I built a fat jar and I am trying to run it with spark-submit on an EMR or locally. here is the command:
spark-submit \
--deploy-mode client \
--class com.stash.data.omni.source.Runner myJar.jar \
<arguments>
I keep getting an error related to akka configurations:
Exception in thread "main" com.typesafe.config.ConfigException$Missing: No configuration setting found for key 'akka.version'
It seems like the jar cannot find the reference.confs for akka at all. Has anyone dealt with this? I am able to run it without spark-submit on my local machine.
I think the issue is bundling into a jar with all it's dependencies, which causes problems with Akka, as described in the documentation:
Akka’s configuration approach relies heavily on the notion of every
module/jar having its own reference.conf file. All of these will be
discovered by the configuration and loaded. Unfortunately this also
means that if you put/merge multiple jars into the same jar, you need
to merge all the reference.conf files as well: otherwise all defaults
will be lost.
You can follow this documentation to package your application and process to merge the reference.conf resources while bundling.It talks about packaging using sbt, maven, and gradle.
Let me know if it helps!!
it was my merge strategy. i had a catch all case _ => MergeStrategy.first. i changed it to case x => MergeStrategy.defaultMergeStrategy(x) and it worked.
Related
We can't figure out the following issue: we are trying to use Apache Hudi to save data to the storage. The problem is when we upload a fat jar which includes the org.json package in dependencies, the df.save() application is failing on
java.lang.NoClassDefFoundError: org/json/JSONException
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.analyzeCreateTable(SemanticAnalyzer.java:10847)
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.genResolvedParseTree(SemanticAnalyzer.java:10047)
at org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.analyzeInternal(SemanticAnalyzer.java:10128)
at org.apache.hadoop.hive.ql.parse.CalcitePlanner.analyzeInternal(CalcitePlanner.java:209)
at org.apache.hadoop.hive.ql.parse.BaseSemanticAnalyzer.analyze(BaseSemanticAnalyzer.java:227)
at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:424)
at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:308)
at org.apache.hadoop.hive.ql.Driver.compileInternal(Driver.java:1122)
at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1170)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1059)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1049)
at org.apache.hudi.hive.HoodieHiveClient.updateHiveSQLs(HoodieHiveClient.java:384)
at org.apache.hudi.hive.HoodieHiveClient.updateHiveSQLUsingHiveDriver(HoodieHiveClient.java:367)
at org.apache.hudi.hive.HoodieHiveClient.updateHiveSQL(HoodieHiveClient.java:357)
at org.apache.hudi.hive.HoodieHiveClient.createTable(HoodieHiveClient.java:262)
at org.apache.hudi.hive.HiveSyncTool.syncSchema(HiveSyncTool.java:176)
at org.apache.hudi.hive.HiveSyncTool.syncHoodieTable(HiveSyncTool.java:130)
at org.apache.hudi.hive.HiveSyncTool.syncHoodieTable(HiveSyncTool.java:94)
at org.apache.hudi.HoodieSparkSqlWriter$.org$apache$hudi$HoodieSparkSqlWriter$$syncHive(HoodieSparkSqlWriter.scala:321)
at org.apache.hudi.HoodieSparkSqlWriter$$anonfun$metaSync$2.apply(HoodieSparkSqlWriter.scala:363)
at org.apache.hudi.HoodieSparkSqlWriter$$anonfun$metaSync$2.apply(HoodieSparkSqlWriter.scala:359)
Even if I go to the cluster libraries and explicitly add this dependency it still fails on save. On the other hand, when I just create new JSONException("hello") in my notebook everything seem to work fine. What could cause this behaviour? Thanks
This is probably because the jar is not making it's way to the executor nodes, try addJar (https://spark.apache.org/docs/latest/api/java/org/apache/spark/SparkContext.html#addJar-java.lang.String-)
What version of Hudi are you using? There is a problem with JSON in version 0.6.0 and there is an opened issue. I suggest you to use version 0.5.2 by now.
Turns out that the problem was with different classpath between metastore service and spark process, because they run in separated JVM's. The problem was fixed in an init script that downloads the jar to the classpath folder.
I have used maven project in Scala. I have used all dependencies in pom.
Still I am getting ClassNotFoundException when I run spark-submit command.
clean compile assembly:single is the Maven goal which I used.
Following is the spark submit command I have used.
spark-submit --class com.SimpleScalaApp.SimpleApp --master local /location/file.jar
Unfortunately there is no useful comment on the question in my opinion. The ClassNotFoundException mostly is thrown when version of your dependencies are not match together.
First of all it's better to check if all your dependencies are matched by checking those dependencies' pom files and consequently their usage order in the main project pom file.
A short description about the best practice of running the program on spark cluster is using shaded or assembly build form.
Please note that I am better dataminer than programmer.
