I created my first GitHub repository using GitHub Desktop (Windows). It is a real mess with many revisions that are quite meaningless and some versions of files that I would rather were never uploaded. This was the result of a lot of experimenting to get the feel for how things would appear on GitHub. I want to get rid of all the history versions.
I am tempted to just copy my files on my drive to another folder then delete the repository folder from my drive. Also delete it from GitHub.
Then create a new repository with GitHub Desktop, perhaps with the same name or with a different name then rename it to the original. Could it be a simple as that or will GitHub still retain the files somewhere?
I haven't tried this because in my searching I keep finding all the complex steps to be performed to remove histories or remove files.
I sort of feel that what I am proposing is too simple.
Any opinions?
All of this got too confusing.
I just did what I said in the start of the thread.
It seems GitHub Desktop has some Username/Password problem and won't let me "Publish branch".
So I went to GitHub and created a new repository and uploaded all the files from my local folder.
It looks good to me.
There may be problems in the future. I guess I'll cross that bridge when (if) I come to it.
An alternative approach is to switch to command line and:
delete the .git folder in your repository
recreate it (git init .)
reset the origin remote: git remote add origin https://github.com//
Make a first commit with your current content:
git add .
git commit -m "first commit"
overwrite everything on the remote repo
git push --force -u origin master
The end result will be the same repo but with only one commit.
You can then switch back to GitHub Desktop.
From here.
First make sure you have Git for Windows installed, you are going to need to do git commands manually sooner or later.
Go to your local repository on your computer where your project is located. It's a good idea to show hidden files so you can see that you have the .git-folder and that the .gitignore-file is in place.
Go to the folder where the .git-folder is, right-click and click git bash here.
Now enter these commands:
Create Orphan Branch – Create a new orphan branch in git repository. The newly created branch will not show in ‘git branch’ command.
git checkout --orphan temp_branch
Add Files to Branch – Now add all files to newly created branch and commit them using following commands. Don't forget .gitignore!
git add .
git commit -m "the first commit"
Delete master Branch – Now you can delete the master branch from your git repository.
git branch -D master
Rename Current Branch – After deleting the master branch, let’s rename newly created branch name to master.
git branch -m master
Push Changes – You have completed the changes to your local git repository. Finally, push your changes to the remote (Github) repository forcefully.
git push -f origin master
Git overview
I apologize if this seems like a newbie question, but I'm having some issues navigating through github. I understand the essentials of committing, pushing, peeling etc, but for some reason I can't figure out a few other essentials. If you could take a look at this link it's the GH repo I'm speaking of: https://github.com/AustinTice/JobInterviewAlgorithms . I have pushed new code to the file in the FizzBuzz directory, however the Algorithms/FizzBuzz directory and its containing folders are still on the remote repo although not on my local repo. I just need to know how to delete those directories, and how to essentially get better at rearranging the hierarchies of my repos.
In case clarification is needed, what I'm trying to do in the repo is have [Name of Algorithm] > [Language used to solve] > [Solution] and I need to know how to delete the whole directories, because I'm having some issues.
After deleting the folder, all you need to do is stage the changed and commit.
rm -rf Algorithms
git add <changed files>
git commit -m <commit message>
Once done, you can push the commit to the remote repository and the changes will be reflected on Github.
git push origin master
Let me know if this helps.
you should be able to delete the remote branch with following command
git push origin --delete Algorithms/FizzBuzz
I would like to put a Git project on GitHub but it contains certain files with sensitive data (usernames and passwords, like /config/deploy.rb for capistrano).
I know I can add these filenames to .gitignore, but this would not remove their history within Git.
I also don't want to start over again by deleting the /.git directory.
Is there a way to remove all traces of a particular file in your Git history?
For all practical purposes, the first thing you should be worried about is CHANGING YOUR PASSWORDS! It's not clear from your question whether your git repository is entirely local or whether you have a remote repository elsewhere yet; if it is remote and not secured from others you have a problem. If anyone has cloned that repository before you fix this, they'll have a copy of your passwords on their local machine, and there's no way you can force them to update to your "fixed" version with it gone from history. The only safe thing you can do is change your password to something else everywhere you've used it.
