prometheus alert manager config not showing in UI - kubernetes

I am add prometheus(prom/prometheus:v2.16.0) alertmanager,now I add rule config in prometheus-configmap.xml:
apiVersion: v1
kind: ConfigMap
metadata:
name: prometheus-config
namespace: kube-system
labels:
kubernetes.io/cluster-service: "true"
addonmanager.kubernetes.io/mode: EnsureExists
data:
prometheus.yml: |
rule_files:
- /etc/prometheus/rules.yml
alerting:
alertmanagers:
- static_configs:
- targets: ["alertmanager:9093"]
scrape_configs:
- job_name: traefik
metrics_path: /metrics
static_configs:
- targets:
- traefik.kube-system.svc.cluster.local:8080
rules.yml: |
groups:
- name: test-rule
rules:
- alert: NodeFilesystemUsage
expr: (node_filesystem_size{device="rootfs"} - node_filesystem_free{device="rootfs"}) / node_filesystem_size{device="rootfs"} * 100 > 80
for: 2m
labels:
team: node
annotations:
summary: "{{$labels.instance}}: High Filesystem usage detected"
description: "{{$labels.instance}}: Filesystem usage is above 80% (current value is: {{ $value }}"
and I refresh the config:
kubectl apply -f prometheus-configmap.xm
kubectl exec -it soa-room-service-686959b94d-9g5q2 /bin/bash
curl -X POST http://prometheus.kube-system.svc.cluster.local:9090/-/reload
the prometheus dashboard config shows like this:
global:
scrape_interval: 1m
scrape_timeout: 10s
evaluation_interval: 1m
alerting:
alertmanagers:
- static_configs:
- targets:
- alertmanager:9093
scheme: http
timeout: 10s
api_version: v1
rule_files:
- /etc/prometheus/rules.yml
scrape_configs:
- job_name: traefik
honor_timestamps: true
scrape_interval: 1m
scrape_timeout: 10s
metrics_path: /metrics
scheme: http
static_configs:
- targets:
- traefik.kube-system.svc.cluster.local:8080
the alert config rules not valid,what should I do to make it works?
This is how to install prometheus :
apiVersion: apps/v1
kind: StatefulSet
metadata:
name: prometheus
namespace: kube-system
labels:
k8s-app: prometheus
kubernetes.io/cluster-service: "true"
addonmanager.kubernetes.io/mode: Reconcile
version: v2.2.1
spec:
serviceName: "prometheus"
replicas: 1
podManagementPolicy: "Parallel"
updateStrategy:
type: "RollingUpdate"
selector:
matchLabels:
k8s-app: prometheus
template:
metadata:
labels:
k8s-app: prometheus
annotations:
scheduler.alpha.kubernetes.io/critical-pod: ''
spec:
priorityClassName: system-cluster-critical
serviceAccountName: prometheus
initContainers:
- name: "init-chown-data"
image: "busybox:latest"
imagePullPolicy: "IfNotPresent"
command: ["chown", "-R", "65534:65534", "/data"]
volumeMounts:
- name: prometheus-data
mountPath: /data
subPath: ""
containers:
- name: prometheus-server-configmap-reload
image: "jimmidyson/configmap-reload:v0.1"
imagePullPolicy: "IfNotPresent"
args:
- --volume-dir=/etc/config
- --webhook-url=http://localhost:9090/-/reload
volumeMounts:
- name: config-volume
mountPath: /etc/config
readOnly: true
resources:
limits:
cpu: 10m
memory: 10Mi
requests:
cpu: 10m
memory: 10Mi
- name: prometheus-server
image: "prom/prometheus:v2.16.0"
imagePullPolicy: "IfNotPresent"
args:
- --config.file=/etc/config/prometheus.yml
- --storage.tsdb.path=/data
- --web.console.libraries=/etc/prometheus/console_libraries
- --web.console.templates=/etc/prometheus/consoles
- --web.enable-lifecycle
ports:
- containerPort: 9090
readinessProbe:
httpGet:
path: /-/ready
port: 9090
initialDelaySeconds: 30
timeoutSeconds: 30
livenessProbe:
httpGet:
path: /-/healthy
port: 9090
initialDelaySeconds: 30
timeoutSeconds: 30
# based on 10 running nodes with 30 pods each
resources:
limits:
cpu: 200m
memory: 1000Mi
requests:
cpu: 200m
memory: 1000Mi
volumeMounts:
- name: config-volume
mountPath: /etc/config
- name: prometheus-data
mountPath: /data
subPath: ""
terminationGracePeriodSeconds: 300
volumes:
- name: config-volume
configMap:
name: prometheus-config
volumeClaimTemplates:
- metadata:
name: prometheus-data
spec:
storageClassName: standard
accessModes:
- ReadWriteOnce
resources:
requests:
storage: "16Gi"
This is my pod describe output:
kubectl describe pods prometheus-0 -n kube-system
Name: prometheus-0
Namespace: kube-system
Priority: 2000000000
Priority Class Name: system-cluster-critical
Node: azshara-k8s01/172.19.104.231
Start Time: Wed, 11 Mar 2020 19:28:28 +0800
Labels: controller-revision-hash=prometheus-cf5dc9d8b
k8s-app=prometheus
statefulset.kubernetes.io/pod-name=prometheus-0
Annotations: scheduler.alpha.kubernetes.io/critical-pod:
Status: Running
IP: 172.30.224.4
IPs: <none>
Controlled By: StatefulSet/prometheus
Init Containers:
init-chown-data:
Container ID: docker://a3adc4bce1dccbdd6adb27ca38c54b7ae670d605b6273d53e85f601649357709
Image: busybox:latest
Image ID: docker-pullable://busybox#sha256:b26cd013274a657b86e706210ddd5cc1f82f50155791199d29b9e86e935ce135
Port: <none>
Host Port: <none>
Command:
chown
-R
65534:65534
/data
State: Terminated
Reason: Completed
Exit Code: 0
Started: Wed, 11 Mar 2020 19:28:29 +0800
Finished: Wed, 11 Mar 2020 19:28:29 +0800
Ready: True
Restart Count: 0
Environment: <none>
Mounts:
/data from prometheus-data (rw)
/var/run/secrets/kubernetes.io/serviceaccount from prometheus-token-k8d22 (ro)
Containers:
prometheus-server-configmap-reload:
Container ID: docker://9d31d10c9246ddfa94d84d59737edd03f06e008960657b000461ae886d030516
Image: jimmidyson/configmap-reload:v0.1
Image ID: docker-pullable://jimmidyson/configmap-reload#sha256:2d40c2eaa6f435b2511d0cfc5f6c0a681eeb2eaa455a5d5ac25f88ce5139986e
Port: <none>
Host Port: <none>
Args:
--volume-dir=/etc/config
--webhook-url=http://localhost:9090/-/reload
State: Running
Started: Wed, 11 Mar 2020 19:28:30 +0800
Ready: True
Restart Count: 0
Limits:
cpu: 10m
memory: 10Mi
Requests:
cpu: 10m
memory: 10Mi
Environment: <none>
Mounts:
/etc/config from config-volume (ro)
/var/run/secrets/kubernetes.io/serviceaccount from prometheus-token-k8d22 (ro)
prometheus-server:
Container ID: docker://65d2870debb187a20a102786cac3725745e5bc0d60f3e04cb38c2beea6f5c128
Image: prom/prometheus:v2.16.0
Image ID: docker-pullable://prom/prometheus#sha256:e4ca62c0d62f3e886e684806dfe9d4e0cda60d54986898173c1083856cfda0f4
Port: 9090/TCP
Host Port: 0/TCP
Args:
--config.file=/etc/config/prometheus.yml
--storage.tsdb.path=/data
--web.console.libraries=/etc/prometheus/console_libraries
--web.console.templates=/etc/prometheus/consoles
--web.enable-lifecycle
State: Running
Started: Wed, 11 Mar 2020 19:28:30 +0800
Ready: True
Restart Count: 0
Limits:
cpu: 200m
memory: 1000Mi
Requests:
cpu: 200m
memory: 1000Mi
Liveness: http-get http://:9090/-/healthy delay=30s timeout=30s period=10s #success=1 #failure=3
Readiness: http-get http://:9090/-/ready delay=30s timeout=30s period=10s #success=1 #failure=3
Environment: <none>
Mounts:
/data from prometheus-data (rw)
/etc/config from config-volume (rw)
/var/run/secrets/kubernetes.io/serviceaccount from prometheus-token-k8d22 (ro)
Conditions:
Type Status
Initialized True
Ready True
ContainersReady True
PodScheduled True
Volumes:
prometheus-data:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: prometheus-data-prometheus-0
ReadOnly: false
config-volume:
Type: ConfigMap (a volume populated by a ConfigMap)
Name: prometheus-config
Optional: false
prometheus-token-k8d22:
Type: Secret (a volume populated by a Secret)
SecretName: prometheus-token-k8d22
Optional: false
QoS Class: Guaranteed
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute for 360s
node.kubernetes.io/unreachable:NoExecute for 360s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 50m default-scheduler Successfully assigned kube-system/prometheus-0 to azshara-k8s01
Normal Pulled 50m kubelet, azshara-k8s01 Container image "busybox:latest" already present on machine
Normal Created 50m kubelet, azshara-k8s01 Created container init-chown-data
Normal Started 50m kubelet, azshara-k8s01 Started container init-chown-data
Normal Pulled 50m kubelet, azshara-k8s01 Container image "jimmidyson/configmap-reload:v0.1" already present on machine
Normal Created 50m kubelet, azshara-k8s01 Created container prometheus-server-configmap-reload
Normal Started 50m kubelet, azshara-k8s01 Started container prometheus-server-configmap-reload
Normal Pulled 50m kubelet, azshara-k8s01 Container image "prom/prometheus:v2.16.0" already present on machine
Normal Created 50m kubelet, azshara-k8s01 Created container prometheus-server
Normal Started 50m kubelet, azshara-k8s01 Started container prometheus-server

