Hey i am runing the following piece of code:
import nipype.interfaces.spm as spm
realign = spm.Realign()
And getting the following error:
raise IOError("This docstring was not generated by Nipype!\n") from e
OSError: This docstring was not generated by Nipype!
After debugging:
My code:
spm.Realign()
When this runs it uses matlab to run the follwing (base.py lines 217):
mlab.inputs.script = """
if isempty(which('spm')),
throw(MException('SPMCheck:NotFound','SPM not in matlab path'));
end;
spm_path = spm('dir');
[name, version] = spm('ver');
fprintf(1, 'NIPYPE path:%s|name:%s|release:%s', spm_path, name, version);
exit;
"""
try:
out = mlab.run()
I run it in Matlab and got :
>> isempty(which('spm'))
ans =
logical
0
>> [name, version] = spm('ver');
fprintf(1, 'NIPYPE path:%s|name:%s|release:%s', spm_path, name, version);
NIPYPE path:C:\Program Files\MATLAB\R2022b\toolbox\spm12\spm12|name:SPM12|release:7771
so as you can see I have result from this script, but when checking the "out" variable here (line 239):
out = sd._strip_header(out.runtime.stdout)
Stdout is "" empty string
So I think the problem is Somehow related to the answer of the script from Matlab, how to fix it ??
Thanks!
Anybody tried to use numba in google collaboratory? I just can not figure out how to set it up in this environment.
At the moment, I'm stuck with the error library nvvm not found.
Copy this code into cell. It works for me.
!apt-get install nvidia-cuda-toolkit
!pip3 install numba
import os
os.environ['NUMBAPRO_LIBDEVICE'] = "/usr/lib/nvidia-cuda-toolkit/libdevice"
os.environ['NUMBAPRO_NVVM'] = "/usr/lib/x86_64-linux-gnu/libnvvm.so"
from numba import cuda
import numpy as np
import time
#cuda.jit
def hello(data):
data[cuda.blockIdx.x, cuda.threadIdx.x] = cuda.blockIdx.x
numBlocks = 5
threadsPerBlock = 10
data = np.ones((numBlocks, threadsPerBlock), dtype=np.uint8)
hello[numBlocks, threadsPerBlock](data)
print(data)
I didn't have to install the packages #Algis suggested, but the paths to the drivers were different. So I had to do the following.
First determine the correct paths for the drivers
!find / -iname 'libdevice'
!find / -iname 'libnvvm.so'
# Output:
# /usr/local/cuda-9.2/nvvm/lib64/libnvvm.so
# /usr/local/cuda-9.2/nvvm/libdevice
Then set the paths as #Algis described
import os
os.environ['NUMBAPRO_LIBDEVICE'] = "/usr/local/cuda-9.2/nvvm/libdevice"
os.environ['NUMBAPRO_NVVM'] = "/usr/local/cuda-9.2/nvvm/lib64/libnvvm.so"
You can do #Stan's work in one simple sweep if you have this block at the beginning of your colab notebook (this also automatically updates as CUDA gets updated)
import os
dev_lib_path = !find / -iname 'libdevice'
nvvm_lib_path = !find / -iname 'libnvvm.so'
assert len(dev_lib_path)>0, "Device Lib Missing"
assert len(nvvm_lib_path)>0, "NVVM Missing"
os.environ['NUMBAPRO_LIBDEVICE'] = dev_lib_path[0]
os.environ['NUMBAPRO_NVVM'] = nvvm_lib_path[0]
I have set of .msg files stored in E:/ drive that I have to read and extract some information from it. For that i am using the below code in Python 3.6
from email.parser import Parser
p = Parser()
headers = p.parse(open('E:/Ratan/msg_files/Test1.msg', encoding='Latin-1'))
print('To: %s' % headers['To'])
print('From: %s' % headers['From'])
print('Subject: %s' % headers['subject'])
In the output I am getting as below.