With that out of the way, here's how to fix it. GitHub answered exactly that question as an FAQ:
Note for Windows users: use double quotes (") instead of singles in this command
git filter-branch --index-filter \
'git update-index --remove PATH-TO-YOUR-FILE-WITH-SENSITIVE-DATA' <introduction-revision-sha1>..HEAD
git push --force --verbose --dry-run
git push --force
Update 2019:
This is the current code from the FAQ:
git filter-branch --force --index-filter \
"git rm --cached --ignore-unmatch PATH-TO-YOUR-FILE-WITH-SENSITIVE-DATA" \
--prune-empty --tag-name-filter cat -- --all
git push --force --verbose --dry-run
git push --force
Keep in mind that once you've pushed this code to a remote repository like GitHub and others have cloned that remote repository, you're now in a situation where you're rewriting history. When others try pull down your latest changes after this, they'll get a message indicating that the changes can't be applied because it's not a fast-forward.
To fix this, they'll have to either delete their existing repository and re-clone it, or follow the instructions under "RECOVERING FROM UPSTREAM REBASE" in the git-rebase manpage.
Tip: Execute git rebase --interactive
In the future, if you accidentally commit some changes with sensitive information but you notice before pushing to a remote repository, there are some easier fixes. If you last commit is the one to add the sensitive information, you can simply remove the sensitive information, then run:
git commit -a --amend
That will amend the previous commit with any new changes you've made, including entire file removals done with a git rm. If the changes are further back in history but still not pushed to a remote repository, you can do an interactive rebase:
git rebase -i origin/master
That opens an editor with the commits you've made since your last common ancestor with the remote repository. Change "pick" to "edit" on any lines representing a commit with sensitive information, and save and quit. Git will walk through the changes, and leave you at a spot where you can:
$EDITOR file-to-fix
git commit -a --amend
git rebase --continue
For each change with sensitive information. Eventually, you'll end up back on your branch, and you can safely push the new changes.
Changing your passwords is a good idea, but for the process of removing password's from your repo's history, I recommend the BFG Repo-Cleaner, a faster, simpler alternative to git-filter-branch explicitly designed for removing private data from Git repos.
Create a private.txt file listing the passwords, etc, that you want to remove (one entry per line) and then run this command:
$ java -jar bfg.jar --replace-text private.txt my-repo.git
All files under a threshold size (1MB by default) in your repo's history will be scanned, and any matching string (that isn't in your latest commit) will be replaced with the string "***REMOVED***". You can then use git gc to clean away the dead data:
$ git gc --prune=now --aggressive
The BFG is typically 10-50x faster than running git-filter-branch and the options are simplified and tailored around these two common use-cases:
Removing Crazy Big Files
Removing Passwords, Credentials & other Private data
Full disclosure: I'm the author of the BFG Repo-Cleaner.
git filter-repo is now officially recommended over git filter-branch
This is mentioned in the manpage of git filter-branch in Git 2.5 itself.
With git filter repo, you could either remove certain files with: Remove folder and its contents from git/GitHub's history
pip install git-filter-repo
git filter-repo --path path/to/remove1 --path path/to/remove2 --invert-paths
This automatically removes empty commits.
Or you can replace certain strings with: How to replace a string in whole Git history?
git filter-repo --replace-text <(echo 'my_password==>xxxxxxxx')
If you pushed to GitHub, force pushing is not enough, delete the repository or contact support
Even if you force push one second afterwards, it is not enough as explained below.
The only valid courses of action are:
is what leaked a changeable credential like a password?
yes: modify your passwords immediately, and consider using more OAuth and API keys!
no (naked pics):
do you care if all issues in the repository get nuked?
no: delete the repository
yes:
contact support
if the leak is very critical to you, to the point that you are willing to get some repository downtime to make it less likely to leak, make it private while you wait for GitHub support to reply to you
Force pushing a second later is not enough because:
GitHub keeps dangling commits for a long time.
GitHub staff does have the power to delete such dangling commits if you contact them however.