You have some possible way of checking your configuration.
https://prometheus.io/docs/alerting/configuration/ (check documentation and try to run alertmanager in console on your computer to see log messages during startup)
https://prometheus.io/webtools/alerting/routing-tree-editor/ (visualization for alerting routes, can be handy. parsing error can be seen by wrong visualization)
https://github.com/prometheus/alertmanager/issues/333 (tool for checking config directly)
I am not familiar with your kubernates set-up, so I am not able to verify it for you. I hope my links will help

if it is deployed using Prometheus-operator, then you need to create an prometheusrule object. once you create an prometheusrule object it will automatically pick the new alerts rule. below is the sample:
apiVersion: monitoring.coreos.com/v1
kind: PrometheusRule
metadata:
labels:
prometheus: service-prometheus
role: alert-rules
name: prometheus-service-rules
namespace: monitoring
spec:
groups:
- name: general.rules
rules:
- alert: TargetDown-serviceprom
annotations:
description: '{{ $value }}% of {{ $labels.job }} targets are down.'
summary: Targets are down
expr: 100 * (count(up == 0) BY (job) / count(up) BY (job)) > 10
for: 10m
labels:
severity: warning
- alert: DeadMansSwitch-serviceprom
annotations:
description: This is a DeadMansSwitch meant to ensure that the entire Alerting
pipeline is functional.
summary: Alerting DeadMansSwitch
expr: vector(1)
labels:
severity: none

The rule.yml file in the path /etc/config,not in the /etc/prometheus,so change the rules file read path,the rules path config like this:
rule_files:
- /etc/config/rules.yml

Related

k8s readiness probes working in GKE, not in Microk8s (on MacOS)

