaling down, cluster autoscaler supports a graceful termination period for a Pod of up to 10 minutes. A Pod is always killed after a maximum of 10 minutes, even if the Pod is configured with a higher grace period.
Note: Every change you make to the cluster autoscaler causes the Kubernetes master to restart, which takes several minutes to complete.
However, there are cases mentioned in FAQ that can prevent CA from removing a node:
What types of pods can prevent CA from removing a node?
Pods with restrictive PodDisruptionBudget.
Kube-system pods that:
are not run on the node by default, *
don't have PDB or their PDB is too restrictive (since CA 0.6).
Pods that are not backed by a controller object (so not created by deployment, replica set, job, stateful set etc). *
Pods with local storage. *
Pods that cannot be moved elsewhere due to various constraints (lack of resources, non-matching node selectors or affinity, matching anti-affinity, etc)
*Unless the pod has the following annotation (supported in CA 1.0.3 or later):
"cluster-autoscaler.kubernetes.io/safe-to-evict": "true"
How can I scale my cluster to just 1 node?
Prior to version 0.6, Cluster Autoscaler was not touching nodes that were running important kube-system pods like DNS, Heapster, > Dashboard etc. If these pods landed on different nodes, CA could not scale the cluster down and the user could end up with a completely empty 3 node cluster. In 0.6, we added an option to tell CA that some system pods can be moved around. If the user configures a PodDisruptionBudget for the kube-system pod, then the default strategy of not touching the node running this pod is overridden with PDB settings. So, to enable kube-system pods migration, one should set minAvailable to 0 (or <= N if there are N+1 pod replicas.) See also I have a couple of nodes with low utilization, but they are not scaled down. Why?
How can I scale a node group to 0?
From CA 0.6 for GCE/GKE and CA 0.6.1 for AWS, it is possible to scale a node group to 0 (and obviously from 0), assuming that all scale-down conditions are met.
For AWS, if you are using nodeSelector, you need to tag the ASG with a node-template key "k8s.io/cluster-autoscaler/node-template/label/".
For example, for a node label of foo=bar, you would tag the ASG with:
{
"ResourceType": "auto-scaling-group",
"ResourceId": "foo.example.com",
"PropagateAtLaunch": true,
"Value": "bar",
"Key": "k8s.io/cluster-autoscaler/node-template/label/foo"
}

What's the purpose of Kubernetes DaemonSet when replication controllers have node anti-affinity

DaemonSet is a Kubernetes beta resource that can ensure that exactly one pod is scheduled to a group of nodes. The group of nodes is all nodes by default, but can be limited to a subset using nodeSelector or the Alpha feature of node affinity/anti-affinity.
It seems that DaemonSet functionality can be achieved with replication controllers/replica sets with proper node affinity and anti-affinity.
Am I missing something? If that's correct should DaemonSet be deprecated before it even leaves Beta?
As you said, DaemonSet guarantees one pod per node for a subset of the nodes in the cluster. If you use ReplicaSet instead, you need to
use the node affinity/anti-affinity and/or node selector to control the set of nodes to run on (similar to how DaemonSet does it).
use inter-pod anti-affinity to spread the pods across the nodes.
make sure the number of pods > number of node in the set, so that every node has one pod scheduled.
However, ensuring (3) is a chore as the set of nodes can change over time. With DaemonSet, you don't have to worry about that, nor would you need to create extra, unschedulable pods. On top of that, DaemonSet does not rely on the scheduler to assign its pods, which makes it useful for cluster bootstrap (see How Daemon Pods are scheduled).
See the "Alternative to DaemonSet" section in the DaemonSet doc for more comparisons. DaemonSet is still the easiest way to run a per-node daemon without external tools.