I experienced this first hand when I uploaded all GitHub commit emails to a repo they asked me to take it down, so I did, and they did a gc. Pull requests that contain the data have to be deleted however: that repo data remained accessible up to one year after initial takedown due to this.
Dangling commits can be seen either through:
the commit web UI: https://github.com/cirosantilli/test-dangling/commit/53df36c09f092bbb59f2faa34eba15cd89ef8e83 (Wayback machine)
the API: https://api.github.com/repos/cirosantilli/test-dangling/commits/53df36c09f092bbb59f2faa34eba15cd89ef8e83 (Wayback machine)
One convenient way to get the source at that commit then is to use the download zip method, which can accept any reference, e.g.: https://github.com/cirosantilli/myrepo/archive/SHA.zip
It is possible to fetch the missing SHAs either by:
listing API events with type": "PushEvent". E.g. mine: https://api.github.com/users/cirosantilli/events/public (Wayback machine)
more conveniently sometimes, by looking at the SHAs of pull requests that attempted to remove the content
There are scrappers like http://ghtorrent.org/ and https://www.githubarchive.org/ that regularly pool GitHub data and store it elsewhere.
I could not find if they scrape the actual commit diff, and that is unlikely because there would be too much data, but it is technically possible, and the NSA and friends likely have filters to archive only stuff linked to people or commits of interest.
If you delete the repository instead of just force pushing however, commits do disappear even from the API immediately and give 404, e.g. https://api.github.com/repos/cirosantilli/test-dangling-delete/commits/8c08448b5fbf0f891696819f3b2b2d653f7a3824 This works even if you recreate another repository with the same name.
To test this out, I have created a repo: https://github.com/cirosantilli/test-dangling and did:
git init
git remote add origin git#github.com:cirosantilli/test-dangling.git
touch a
git add .
git commit -m 0
git push
touch b
git add .
git commit -m 1
git push
touch c
git rm b
git add .
git commit --amend --no-edit
git push -f
See also: How to remove a dangling commit from GitHub?
I recommend this script by David Underhill, worked like a charm for me.
It adds these commands in addition natacado's filter-branch to clean up the mess it leaves behind:
rm -rf .git/refs/original/
git reflog expire --all
git gc --aggressive --prune
Full script (all credit to David Underhill)
#!/bin/bash
set -o errexit
# Author: David Underhill
# Script to permanently delete files/folders from your git repository. To use
# it, cd to your repository's root and then run the script with a list of paths
# you want to delete, e.g., git-delete-history path1 path2
if [ $# -eq 0 ]; then
exit 0
fi
# make sure we're at the root of git repo
if [ ! -d .git ]; then
echo "Error: must run this script from the root of a git repository"
exit 1
fi
# remove all paths passed as arguments from the history of the repo
files=$#
git filter-branch --index-filter \
"git rm -rf --cached --ignore-unmatch $files" HEAD
# remove the temporary history git-filter-branch
# otherwise leaves behind for a long time
rm -rf .git/refs/original/ && \
git reflog expire --all && \
git gc --aggressive --prune
The last two commands may work better if changed to the following:
git reflog expire --expire=now --all && \
git gc --aggressive --prune=now
You can use git forget-blob.
The usage is pretty simple git forget-blob file-to-forget. You can get more info here
https://ownyourbits.com/2017/01/18/completely-remove-a-file-from-a-git-repository-with-git-forget-blob/
It will disappear from all the commits in your history, reflog, tags and so on
I run into the same problem every now and then, and everytime I have to come back to this post and others, that's why I automated the process.
Credits to contributors from Stack Overflow that allowed me to put this together
Here is my solution in windows
git filter-branch --tree-filter "rm -f 'filedir/filename'" HEAD
git push --force
make sure that the path is correct
otherwise it won't work
I hope it helps
Use filter-branch:
git filter-branch --force --index-filter 'git rm --cached --ignore-unmatch *file_path_relative_to_git_repo*' --prune-empty --tag-name-filter cat -- --all
git push origin *branch_name* -f
To be clear: The accepted answer is correct. Try it first. However, it may be unnecessarily complex for some use cases, particularly if you encounter obnoxious errors such as 'fatal: bad revision --prune-empty', or really don't care about the history of your repo.