I am trying to run examples from book "Advanced analytics with Spark" from author Sandy Ryza (these code examples can be downloaded from "https://github.com/sryza/aas"),
and I run into following problem.
When I open this project in Intelij Idea and try to run it, I get error "Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/spark/rdd/RDD"
Does anyone know how to solve this issue ?
Does this mean i am using wrong version of spark ?
First when I tried to run this code, I got error "Exception in thread "main" java.lang.NoClassDefFoundError: scala/product", but I solved it by setting scala-lib to compile in maven.
I use Maven 3.3.9, Java 1.7.0_79 and scala 2.11.7 , spark 1.6.1. I tried both Intelij Idea 14 and 15 different versions of java (1.7), scala (2.10) and spark, but to no success.
I am also using windows 7.
My SPARK_HOME and Path variables are set, and i can execute spark-shell from command line.
The examples in this book will show a --master argument to sparkshell, but you will need to specify arguments as appropriate for your environment. If you don’t have Hadoop installed you need to start the spark-shell locally. To execute the sample you can simply pass paths to local file reference (file:///), rather than a HDFS reference (hdfs://)
The author suggest an hybrid development approach:
Keep the frontier of development in the REPL, and, as pieces of code
harden, move them over into a compiled library.
Hence the samples code are considered as compiled libraries rather than standalone application. You can make the compiled JAR available to spark-shell by passing it to the --jars property, while maven is used for compiling and managing dependencies.
In the book the author describes how the simplesparkproject can be executed:
use maven to compile and package the project
cd simplesparkproject/
mvn package
start the spark-shell with the jar dependencies
spark-shell --master local[2] --driver-memory 2g --jars ../simplesparkproject-0.0.1.jar ../README.md
Then you can access you object within the spark-shell as follows:
val myApp = com.cloudera.datascience.MyApp
However if you want to execute the sample code as Standalone application and execute it within idea you need to modify the pom.xml.
Some of dependencies are required for compilation, but are available in an spark runtime environment. Therefore these dependencies are marked with scope provided in the pom.xml.
<!--<scope>provided</scope>-->
you can remake the provided scope, than you will be able to run the samples within idea. But you can not provide this jar as dependency for the spark shell anymore.
Note: using maven 3.0.5 and Java 7+. I had problems with maven 3.3.X version with the plugin versions.
I have a Spark Job that is using some external libraries to work. When I run the job locally through the main method from IntelliJ the job runs without any issues. However, when I assembly my job into a jarfile (I create an UberJAR using sbt) and I try to run it on EMR, it throws a ClassNotFoundException.
I have checked that the class is indeed inside the jarfile so it should be available for the job to run. I have also tried the spark-submit options spark.driver.extraClassPath, spark.driver.extraLibraryPath, spark.executor.extraClassPath and spark.executor.extraLibraryPath as well as spark.driver.userClassPathFirst and spark.executor.userClassPathFirst. Also, I tried doing in the code sparkContext.addJar("/mnt/jars/myJar"). None of them worked for me.
Also, when running on EMR I can read the log that says that the JAR was added (not sure if it is loaded on the classpath, but it should because other classes are being loaded properly):
15/11/02 04:10:26 INFO SparkContext: Added JAR file:///mnt/my-app-1.0-SNAPSHOT.jar at http://172.31.42.244:44471/jars/my-app-1.0-SNAPSHOT.jar with timestamp 1446437426661
I am running out of ideas about what else to try. I have been researching and I see few tickets on the Spark JIRA board but nothing similar to my issue.
I am running on EMR release-label 4.1.0 (Spark 1.5.0), Java 7, sbt 0.13.7 and Scala 2.10.5.
I think when launching your job on EMR you need to provide the s3 location for your jar dependencies a la the manual e.g. -u s3://sparksupport/libs. These jars will be added to the classpath when running spark.
It turned out to be a problem with SerializationUtils from Apache Commons Lang. There is an open issue where the class will throw a ClassNotFoundException even if the class is in the classpath in a multiple-classloader environment: https://issues.apache.org/jira/browse/LANG-1049
We moved away from the library and our Spark job is working fine now. The issue was not related with Spark finally.
I would like to run a Samza (using RocksDB KV store) application from SBT. When I do ./sbt "run " I receive the following error
java.lang.ExceptionInInitializerError
(snip)
Caused by: java.lang.RuntimeException: librocksdbjni-linux64.so was not found inside JAR.
(snip)
I assume that since I run with ./run, sbt runs the classes directly, without assembling a JAR.
The dependencies are set correctly, and I've got the librocksdbjni-linux64.so inside RocksDB JAR.
Do I have to create an assembly before running?
How can I test in this case without creating an assembly?
Well, librocksdbjni-linux64.so sounds like a native library, and those usually require a little extra fiddling with things, even if they are inside the path, in order to be recognized and added. Check this question.