To: None
From: None
Subject: None
I am not getting the actual values in To, FROM and subject fields.
Any thoughts why it is not printing the actual values?
Please download my sample msg file from this link:
drive.google.com/file/d/1pwWWG3BgsMKwRr0WmP8GqzG3WX4GmEy6/view
Here is a demonstration of how to use some of python's standard email libraries.
You didn't show us your input file in the question, and the g-drive URL is a deadlink.
The code below looks just like yours and works fine, so I don't know what is odd about your environment, modulo some Windows 'rb' binary open nonsense, CRLFs, or the Latin1 encoding.
I threw in .upper() but it does nothing beyond showing that the API is case insensitive.
#! /usr/bin/env python3
from email.parser import Parser
from pathlib import Path
import mailbox
def extract_messages(maildir, mbox_file, k=2, verbose=False):
for n, message in enumerate(mailbox.mbox(mbox_file)):
with open(maildir / f'{n}.txt', 'w') as fout:
fout.write(str(message))
hdrs = 'From Date Subject In-Reply-To References Message-ID'.split()
p = Parser()
for i in range(min(k, n)):
with open(maildir / f'{i}.txt') as fin:
msg = p.parse(fin)
print([len(msg[hdr.upper()] or '')
for hdr in hdrs])
for k, v in msg.items():
print(k, v)
print('')
if verbose:
print(msg.get_payload())
if __name__ == '__main__':
# from https://mail.python.org/pipermail/python-dev/
maildir = Path('/tmp/py-dev/')
extract_messages(maildir, maildir / '2018-January.txt')
I am trying to download from http and save in local folder.at first it works but now show this problem
"Error downloading URL. Your network connection may be down or your proxy settings improperly configured."
I do not know about Java.
Anybody can explain me clearly.
Here's my code:
URL = 'http://e4ftl01.cr.usgs.gov/MOLT/MOD11A1.005/2013.02.29/';
% Local path on your machine
localPath = 'E:\DATA\MOD11A1';
% Read html contents and parse file names with ending *.hdf
urlContents = urlread(URL);
ret = regexp(urlContents, '"\S+\.hdf\.xml"', 'match');
ret = regexp(urlContents, '"\S+\.hdf"', 'match');
% Loop over all files and download them
for k=1:length(ret)
filename = ret{k}(2:end-1);
if isequal(filename(19),'2')==1 && (isequal(filename(20),'1')==1 || isequal(filename(20),'2')==1 || isequal(filename(20),'3')==1) && isequal(filename(22),'0')==1 && (isequal(filename(23),'5')==1 || isequal(filename(23),'6')==1)
filepathOnline = strcat(URL, filename);
filepathLocal = fullfile(localPath, filename);
urlwrite(filepathOnline, filepathLocal);
end
end
The February 2013 has 28 days, there is no 2013.2.29.
It appears that there is an error in the URL you define in the first line. Please doublecheck the correctness, if it is indeed correct, you should probably contact the administrator of the server that the site is on.
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Here is a scenario:
I write an iPhone app using NSLocalizedString incase I decide to release it in different countries.
I decide to release the App over in France.
The translator takes my Localized.strings and does a great job translating
I update the app, and need some more translating.
I'm using genstrings and it overwrites the good work the translator did, is there a easy way for me to manage my translations over App versions?
Check out this project on GitHub, which provides a python scripts which makes genstrings a little bit smarter.