An alternative would be:
cd to project's base branch
Remove the sensitive code / file
rm -rf .git/ # Remove all git info from
your code
Go to github and delete your repository
Follow this guide to push your code to a new repository as you normally would -
https://help.github.com/articles/adding-an-existing-project-to-github-using-the-command-line/
This will of course remove all commit history branches, and issues from both your github repo, and your local git repo. If this is unacceptable you will have to use an alternate approach.
Call this the nuclear option.
In my android project I had admob_keys.xml as separated xml file in app/src/main/res/values/ folder. To remove this sensitive file I used below script and worked perfectly.
git filter-branch --force --index-filter \
'git rm --cached --ignore-unmatch app/src/main/res/values/admob_keys.xml' \
--prune-empty --tag-name-filter cat -- --all
I've had to do this a few times to-date. Note that this only works on 1 file at a time.
Get a list of all commits that modified a file. The one at the bottom will the the first commit:
git log --pretty=oneline --branches -- pathToFile
To remove the file from history use the first commit sha1 and the path to file from the previous command, and fill them into this command:
git filter-branch --index-filter 'git rm --cached --ignore-unmatch <path-to-file>' -- <sha1-where-the-file-was-first-added>..
So, It looks something like this:
git rm --cached /config/deploy.rb
echo /config/deploy.rb >> .gitignore
Remove cache for tracked file from git and add that file to .gitignore list
Considering that OP is using GitHub, if one commits sensitive data into a Git repo, one can remove it entirely from the history by using one of the previous options (read more about them below):
The git filter-repo tool (view source on GitHub).
The BFG Repo-Cleaner tool (it is open source - view source on GitHub).
After one of the previous options, there are additional steps to follow. Check the section Additional below.
If the goal is to remove a file that was added in the most recent unpushed commit, read the section Alternative below.
For future considerations, to prevent similar situations, check the For the Future section below.
Option 1
Using git filter-repo. Before moving forward, note that
If you run git filter-repo after stashing changes, you won't be able to retrieve your changes with other stash commands. Before running git filter-repo, we recommend unstashing any changes you've made. To unstash the last set of changes you've stashed, run git stash show -p | git apply -R. For more information, see Git Tools - Stashing and Cleaning.
Let us now remove one file from the history of one's repo and add it to .gitignore (to prevent re-committing it again).
Before moving forward, make sure that one has git filter-repo installed (read here how to install it), and that one has a local copy of one's repo (if that is not the case, see here how to clone a repository).
Open GitBash and access the repository.
cd YOUR-REPOSITORY
(Optional) Backup the .git/config file.
Run
git filter-repo --invert-paths --path PATH-TO-YOUR-FILE-WITH-SENSITIVE-DATA
replace PATH-TO-YOUR-FILE-WITH-SENSITIVE-DATA with the path to the file you want to remove, not just its filename to:
Force Git to process, but not check out the entire history of every branch and tag.
Remove the specified file (as well as empty commits generated as a result)
Remove some configs (such as remote URL stored in the .git/config file)
Overwrite one's existing tags.
Add the file with sensitive data to .gitignore
echo "YOUR-FILE-WITH-SENSITIVE-DATA" >> .gitignore
git add .gitignore
git commit -m "Add YOUR-FILE-WITH-SENSITIVE-DATA to .gitignore"
Check if everything was removed from one's repository history, and that all branches are checked out. Only then move to the next step.
Force-push the local changes to overwrite your repository on GitHub.com, as well as all the branches you've pushed up. A force push is required to remove sensitive data from your commit history. Read the first note at the bottom of this answer for more details one this.
git push origin --force --all
Option 2
Using BFG Repo-Cleaner. This is faster and simpler than git filter-branch.
For example, to remove one's file with sensitive data and leave your latest commit untouched, run
bfg --delete-files YOUR-FILE-WITH-SENSITIVE-DATA
To replace all text listed in passwords.txt wherever it can be found in your repository's history, run
bfg --replace-text passwords.txt
After the sensitive data is removed, one must force push one's changes to GitHub.
git push --force
Additional
After using one of the options above:
Contact GitHub Support.