I have a Kong deployment.
apiVersion: apps/v1
kind: Deployment
metadata:
name: local-test-kong
labels:
app: local-test-kong
spec:
replicas: 1
selector:
matchLabels:
app: local-test-kong
strategy:
rollingUpdate:
maxSurge: 25%
maxUnavailable: 0
type: RollingUpdate
template:
metadata:
labels:
app: local-test-kong
spec:
automountServiceAccountToken: false
containers:
- envFrom:
- configMapRef:
name: kong-env-vars
image: kong:2.6
imagePullPolicy: IfNotPresent
lifecycle:
preStop:
exec:
command:
- /bin/sh
- -c
- /bin/sleep 15 && kong quit
livenessProbe:
failureThreshold: 3
httpGet:
path: /status
port: status
scheme: HTTP
initialDelaySeconds: 10
periodSeconds: 10
successThreshold: 1
timeoutSeconds: 5
name: proxy
ports:
- containerPort: 8000
name: proxy
protocol: TCP
- containerPort: 8100
name: status
protocol: TCP
readinessProbe:
failureThreshold: 3
httpGet:
path: /status
port: status
scheme: HTTP
initialDelaySeconds: 10
periodSeconds: 10
successThreshold: 1
timeoutSeconds: 5
resources: # ToDo
limits:
cpu: 256m
memory: 256Mi
requests:
cpu: 256m
memory: 256Mi
terminationMessagePath: /dev/termination-log
terminationMessagePolicy: File
volumeMounts:
- mountPath: /kong_prefix/
name: kong-prefix-dir
- mountPath: /tmp
name: tmp-dir
- mountPath: /kong_dbless/
name: kong-custom-dbless-config-volume
terminationGracePeriodSeconds: 30
volumes:
- name: kong-prefix-dir
- name: tmp-dir
- configMap:
defaultMode: 0555
name: kong-declarative
name: kong-custom-dbless-config-volume
I applied this YAML in GKE. Then i ran kubectl describe on its pod.
➜ kubectl get pods
NAME READY STATUS RESTARTS AGE
local-test-kong-678598ffc6-ll9s8 1/1 Running 0 25m
➜ kubectl describe pod/local-test-kong-678598ffc6-ll9s8
Name: local-test-kong-678598ffc6-ll9s8
Namespace: local-test-kong
Priority: 0
Node: gke-paas-cluster-prd-tf9-default-pool-e7cb502a-ggxl/10.128.64.95
Start Time: Wed, 23 Nov 2022 00:12:56 +0800
Labels: app=local-test-kong
pod-template-hash=678598ffc6
Annotations: kubectl.kubernetes.io/restartedAt: 2022-11-23T00:12:56+08:00
Status: Running
IP: 10.128.96.104
IPs:
IP: 10.128.96.104
Controlled By: ReplicaSet/local-test-kong-678598ffc6
Containers:
proxy:
Container ID: containerd://1bd392488cfe33dcc62f717b3b8831349e8cf573326add846c9c843c7bf15e2a
Image: kong:2.6
Image ID: docker.io/library/kong#sha256:62eb6d17133b007cbf5831b39197c669b8700c55283270395b876d1ecfd69a70
Ports: 8000/TCP, 8100/TCP
Host Ports: 0/TCP, 0/TCP
State: Running
Started: Wed, 23 Nov 2022 00:12:58 +0800
Ready: True
Restart Count: 0
Limits:
cpu: 256m
memory: 256Mi
Requests:
cpu: 256m
memory: 256Mi
Liveness: http-get http://:status/status delay=10s timeout=5s period=10s #success=1 #failure=3
Readiness: http-get http://:status/status delay=10s timeout=5s period=10s #success=1 #failure=3
Environment Variables from:
kong-env-vars ConfigMap Optional: false
Environment: <none>
Mounts:
/kong_dbless/ from kong-custom-dbless-config-volume (rw)
/kong_prefix/ from kong-prefix-dir (rw)
/tmp from tmp-dir (rw)
Conditions:
Type Status
Initialized True
Ready True
ContainersReady True
PodScheduled True
Volumes:
kong-prefix-dir:
Type: EmptyDir (a temporary directory that shares a pod's lifetime)
Medium:
SizeLimit: <unset>
tmp-dir:
Type: EmptyDir (a temporary directory that shares a pod's lifetime)
Medium:
SizeLimit: <unset>
kong-custom-dbless-config-volume:
Type: ConfigMap (a volume populated by a ConfigMap)
Name: kong-declarative
Optional: false
QoS Class: Guaranteed
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute op=Exists for 300s
node.kubernetes.io/unreachable:NoExecute op=Exists for 300s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 25m default-scheduler Successfully assigned local-test-kong/local-test-kong-678598ffc6-ll9s8 to gke-paas-cluster-prd-tf9-default-pool-e7cb502a-ggxl
Normal Pulled 25m kubelet Container image "kong:2.6" already present on machine
Normal Created 25m kubelet Created container proxy
Normal Started 25m kubelet Started container proxy
➜
I applied the same YAML in my localhost's MicroK8S (on MacOS) and then I ran kubectl describe on its pod.
➜ kubectl get pods
NAME READY STATUS RESTARTS AGE
local-test-kong-54cfc585cb-7grj8 1/1 Running 0 86s
➜ kubectl describe pod/local-test-kong-54cfc585cb-7grj8
Name: local-test-kong-54cfc585cb-7grj8
Namespace: local-test-kong
Priority: 0
Node: microk8s-vm/192.168.64.5
Start Time: Wed, 23 Nov 2022 00:39:33 +0800
Labels: app=local-test-kong
pod-template-hash=54cfc585cb
Annotations: cni.projectcalico.org/podIP: 10.1.254.79/32
cni.projectcalico.org/podIPs: 10.1.254.79/32
kubectl.kubernetes.io/restartedAt: 2022-11-23T00:39:33+08:00
Status: Running
IP: 10.1.254.79
IPs:
IP: 10.1.254.79
Controlled By: ReplicaSet/local-test-kong-54cfc585cb
Containers:
proxy:
Container ID: containerd://d60d09ca8b77ee59c80ea060dcb651c3e346c3a5f0147b0d061790c52193d93d
Image: kong:2.6
Image ID: docker.io/library/kong#sha256:62eb6d17133b007cbf5831b39197c669b8700c55283270395b876d1ecfd69a70
Ports: 8000/TCP, 8100/TCP
Host Ports: 0/TCP, 0/TCP
State: Running
Started: Wed, 23 Nov 2022 00:39:37 +0800
Ready: True
Restart Count: 0
Limits:
cpu: 256m
memory: 256Mi
Requests:
cpu: 256m
memory: 256Mi
Liveness: http-get http://:status/status delay=10s timeout=5s period=10s #success=1 #failure=3
Readiness: http-get http://:status/status delay=10s timeout=5s period=10s #success=1 #failure=3
Environment Variables from:
kong-env-vars ConfigMap Optional: false
Environment: <none>
Mounts:
/kong_dbless/ from kong-custom-dbless-config-volume (rw)
/kong_prefix/ from kong-prefix-dir (rw)
/tmp from tmp-dir (rw)
Conditions:
Type Status
Initialized True
Ready True
ContainersReady True
PodScheduled True
Volumes:
kong-prefix-dir:
Type: EmptyDir (a temporary directory that shares a pod's lifetime)
Medium:
SizeLimit: <unset>
tmp-dir:
Type: EmptyDir (a temporary directory that shares a pod's lifetime)
Medium:
SizeLimit: <unset>
kong-custom-dbless-config-volume:
Type: ConfigMap (a volume populated by a ConfigMap)
Name: kong-declarative
Optional: false
QoS Class: Guaranteed
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute op=Exists for 300s
node.kubernetes.io/unreachable:NoExecute op=Exists for 300s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 92s default-scheduler Successfully assigned local-test-kong/local-test-kong-54cfc585cb-7grj8 to microk8s-vm
Normal Pulled 90s kubelet Container image "kong:2.6" already present on machine
Normal Created 90s kubelet Created container proxy
Normal Started 89s kubelet Started container proxy
Warning Unhealthy 68s kubelet Readiness probe failed: Get "http://10.1.254.79:8100/status": context deadline exceeded (Client.Timeout exceeded while awaiting headers)
Warning Unhealthy 68s kubelet Liveness probe failed: Get "http://10.1.254.79:8100/status": context deadline exceeded (Client.Timeout exceeded while awaiting headers)
➜
It's the exact same deployment YAML. However, the deployment created inside GKE cluster are running all fine with no complaints. But, the deployment created inside my localhost microk8s (on MacOS) is showing probe failures.
What could i be missing here while deploying to microk8s (on MacOS)?
Your readiness probes are failing on the local pod on port 8100. It looks like you have a firewall(s) rule preventing internal pod and/or pod to pod communication.
As per the docs:
You may need to configure your firewall to allow pod-to-pod and pod-to-internet communication:
sudo ufw allow in on cni0 && sudo ufw allow out on cni0
sudo ufw default allow routed