Since I don't like link-only answers (links may die), I'll also drop here the python script (all credits go to the author of the linked project)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Localize.py - Incremental localization on XCode projects
# João Moreno 2009
# http://joaomoreno.com/
# Modified by Steve Streeting 2010 http://www.stevestreeting.com
# Changes
# - Use .strings files encoded as UTF-8
# This is useful because Mercurial and Git treat UTF-16 as binary and can't
# diff/merge them. For use on iPhone you can run an iconv script during build to
# convert back to UTF-16 (Mac OS X will happily use UTF-8 .strings files).
# - Clean up .old and .new files once we're done
# Modified by Pierre Dulac 2012 http://friendcashapp.com
# Changes
# - use logging instead of print
# Adds
# - MIT Licence
# - the first parameter in the command line to specify the path of *.lproj directories
# - an optional paramter to control the debug level (set to info by default)
# Fixes
# - do not convert a file if it is already in utf-8
# - allow multiline translations generated by genstrings by modifing the re_translation regex
# -
# MIT Licence
#
# Copyright (C) 2012 Pierre Dulac
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and
# associated documentation files (the "Software"), to deal in the Software without restriction,
# including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,
# and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so,
# subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all copies or substantial
# portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT
# LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
# IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
# SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
from sys import argv
from codecs import open
from re import compile
from copy import copy
import os
import shutil
import optparse
import logging
logging.getLogger().level = logging.INFO
__version__ = "0.1"
__license__ = "MIT"
USAGE = "%prog [options] <url>"
VERSION = "%prog v" + __version__
re_translation = compile(r'^"((?:[^"]|\\")+)" = "((?:[^"]|\\")+)";(?:\n)?$')
re_comment_single = compile(r'^/\*.*\*/$')
re_comment_start = compile(r'^/\*.*$')
re_comment_end = compile(r'^.*\*/$')
class LocalizedString():
def __init__(self, comments, translation):
self.comments, self.translation = comments, translation
self.key, self.value = re_translation.match(self.translation).groups()
def __unicode__(self):
return u'%s%s\n' % (u''.join(self.comments), self.translation)
class LocalizedFile():
def __init__(self, fname=None, auto_read=False):
self.fname = fname
self.reset()
if auto_read:
self.read_from_file(fname)
def reset(self):
self.strings = []
self.strings_d = {}
def read_from_file(self, fname=None):
self.reset()
fname = self.fname if fname == None else fname
try:
#f = open(fname, encoding='utf_8', mode='r')
f = open(fname, encoding='utf_8', mode='r')
except:
print 'File %s does not exist.' % fname
exit(-1)
try:
line = f.readline()
logging.debug(line)
except:
logging.error("Can't read line for file: %s" % fname)
raise
i = 1
while line:
comments = [line]
if not re_comment_single.match(line):
while line and not re_comment_end.match(line):
line = f.readline()
comments.append(line)
line = f.readline()
i += 1
# handle multi lines
while len(line) > 1 and line[-2] != u';':
line += f.readline()
i += 1
logging.debug("%d %s" % (i, line.rstrip('\n')))
if line and re_translation.match(line):
translation = line
else:
logging.error("Line %d of file '%s' raising the exception: %s" % (i, self.fname, line))
raise Exception('invalid file')
line = f.readline()
i += 1
while line and line == u'\n':
line = f.readline()
i += 1
string = LocalizedString(comments, translation)
self.strings.append(string)
self.strings_d[string.key] = string
f.close()
def save_to_file(self, fname=None):
fname = self.fname if fname == None else fname
try:
f = open(fname, encoding='utf_8', mode='w')
except:
print 'Couldn\'t open file %s.' % fname
exit(-1)
# sort by key
self.strings.sort(key=lambda item: item.key)
for string in self.strings:
f.write(string.__unicode__())
f.close()
def merge_with(self, new):
merged = LocalizedFile()
for string in new.strings:
if self.strings_d.has_key(string.key):
new_string = copy(self.strings_d[string.key])
new_string.comments = string.comments
string = new_string
merged.strings.append(string)
merged.strings_d[string.key] = string
return merged
def update_with(self, new):
for string in new.strings:
if not self.strings_d.has_key(string.key):
self.strings.append(string)
self.strings_d[string.key] = string
def merge(merged_fname, old_fname, new_fname):
try:
old = LocalizedFile(old_fname, auto_read=True)
new = LocalizedFile(new_fname, auto_read=True)
merged = old.merge_with(new)
merged.save_to_file(merged_fname)
except Exception, inst:
logging.error('Error: input files have invalid format.')