(If working with a team) Tell them to rebase, not merge, any branches they created off of one's old (tainted) repository history. One merge commit could reintroduce some or all of the tainted history that one just went to the trouble of purging.
After some time has passed and you're confident that one had no unintended side effects, one can force all objects in one's local repository to be dereferenced and garbage collected with the following commands (using Git 1.8.5 or newer):
git for-each-ref --format="delete %(refname)" refs/original | git update-ref --stdin
git reflog expire --expire=now --all
git gc --prune=now
Alternative
If the file was added with the most recent commit, and one has not pushed to GitHub.com, one can delete the file and amend the commit:
Open GitBash and access the repository.
cd YOUR-REPOSITORY.l
To remove the file, enter git rm --cached:
git rm --cached GIANT_FILE
# Stage our giant file for removal, but leave it on disk
Commit this change using --amend -CHEAD:
git commit --amend -CHEAD
# Amend the previous commit with your change
# Simply making a new commit won't work, as you need
# to remove the file from the unpushed history as well
Push one's commits to GitHub.com:
git push
# Push our rewritten, smaller commit
For the Future
In order to prevent sensitive data to be exposed, other good practices include:
Use a visual program to commit the changes. There are various alternatives (such as GitHub Desktop, GitKraken, gitk, ...) and it could be easier to track the changes.
Avoid the catch-all commands git add . and git commit -a. Instead, use git add filename and git rm filename to individually stage files.
Use git add --interactive to individually review and stage changes within each file.
Use git diff --cached to review the changes that one has staged for commit. This is the exact diff that git commit will produce as long as one doesn't use the -a flag.
Generate Secret Keys in secure hardware (HSM boxes, hardware keys - like Yubikey / Solokey), that never leaves it.
Train the team on x508.
Notes:
When one force pushes, it rewrites the repository history, which removes sensitive data from the commit history. That may overwrite commits that other people have based their work on.
For this answer one used content from some GitHub posts:
Removing sensitive data from a repository
About large files on GitHub
I am working on the same project with another person, and we sync our work using Git. Whenever we do a git push / git pull the paths to our external libraries are updated with paths that are valid only for the other person's machine. The paths are defined here:
I have nothing in my .gitignore file. How can I fix this issue?
You have committed some files to your Git repo that are designed to be user-specific, and should not have been committed.
Add a .gitignore file containing at least the following:
.metadata
.classpath
Or better, import one from e.g. gitignore.io.
To remove the files you have already committed to the repo:
git rm --cached -r .metadata
git rm --cached MyProject/.classpath
and commit the changes (including your .gitignore).
The git rm commands will remove the files from the repo, but not from your working directory, so Eclipse can still find them. However, the files will be deleted from the working directory of anyone else who pulls this commit. To work around this, after the other devs have pulled your changes, you can have them do e.g.:
git checkout HEAD^ -- MyProject/.classpath
git checkout HEAD^ -- .metadata
# Unstage the files, if necessary.
git reset HEAD -- MyProject/.classpath
git reset HEAD -- .metadata
After all of this, you should be able to modify those paths per-user, and the changes will not be tracked by Git.
Group the Selenium jars into a User Library that you can reference from the .classpath file, but define differently on each machine. It adds a layer of indirection that you seem to need. http://help.eclipse.org/neon/topic/org.eclipse.jdt.doc.user/reference/preferences/java/buildpath/ref-preferences-user-libraries.htm?cp=1_4_2_0_1_1
I have a working repository setup at github.com
I want to push an entire directory to the server (not the sub-directories). How can I do this with out selecting each file individually?
I am working with in a single folder...when I am complete I'm not sure which files I've modified...the directory is relatively small so I just want to simply commit and push everything in the quickest way possible.
How do I do this?
How do I commit and push all files in a directory?
git commit -am "Commit message" will add all the files that have changed to the index, and then commit them. It won't do anything with files that are not currently being tracked.
Follow it up with git push <githubRepo> and it will push all those changes.
the fast way is to make an alias for:
git add -A && git commit
The -A will add any modifications including new files added. The -a on commit will NOT include new files.