Kubernetes Pod is unable to mount volumes to GCP Filestore

I am new to Kubernetes, and as a part of tutorial I have spun up a GKE cluster and a GCP Filestore instance.
Now I am trying to mount Grafana's volume to this Filestore instance. However, it is getting timed out. I am unable to decipher where the mistake lies. I need your help in addressing the issue.
PFB the output.
C:\Users\ak>kubectl describe pod/grafana-7c666cff94-vkgh4
Name: grafana-7c666cff94-vkgh4
Namespace: bc
Priority: 0
Node: gke-bc-gke-cluster-bc-nodepool-9496e187-zsnw/10.51.0.5
Start Time: Fri, 02 Sep 2022 16:21:28 +0530
Labels: app=grafana
pod-template-hash=7c666cff94
Annotations: <none>
Status: Pending
IP:
IPs: <none>
Controlled By: ReplicaSet/grafana-7c666cff94
Containers:
grafana:
Container ID:
Image: grafana/grafana:8.4.4
Image ID:
Port: 3000/TCP
Host Port: 0/TCP
State: Waiting
Reason: ContainerCreating
Ready: False
Restart Count: 0
Requests:
cpu: 250m
memory: 750Mi
Liveness: tcp-socket :3000 delay=30s timeout=1s period=10s #success=1 #failure=3
Readiness: http-get http://:3000/robots.txt delay=10s timeout=2s period=30s #success=1 #failure=3
Environment: <none>
Mounts:
/var/lib/grafana from fileserver (rw)
/var/run/secrets/kubernetes.io/serviceaccount from kube-api-access-v7qjd (ro)
Conditions:
Type Status
Initialized True
Ready False
ContainersReady False
PodScheduled True
Volumes:
fileserver:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: fileserver-claim
ReadOnly: false
kube-api-access-v7qjd:
Type: Projected (a volume that contains injected data from multiple sources)
TokenExpirationSeconds: 3607
ConfigMapName: kube-root-ca.crt
ConfigMapOptional: <nil>
DownwardAPI: true
QoS Class: Burstable
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute op=Exists for 300s
node.kubernetes.io/unreachable:NoExecute op=Exists for 300s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 43m default-scheduler Successfully assigned bluecopa/grafana-7c666cff94-vkgh4 to gke-bc-gke-cluster-bc-nodepool-9496e187-zsnw
Warning FailedMount 4m15s (x11 over 40m) kubelet MountVolume.SetUp failed for volume "fileserver" : mount failed: exit status 1
Mounting command: /home/kubernetes/containerized_mounter/mounter
Mounting arguments: mount -t nfs 10.168.189.130:/bc_fs /var/lib/kubelet/pods/cf44b980-7461-4c0e-a32f-673588160692/volumes/kubernetes.io~nfs/fileserver
Output: Mount failed: mount failed: exit status 32
Mounting command: chroot
Mounting arguments: [/home/kubernetes/containerized_mounter/rootfs mount -t nfs xx.xx.xx.xx:/bc_fs /var/lib/kubelet/pods/cf44b980-7461-4c0e-a32f-673588160692/volumes/kubernetes.io~nfs/fileserver]
Output: mount.nfs: Connection timed out
Warning FailedMount 3m16s (x12 over 37m) kubelet Unable to attach or mount volumes: unmounted volumes=[fileserver], unattached volumes=[fileserver kube-api-access-v7qjd]: timed out waiting for the condition
Warning FailedMount 59s (x7 over 41m) kubelet Unable to attach or mount volumes: unmounted volumes=[fileserver], unattached volumes=[kube-api-access-v7qjd fileserver]: timed out waiting for the condition
PV.yaml
apiVersion: v1
kind: PersistentVolume
metadata:
name: fileserver
namespace: bluecopa
spec:
capacity:
storage: 200Gi
accessModes:
- ReadWriteMany
nfs:
path: /bc_fs
server: xx.xx.xx.xx
PVC.yaml
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
name: fileserver-claim
namespace: bluecopa
spec:
accessModes:
- ReadWriteMany
storageClassName: ""
volumeName: fileserver
resources:
requests:
storage: 100Gi
Deployment.yaml
apiVersion: apps/v1
kind: Deployment
metadata:
labels:
app: grafana
name: grafana
namespace: bluecopa
spec:
selector:
matchLabels:
app: grafana
template:
metadata:
labels:
app: grafana
spec:
securityContext:
fsGroup: 472
supplementalGroups:
- 0
containers:
- name: grafana
image: grafana/grafana:8.4.4
imagePullPolicy: IfNotPresent
ports:
- containerPort: 3000
name: http-grafana
protocol: TCP
readinessProbe:
failureThreshold: 3
httpGet:
path: /robots.txt
port: 3000
scheme: HTTP
initialDelaySeconds: 10
periodSeconds: 30
successThreshold: 1
timeoutSeconds: 2
livenessProbe:
failureThreshold: 3
initialDelaySeconds: 30
periodSeconds: 10
successThreshold: 1
tcpSocket:
port: 3000
timeoutSeconds: 1
resources:
requests:
cpu: 250m
memory: 750Mi
volumeMounts:
- mountPath: /var/lib/grafana
name: fileserver
volumes:
- name: fileserver
persistentVolumeClaim:
claimName: fileserver-claim
While using the volume mounts in pods we need to watch out for security context
Use the securitycontext as follows in deployment file
securityContext:
runAsUser: 0
Use the following security context in the deployment file
This will help you out to mount the volume without any issues.
For more information check out this documents
Doc1 &
Doc2
Here is the output of deployment pod

How can I explore Kubernetes folder?