raise
STRINGS_FILE = 'Localizable.strings'
def localize(path, excluded_paths):
languages = [os.path.join(path,name) for name in os.listdir(path) if name.endswith('.lproj') and os.path.isdir(os.path.join(path,name))]
print "languages found", languages
for language in languages:
original = merged = language + os.path.sep + STRINGS_FILE
old = original + '.old'
new = original + '.new'
if os.path.isfile(original):
try:
open(original, encoding='utf_8', mode='r').read()
os.rename(original, old)
except:
os.system('iconv -f UTF-16 -t UTF-8 "%s" > "%s"' % (original, old))
# gen
os.system('find %s -name \*.m -not -path "%s" | xargs genstrings -q -o "%s"' % (path, excluded_paths, language))
try:
open(original, encoding='utf_8', mode='r').read()
shutil.copy(original, new)
except:
os.system('iconv -f UTF-16 -t UTF-8 "%s" > "%s"' % (original, new))
# merge
merge(merged, old, new)
logging.info("Job done for language: %s" % language)
else:
os.system('genstrings -q -o "%s" `find %s -name "*.m" -not -path "%s"`' % (language, path, excluded_paths))
os.rename(original, old)
try:
open(old, encoding='utf_8', mode='r').read()
except:
os.system('iconv -f UTF-16 -t UTF-8 "%s" > "%s"' % (old, original))
if os.path.isfile(old):
os.remove(old)
if os.path.isfile(new):
os.remove(new)
def parse_options():
"""parse_options() -> opts, args
Parse any command-line options given returning both
the parsed options and arguments.
"""
parser = optparse.OptionParser(usage=USAGE, version=VERSION)
parser.add_option("-d", "--debug",
action="store_true", default=False, dest="debug",
help="Set to DEBUG the logging level (default to INFO)")
parser.add_option("-p", "--path",
action="store", type="str", default=os.getcwd(), dest="path",
help="Path (relative or absolute) to use for searching for *.lproj directories")
parser.add_option("-e", "--exclude",
action="store", type="str", default=None, dest="excluded_paths",
help="Regex for paths to exclude ex. ``./Folder1/*``")
opts, args = parser.parse_args()
return opts, args
if __name__ == '__main__':
opts, args = parse_options()
if opts.debug:
logging.getLogger().level = logging.DEBUG
if opts.path:
opts.path = os.path.realpath(opts.path)
if opts.excluded_paths:
opts.excluded_paths = os.path.realpath(opts.excluded_paths)
logging.info("Running the script on path %s" % opts.path)
localize(opts.path, opts.excluded_paths)
I use:
http://www.loc-suite.com
To only translate the new parts
I was having a similar issue. I changed a lot of keys for my NSLocalizedString-macros and was frightened that I'd ship the App with missing translations (didn't want to run through the whole App manually and check if everything's there either...).
I tried out the github project that Gabriella Petronella posted but I wasn't really that happy with it, so I wrote my own python module to accomplish what I wanted to do.
(I'm not gonna post the code here, since it's a whole module and not only one script :D)
Here is the couple of options you can chose to go with:
You can use some hand-written solution like the script mentioned above which will not completely rewrite the old files while adding a recently translated strings to them.
You can also create an additional strings.h file which will contain all the strings you do have so you will not need to rewrite them all the time, just in one place. So genstrings is not necessary anymore. However there is a con of using this: the string.h file will be unstructured which is probably not convenient for the big projects.
Thanks to Best practice using NSLocalizedString
// In strings.h
#define YOUR_STRING_KEY NSLocalizedString(#"Cancel", nil)
// Somewhere else in you code
NSLog(#"%#", YOUR_STRING_KEY);
I actually started using a tool called PhraseApp https://phraseapp.com/projects
It's worth looking into if you have to localise an app!