I tried to start fabric on kubernetes.
Then I get this issue CrashLoopBackOff. After search a bit, I can see from the logs that
2019-06-05 07:30:19.216 UTC [main] main -> ERRO 001 Cannot run peer because error when setting up MSP from directory /etc/hyperledger/fabric/msp: err Could not load a valid signer certificate from directory /etc/hyperledger/fabric/msp/signcerts, err stat /etc/hyperledger/fabric/msp/signcerts: no such file or directory
How can I see if I am mounting the correct folder?
I want to access my crashed container to check if my msp folder are there.
Any help is appreciated!
edit 1: kubectl pod describe for peer1 org 1
Name: peer1-org1-7b9cf7fbd4-74b7q
Namespace: org1
Priority: 0
PriorityClassName: <none>
Node: minikube/10.0.2.15
Start Time: Wed, 05 Jun 2019 17:48:21 +0900
Labels: app=hyperledger
org=org1
peer-id=peer1
pod-template-hash=7b9cf7fbd4
role=peer
Annotations: <none>
Status: Running
IP: 172.17.0.9
Controlled By: ReplicaSet/peer1-org1-7b9cf7fbd4
Containers:
couchdb:
Container ID: docker://7b5e80103491476843d365dc234316ae55a92d66f2ea009cf9162583a76907fb
Image: hyperledger/fabric-couchdb:x86_64-1.0.0
Image ID: docker-pullable://hyperledger/fabric-couchdb#sha256:e89b0f95f6ff674fd043795090dd65a11d727ec005d925545cf0b4fc48aa221d
Port: 5984/TCP
Host Port: 0/TCP
State: Running
Started: Wed, 05 Jun 2019 17:49:49 +0900
Ready: True
Restart Count: 0
Environment: <none>
Mounts:
/var/run/secrets/kubernetes.io/serviceaccount from default-token-sjp8t (ro)
peer1-org1:
Container ID: docker://95e743dceafbd78f7e29476302ac86d7eb48f97c9a50db3d174dc6684511c97b
Image: hyperledger/fabric-peer:x86_64-1.0.0
Image ID: docker-pullable://hyperledger/fabric-peer#sha256:b7c1c2a6b356996c3dbe2b9554055cd2b63194cd7a492a83de2dbabf7f7e3c65
Ports: 7051/TCP, 7052/TCP, 7053/TCP
Host Ports: 0/TCP, 0/TCP, 0/TCP
Command:
peer
Args:
node
start
State: Waiting
Reason: CrashLoopBackOff
Last State: Terminated
Reason: Error
Exit Code: 1
Started: Wed, 05 Jun 2019 17:50:58 +0900
Finished: Wed, 05 Jun 2019 17:50:58 +0900
Ready: False
Restart Count: 3
Environment:
CORE_LEDGER_STATE_STATEDATABASE: CouchDB
CORE_LEDGER_STATE_COUCHDBCONFIG_COUCHDBADDRESS: localhost:5984
CORE_VM_ENDPOINT: unix:///host/var/run/docker.sock
CORE_LOGGING_LEVEL: DEBUG
CORE_PEER_TLS_ENABLED: false
CORE_PEER_GOSSIP_USELEADERELECTION: true
CORE_PEER_GOSSIP_ORGLEADER: false
CORE_PEER_PROFILE_ENABLED: true
CORE_PEER_TLS_CERT_FILE: /etc/hyperledger/fabric/tls/server.crt
CORE_PEER_TLS_KEY_FILE: /etc/hyperledger/fabric/tls/server.key
CORE_PEER_TLS_ROOTCERT_FILE: /etc/hyperledger/fabric/tls/ca.crt
CORE_PEER_ID: peer1.org1
CORE_PEER_ADDRESS: peer1.org1:7051
CORE_PEER_GOSSIP_EXTERNALENDPOINT: peer1.org1:7051
CORE_PEER_LOCALMSPID: Org1MSP
Mounts:
/etc/hyperledger/fabric/msp from certificate (rw,path="peers/peer1.org1/msp")
/etc/hyperledger/fabric/tls from certificate (rw,path="peers/peer1.org1/tls")
/host/var/run/ from run (rw)
/var/run/secrets/kubernetes.io/serviceaccount from default-token-sjp8t (ro)
Conditions:
Type Status
Initialized True
Ready False
ContainersReady False
PodScheduled True
Volumes:
certificate:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: org1-pv
ReadOnly: false
run:
Type: HostPath (bare host directory volume)
Path: /run
HostPathType:
default-token-sjp8t:
Type: Secret (a volume populated by a Secret)
SecretName: default-token-sjp8t
Optional: false
QoS Class: BestEffort
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute for 300s
node.kubernetes.io/unreachable:NoExecute for 300s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Normal Scheduled 2m58s default-scheduler Successfully assigned org1/peer1-org1-7b9cf7fbd4-74b7q to minikube
Normal Pulling 2m55s kubelet, minikube Pulling image "hyperledger/fabric-couchdb:x86_64-1.0.0"
Normal Pulled 90s kubelet, minikube Successfully pulled image "hyperledger/fabric-couchdb:x86_64-1.0.0"
Normal Created 90s kubelet, minikube Created container couchdb
Normal Started 90s kubelet, minikube Started container couchdb
Normal Pulling 90s kubelet, minikube Pulling image "hyperledger/fabric-peer:x86_64-1.0.0"
Normal Pulled 71s kubelet, minikube Successfully pulled image "hyperledger/fabric-peer:x86_64-1.0.0"
Normal Created 21s (x4 over 70s) kubelet, minikube Created container peer1-org1
Normal Started 21s (x4 over 70s) kubelet, minikube Started container peer1-org1
Normal Pulled 21s (x3 over 69s) kubelet, minikube Container image "hyperledger/fabric-peer:x86_64-1.0.0" already present on machine
Warning BackOff 5s (x6 over 68s) kubelet, minikube Back-off restarting failed container
edit 2:
Kubectl get pv
NAME CAPACITY ACCESS MODES RECLAIM POLICY STATUS CLAIM STORAGECLASS REASON AGE
org1-artifacts-pv 500Mi RWX Retain Available 39m
org1-pv 500Mi RWX Retain Available 39m
org2-artifacts-pv 500Mi RWX Retain Available 39m
org2-pv 500Mi RWX Retain Available 39m
orgorderer1-pv 500Mi RWX Retain Available 39m
pvc-aa87a86f-876e-11e9-99ef-080027f6ce3c 10Mi RWX Delete Bound orgorderer1/orgorderer1-pv standard 39m
pvc-aadb69ff-876e-11e9-99ef-080027f6ce3c 10Mi RWX Delete Bound org2/org2-pv standard 39m
pvc-ab2e4d8e-876e-11e9-99ef-080027f6ce3c 10Mi RWX Delete Bound org2/org2-artifacts-pv standard 39m
pvc-abb04335-876e-11e9-99ef-080027f6ce3c 10Mi RWX Delete Bound org1/org1-pv standard 39m
pvc-abfaaf76-876e-11e9-99ef-080027f6ce3c 10Mi RWX Delete Bound org1/org1-artifacts-pv standard 39m
Kubectl get pvc
NAME STATUS VOLUME CAPACITY ACCESS MODES STORAGECLASS AGE
org1-artifacts-pv Bound pvc-abfaaf76-876e-11e9-99ef-080027f6ce3c 10Mi RWX standard 40m
org1-pv Bound pvc-abb04335-876e-11e9-99ef-080027f6ce3c 10Mi RWX standard 40m
edit 3: org1-cli.yaml
apiVersion: v1
kind: PersistentVolume
metadata:
name: org1-artifacts-pv
spec:
capacity:
storage: 500Mi
accessModes:
- ReadWriteMany
hostPath:
path: "/opt/share/channel-artifacts"
# nfs:
# path: /opt/share/channel-artifacts
# server: localhost #change to your nfs server ip here
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: org1
name: org1-artifacts-pv
spec:
accessModes:
- ReadWriteMany
resources:
requests:
storage: 10Mi
---
apiVersion: extensions/v1beta1
kind: Deployment
metadata:
namespace: org1
name: cli
spec:
replicas: 1
strategy: {}
template:
metadata:
labels:
app: cli
spec:
containers:
- name: cli
image: hyperledger/fabric-tools:x86_64-1.0.0
env:
- name: CORE_PEER_TLS_ENABLED
value: "false"
#- name: CORE_PEER_TLS_CERT_FILE
# value: /opt/gopath/src/github.com/hyperledger/fabric/peer/crypto/peerOrganizations/org1/peers/peer0.org1/tls/server.crt
#- name: CORE_PEER_TLS_KEY_FILE
# value: /opt/gopath/src/github.com/hyperledger/fabric/peer/crypto/peerOrganizations/org1/peers/peer0.org1/tls/server.key
#- name: CORE_PEER_TLS_ROOTCERT_FILE
# value: /opt/gopath/src/github.com/hyperledger/fabric/peer/crypto/peerOrganizations/org1/peers/peer0.org1/tls/ca.crt
- name: CORE_VM_ENDPOINT
value: unix:///host/var/run/docker.sock
- name: GOPATH
value: /opt/gopath
- name: CORE_LOGGING_LEVEL
value: DEBUG
- name: CORE_PEER_ID
value: cli
- name: CORE_PEER_ADDRESS
value: peer0.org1:7051
- name: CORE_PEER_LOCALMSPID
value: Org1MSP
- name: CORE_PEER_MSPCONFIGPATH
value: /etc/hyperledger/fabric/msp
workingDir: /opt/gopath/src/github.com/hyperledger/fabric/peer
command: [ "/bin/bash", "-c", "--" ]
args: [ "while true; do sleep 30; done;" ]
volumeMounts:
# - mountPath: /opt/gopath/src/github.com/hyperledger/fabric/peer
# name: certificate
# subPath: scripts
- mountPath: /host/var/run/
name: run
# - mountPath: /opt/gopath/src/github.com/hyperledger/fabric/examples/chaincode/go
# name: certificate
# subPath: chaincode
- mountPath: /etc/hyperledger/fabric/msp
name: certificate
subPath: users/Admin#org1/msp
- mountPath: /opt/gopath/src/github.com/hyperledger/fabric/peer/channel-artifacts
name: artifacts
volumes:
- name: certificate
persistentVolumeClaim:
claimName: org1-pv
- name: artifacts
persistentVolumeClaim:
claimName: org1-artifacts-pv
- name: run
hostPath:
path: /var/run
org1-namespace.yaml
apiVersion: v1
kind: Namespace
metadata:
name: org1
---
apiVersion: v1
kind: PersistentVolume
metadata:
name: org1-pv
spec:
capacity:
storage: 500Mi
accessModes:
- ReadWriteMany
hostPath:
path: /opt/share/crypto-config/peerOrganizations/org1
---
apiVersion: v1
kind: PersistentVolumeClaim
metadata:
namespace: org1
name: org1-pv
spec:
accessModes:
- ReadWriteMany
resources:
requests:
storage: 10Mi
---
edit 3: peer1-org1
apiVersion: extensions/v1beta1
kind: Deployment
metadata:
namespace: org1
name: peer1-org1
spec:
replicas: 1
strategy: {}
template:
metadata:
creationTimestamp: null
labels:
app: hyperledger
role: peer
peer-id: peer1
org: org1
spec:
containers:
- name: couchdb
image: hyperledger/fabric-couchdb:x86_64-1.0.0
ports:
- containerPort: 5984
- name: peer1-org1
image: hyperledger/fabric-peer:x86_64-1.0.0
env:
- name: CORE_LEDGER_STATE_STATEDATABASE
value: "CouchDB"
- name: CORE_LEDGER_STATE_COUCHDBCONFIG_COUCHDBADDRESS
value: "localhost:5984"
- name: CORE_VM_ENDPOINT
value: "unix:///host/var/run/docker.sock"
- name: CORE_LOGGING_LEVEL
value: "DEBUG"
- name: CORE_PEER_TLS_ENABLED
value: "false"
- name: CORE_PEER_GOSSIP_USELEADERELECTION
value: "true"
- name: CORE_PEER_GOSSIP_ORGLEADER
value: "false"
- name: CORE_PEER_PROFILE_ENABLED
value: "true"
- name: CORE_PEER_TLS_CERT_FILE
value: "/etc/hyperledger/fabric/tls/server.crt"
- name: CORE_PEER_TLS_KEY_FILE
value: "/etc/hyperledger/fabric/tls/server.key"
- name: CORE_PEER_TLS_ROOTCERT_FILE
value: "/etc/hyperledger/fabric/tls/ca.crt"
- name: CORE_PEER_ID
value: peer1.org1
- name: CORE_PEER_ADDRESS
value: peer1.org1:7051
- name: CORE_PEER_GOSSIP_EXTERNALENDPOINT
value: peer1.org1:7051
- name: CORE_PEER_LOCALMSPID
value: Org1MSP
workingDir: /opt/gopath/src/github.com/hyperledger/fabric/peer
ports:
- containerPort: 7051
- containerPort: 7052
- containerPort: 7053
command: ["peer"]
args: ["node","start"]
volumeMounts:
#- mountPath: /opt/gopath/src/github.com/hyperledger/fabric/peer/channel-artifacts
# name: certificate
# subPath: channel-artifacts
- mountPath: /etc/hyperledger/fabric/msp
name: certificate
#subPath: crypto-config/peerOrganizations/org1.example.com/peers/peer0.org1.example.com/msp
subPath: peers/peer1.org1/msp
- mountPath: /etc/hyperledger/fabric/tls
name: certificate
#subPath: crypto-config/peerOrganizations/org1.example.com/peers/peer0.org1.example.com/tls/
subPath: peers/peer1.org1/tls
- mountPath: /host/var/run/
name: run
volumes:
- name: certificate
persistentVolumeClaim:
claimName: org1-pv
- name: run
hostPath:
path: /run
---
apiVersion: v1
kind: Service
metadata:
namespace: org1
name: peer1
spec:
selector:
app: hyperledger
role: peer
peer-id: peer1
org: org1
type: NodePort
ports:
- name: externale-listen-endpoint
protocol: TCP
port: 7051
targetPort: 7051
nodePort: 30003
- name: chaincode-listen
protocol: TCP
port: 7052
targetPort: 7052
nodePort: 30004
---
You can do a kubectl edit pod <podname> -n <namespace> and change the command section to sleep 1000000000 then the pod will restart and you can get in there and see whats going. Or just delete the deployment, edit your yaml to remove the peer launch command, redeploy your yaml and see how the directories are laid out.
After a bit searching, I tried to mount the volume to nginx Kubernetes PVC sample. Changing the pods claimName to my created pvc. From there I exec bash to it and explore my file. Then I can see if I did mount the correct folder or not.

Helm chart stuck in PodInitializing state indefinitely

I'm running a microk8s cluster on an Ubuntu server at home, and I have it connected to a local NAS server for persistent storage. I've been using it as my personal proving grounds for learning Kubernetes, but I seem to encounter problem after problem at just about every step of the way.
I've got the NFS Client Provisioner Helm chart installed which I've confirmed works - it will dynamically provision PVCs on my NAS server. I later was able to successfully install the Postgres Helm chart, or so I thought. After creating it I was able to connect to it using a SQL client, and I was feeling good.
Until a couple of days later, I noticed the pod was showing 0/1 containers ready. Although interestingly, the nfs-client-provisioner pod was still showing 1/1. Long story short: I've deleted/purged the Postgres Helm chart, and attempted to reinstall it, but now it no longer works. In fact, nothing new that I try to deploy works. Everything looks as though it's going to work, but then just hangs on either Init or ContainerCreating forever.
With Postgres in particular, the command I've been running is this:
helm install --name postgres stable/postgresql -f postgres.yaml
And my postgres.yaml file looks like this:
persistence:
storageClass: nfs-client
accessMode: ReadWriteMany
size: 2Gi
But if I do a kubectl get pods I see still see this:
NAME READY STATUS RESTARTS AGE
nfs-client-provisioner 1/1 Running 1 11d
postgres-postgresql-0 0/1 Init:0/1 0 3h51m
If I do a kubectl describe pod postgres-postgresql-0, this is the output:
Name: postgres-postgresql-0
Namespace: default
Priority: 0
PriorityClassName: <none>
Node: stjohn/192.168.1.217
Start Time: Thu, 28 Mar 2019 12:51:02 -0500
Labels: app=postgresql
chart=postgresql-3.11.7
controller-revision-hash=postgres-postgresql-5bfb9cc56d
heritage=Tiller
release=postgres
role=master
statefulset.kubernetes.io/pod-name=postgres-postgresql-0
Annotations: <none>
Status: Pending
IP:
Controlled By: StatefulSet/postgres-postgresql
Init Containers:
init-chmod-data:
Container ID:
Image: docker.io/bitnami/minideb:latest
Image ID:
Port: <none>
Host Port: <none>
Command:
sh
-c
chown -R 1001:1001 /bitnami
if [ -d /bitnami/postgresql/data ]; then
chmod 0700 /bitnami/postgresql/data;
fi
State: Waiting
Reason: PodInitializing
Ready: False
Restart Count: 0
Requests:
cpu: 250m
memory: 256Mi
Environment: <none>
Mounts:
/bitnami/postgresql from data (rw)
/var/run/secrets/kubernetes.io/serviceaccount from default-token-h4gph (ro)
Containers:
postgres-postgresql:
Container ID:
Image: docker.io/bitnami/postgresql:10.7.0
Image ID:
Port: 5432/TCP
Host Port: 0/TCP
State: Waiting
Reason: PodInitializing
Ready: False
Restart Count: 0
Requests:
cpu: 250m
memory: 256Mi
Liveness: exec [sh -c exec pg_isready -U "postgres" -h localhost] delay=30s timeout=5s period=10s #success=1 #failure=6
Readiness: exec [sh -c exec pg_isready -U "postgres" -h localhost] delay=5s timeout=5s period=10s #success=1 #failure=6
Environment:
PGDATA: /bitnami/postgresql
POSTGRES_USER: postgres
POSTGRES_PASSWORD: <set to the key 'postgresql-password' in secret 'postgres-postgresql'> Optional: false
Mounts:
/bitnami/postgresql from data (rw)
/var/run/secrets/kubernetes.io/serviceaccount from default-token-h4gph (ro)
Conditions:
Type Status
Initialized False
Ready False
ContainersReady False
PodScheduled True
Volumes:
data:
Type: PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
ClaimName: data-postgres-postgresql-0
ReadOnly: false
default-token-h4gph:
Type: Secret (a volume populated by a Secret)
SecretName: default-token-h4gph
Optional: false
QoS Class: Burstable
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute for 300s
node.kubernetes.io/unreachable:NoExecute for 300s
Events: <none>
And if I do a kubectl get pod postgres-postgresql-0 -o yaml, this is the output:
apiVersion: v1
kind: Pod
metadata:
creationTimestamp: "2019-03-28T17:51:02Z"
generateName: postgres-postgresql-
labels:
app: postgresql
chart: postgresql-3.11.7
controller-revision-hash: postgres-postgresql-5bfb9cc56d
heritage: Tiller
release: postgres
role: master
statefulset.kubernetes.io/pod-name: postgres-postgresql-0
name: postgres-postgresql-0
namespace: default
ownerReferences:
- apiVersion: apps/v1
blockOwnerDeletion: true
controller: true
kind: StatefulSet
name: postgres-postgresql
uid: 0d3ef673-5182-11e9-bf14-b8975a0ca30c
resourceVersion: "1953329"
selfLink: /api/v1/namespaces/default/pods/postgres-postgresql-0
uid: 0d4dfb56-5182-11e9-bf14-b8975a0ca30c
spec:
containers:
- env:
- name: PGDATA
value: /bitnami/postgresql
- name: POSTGRES_USER
value: postgres
- name: POSTGRES_PASSWORD
valueFrom:
secretKeyRef:
key: postgresql-password
name: postgres-postgresql
image: docker.io/bitnami/postgresql:10.7.0
imagePullPolicy: Always
livenessProbe:
exec:
command:
- sh
- -c
- exec pg_isready -U "postgres" -h localhost
failureThreshold: 6
initialDelaySeconds: 30
periodSeconds: 10
successThreshold: 1
timeoutSeconds: 5
name: postgres-postgresql
ports:
- containerPort: 5432
name: postgresql
protocol: TCP
readinessProbe:
exec:
command:
- sh
- -c
- exec pg_isready -U "postgres" -h localhost
failureThreshold: 6
initialDelaySeconds: 5
periodSeconds: 10
successThreshold: 1
timeoutSeconds: 5
resources:
requests:
cpu: 250m
memory: 256Mi
securityContext:
procMount: Default
runAsUser: 1001
terminationMessagePath: /dev/termination-log
terminationMessagePolicy: File
volumeMounts:
- mountPath: /bitnami/postgresql
name: data
- mountPath: /var/run/secrets/kubernetes.io/serviceaccount
name: default-token-h4gph
readOnly: true
dnsPolicy: ClusterFirst
enableServiceLinks: true
hostname: postgres-postgresql-0
initContainers:
- command:
- sh
- -c
- |
chown -R 1001:1001 /bitnami
if [ -d /bitnami/postgresql/data ]; then
chmod 0700 /bitnami/postgresql/data;
fi
image: docker.io/bitnami/minideb:latest
imagePullPolicy: Always
name: init-chmod-data
resources:
requests:
cpu: 250m
memory: 256Mi
securityContext:
procMount: Default
runAsUser: 0
terminationMessagePath: /dev/termination-log
terminationMessagePolicy: File
volumeMounts:
- mountPath: /bitnami/postgresql
name: data
- mountPath: /var/run/secrets/kubernetes.io/serviceaccount
name: default-token-h4gph
readOnly: true
nodeName: stjohn
priority: 0
restartPolicy: Always
schedulerName: default-scheduler
securityContext:
fsGroup: 1001
serviceAccount: default
serviceAccountName: default
subdomain: postgres-postgresql-headless
terminationGracePeriodSeconds: 30
tolerations:
- effect: NoExecute
key: node.kubernetes.io/not-ready
operator: Exists
tolerationSeconds: 300
- effect: NoExecute
key: node.kubernetes.io/unreachable
operator: Exists
tolerationSeconds: 300
volumes:
- name: data
persistentVolumeClaim:
claimName: data-postgres-postgresql-0
- name: default-token-h4gph
secret:
defaultMode: 420
secretName: default-token-h4gph
status:
conditions:
- lastProbeTime: null
lastTransitionTime: "2019-03-28T17:51:02Z"
message: 'containers with incomplete status: [init-chmod-data]'
reason: ContainersNotInitialized
status: "False"
type: Initialized
- lastProbeTime: null
lastTransitionTime: "2019-03-28T17:51:02Z"
message: 'containers with unready status: [postgres-postgresql]'
reason: ContainersNotReady
status: "False"
type: Ready
- lastProbeTime: null
lastTransitionTime: "2019-03-28T17:51:02Z"
message: 'containers with unready status: [postgres-postgresql]'
reason: ContainersNotReady
status: "False"
type: ContainersReady
- lastProbeTime: null
lastTransitionTime: "2019-03-28T17:51:02Z"
status: "True"
type: PodScheduled
containerStatuses:
- image: docker.io/bitnami/postgresql:10.7.0
imageID: ""
lastState: {}
name: postgres-postgresql
ready: false
restartCount: 0
state:
waiting:
reason: PodInitializing
hostIP: 192.168.1.217
initContainerStatuses:
- image: docker.io/bitnami/minideb:latest
imageID: ""
lastState: {}
name: init-chmod-data
ready: false
restartCount: 0
state:
waiting:
reason: PodInitializing
phase: Pending
qosClass: Burstable
startTime: "2019-03-28T17:51:02Z"
I don't see anything obvious in these to be able to pinpoint what might be going on. And I've already rebooted the server just to see if that might help. Any thoughts? Why won't my containers start?
It looks like your initContainer is stuck in the PodInitializing state. The most likely scenario is that your PVCs are not ready. I recommend you describe your data-postgres-postgresql-0 PVC to make sure that the volume has actually been provisioned and is in the READY state. Your NFS provisioner may be working, but that specific PV/PVC may not have been created due to an error. I have run into similar phenomena with the EFS provisioner with AWS.
You can use the event command of kubectl. This will give you the event for your pod.
To filter for a specific pod you can use a field-selector:
kubectl get event --namespace abc-namespace --field-selector involvedObject.name=my-pod-zl6m6

kubernetes Pod's readinessProbe errored but endpoint not removed from Service

I'm running Spinnaker on Kubernetes 1.10.111. One of the Spinnaker services is a Pod running a service called Clouddriver. This Pod was running fine, but then the readinessProbe started erroring continuously. Kubernetes docs say
readinessProbe: Indicates whether the Container is ready to service requests. If the readiness probe fails, the endpoints controller removes the Pod’s IP address from the endpoints of all Services that match the Pod.
— https://kubernetes.io/docs/concepts/workloads/pods/pod-lifecycle/#container-probes
But this Pod's IP is still in the Service's endpoints. Why?
Clouddriver Pod YAML
kubectl -n spinnaker-test get pods spin-clouddriver-5559d44484-mp8q9 -o yaml
apiVersion: v1
kind: Pod
metadata:
annotations:
kubernetes.io/psp: spotify.backend-service
creationTimestamp: 2019-02-15T20:46:38Z
generateName: spin-clouddriver-5559d44484-
labels:
app: spin
app.kubernetes.io/managed-by: halyard
app.kubernetes.io/name: clouddriver
app.kubernetes.io/part-of: spinnaker
app.kubernetes.io/version: 1.12.1
cluster: spin-clouddriver
pod-template-hash: "1115800040"
name: spin-clouddriver-5559d44484-mp8q9
namespace: spinnaker-test
ownerReferences:
- apiVersion: extensions/v1beta1
blockOwnerDeletion: true
controller: true
kind: ReplicaSet
name: spin-clouddriver-5559d44484
uid: ce79561c-3161-11e9-acdf-42010a800082
resourceVersion: "53541277"
selfLink: /api/v1/namespaces/spinnaker-test/pods/spin-clouddriver-5559d44484-mp8q9
uid: caa66d7c-3162-11e9-acdf-42010a800082
spec:
containers:
- env:
- name: JAVA_OPTS
value: -XX:+UnlockExperimentalVMOptions -XX:+UseCGroupMemoryLimitForHeap -XX:MaxRAMFraction=2
- name: SPRING_PROFILES_ACTIVE
value: local
image: gcr.io/spinnaker-marketplace/clouddriver:4.3.1-20190130095322
imagePullPolicy: IfNotPresent
lifecycle: {}
name: clouddriver
ports:
- containerPort: 7002
protocol: TCP
readinessProbe:
exec:
command:
- wget
- --no-check-certificate
- --spider
- -q
- http://localhost:7002/health
failureThreshold: 3
periodSeconds: 10
successThreshold: 1
timeoutSeconds: 1
resources:
limits:
cpu: "20"
memory: 5000Mi
requests:
cpu: "20"
memory: 5000Mi
securityContext:
allowPrivilegeEscalation: false
terminationMessagePath: /dev/termination-log
terminationMessagePolicy: File
volumeMounts:
- mountPath: /opt/spinnaker/config
name: spin-clouddriver-files-1952526246
- mountPath: /home/halyard/.hal/k8s-spinnaker/staging/dependencies
name: spin-clouddriver-files-1757773194
- mountPath: /var/run/secrets/kubernetes.io/serviceaccount
name: default-token-w2lt5
readOnly: true
dnsPolicy: ClusterFirst
nodeName: gke-production-us-ce-terraform-201812-d63606d6-9vq9
restartPolicy: Always
schedulerName: default-scheduler
securityContext: {}
serviceAccount: default
serviceAccountName: default
terminationGracePeriodSeconds: 720
tolerations:
- effect: NoExecute
key: node.kubernetes.io/not-ready
operator: Exists
tolerationSeconds: 300
- effect: NoExecute
key: node.kubernetes.io/unreachable
operator: Exists
tolerationSeconds: 300
volumes:
- name: spin-clouddriver-files-1952526246
secret:
defaultMode: 420
secretName: spin-clouddriver-files-1952526246
- name: spin-clouddriver-files-1757773194
secret:
defaultMode: 420
secretName: spin-clouddriver-files-1757773194
- name: default-token-w2lt5
secret:
defaultMode: 420
secretName: default-token-w2lt5
status:
conditions:
- lastProbeTime: null
lastTransitionTime: 2019-02-15T20:46:38Z
status: "True"
type: Initialized
- lastProbeTime: null
lastTransitionTime: 2019-02-15T20:53:40Z
status: "True"
type: Ready
- lastProbeTime: null
lastTransitionTime: 2019-02-15T20:46:38Z
status: "True"
type: PodScheduled
containerStatuses:
- containerID: docker://3509b48511b1ea7bc97812cb82831c559d9410cb9eaaa26b4f492d881603fb31
image: gcr.io/spinnaker-marketplace/clouddriver:4.3.1-20190130095322
imageID: docker-pullable://gcr.io/spinnaker-marketplace/clouddriver#sha256:466228b97b8c4a61a0270c53ae4c397eb04bc3661bc4f1ee9ef4d5fce70d187d
lastState: {}
name: clouddriver
ready: true
restartCount: 0
state:
running:
startedAt: 2019-02-15T20:47:26Z
hostIP: 10.178.32.98
phase: Running
podIP: 10.179.34.24
qosClass: Guaranteed
startTime: 2019-02-15T20:46:38Z
Describing the Pod shows the readinessProbe has been continuously erroring for over a day.
kubectl -n spinnaker-test describe pods spin-clouddriver-5559d44484-mp8q9
Name: spin-clouddriver-5559d44484-mp8q9
Namespace: spinnaker-test
Node: gke-production-us-ce-terraform-201812-d63606d6-9vq9/10.178.32.98
Start Time: Fri, 15 Feb 2019 15:46:38 -0500
Labels: app=spin
app.kubernetes.io/managed-by=halyard
app.kubernetes.io/name=clouddriver
app.kubernetes.io/part-of=spinnaker
app.kubernetes.io/version=1.12.1
cluster=spin-clouddriver
pod-template-hash=1115800040
Annotations: kubernetes.io/psp=spotify.backend-service
Status: Running
IP: 10.179.34.24
Controlled By: ReplicaSet/spin-clouddriver-5559d44484
Containers:
clouddriver:
Container ID: docker://3509b48511b1ea7bc97812cb82831c559d9410cb9eaaa26b4f492d881603fb31
Image: gcr.io/spinnaker-marketplace/clouddriver:4.3.1-20190130095322
Image ID: docker-pullable://gcr.io/spinnaker-marketplace/clouddriver#sha256:466228b97b8c4a61a0270c53ae4c397eb04bc3661bc4f1ee9ef4d5fce70d187d
Port: 7002/TCP
Host Port: 0/TCP
State: Running
Started: Fri, 15 Feb 2019 15:47:26 -0500
Ready: True
Restart Count: 0
Limits:
cpu: 20
memory: 5000Mi
Requests:
cpu: 20
memory: 5000Mi
Readiness: exec [wget --no-check-certificate --spider -q http://localhost:7002/health] delay=0s timeout=1s period=10s #success=1 #failure=3
Environment:
JAVA_OPTS: -XX:+UnlockExperimentalVMOptions -XX:+UseCGroupMemoryLimitForHeap -XX:MaxRAMFraction=2
SPRING_PROFILES_ACTIVE: local
Mounts:
/home/halyard/.hal/k8s-spinnaker/staging/dependencies from spin-clouddriver-files-1757773194 (rw)
/opt/spinnaker/config from spin-clouddriver-files-1952526246 (rw)
/var/run/secrets/kubernetes.io/serviceaccount from default-token-w2lt5 (ro)
Conditions:
Type Status
Initialized True
Ready True
PodScheduled True
Volumes:
spin-clouddriver-files-1952526246:
Type: Secret (a volume populated by a Secret)
SecretName: spin-clouddriver-files-1952526246
Optional: false
spin-clouddriver-files-1757773194:
Type: Secret (a volume populated by a Secret)
SecretName: spin-clouddriver-files-1757773194
Optional: false
default-token-w2lt5:
Type: Secret (a volume populated by a Secret)
SecretName: default-token-w2lt5
Optional: false
QoS Class: Guaranteed
Node-Selectors: <none>
Tolerations: node.kubernetes.io/not-ready:NoExecute for 300s
node.kubernetes.io/unreachable:NoExecute for 300s
Events:
Type Reason Age From Message
---- ------ ---- ---- -------
Warning Unhealthy 3m (x321 over 1d) kubelet, gke-production-us-ce-terraform-201812-d63606d6-9vq9 Readiness probe errored: rpc error: code = DeadlineExceeded desc = context deadline exceeded
But Service still has the Pod's IP of 10.179.34.24 in its Endpoints.
kubectl -n spinnaker-test describe services spin-clouddriver
Name: spin-clouddriver
Namespace: spinnaker-test
Labels: app=spin
cluster=spin-clouddriver
Annotations: kubectl.kubernetes.io/last-applied-configuration={"apiVersion":"v1","kind":"Service","metadata":{"annotations":{},"labels":{"app":"spin","cluster":"spin-clouddriver"},"name":"spin-clouddriver","namesp...
Selector: app=spin,cluster=spin-clouddriver
Type: ClusterIP
IP: 10.178.65.100
Port: <unset> 7002/TCP
TargetPort: 7002/TCP
Endpoints: 10.179.34.24:7002
Session Affinity: None
Events: <none>
kubectl -n spinnaker-test describe endpoints spin-clouddriver
Name: spin-clouddriver
Namespace: spinnaker-test
Labels: app=spin
cluster=spin-clouddriver
Annotations: <none>
Subsets:
Addresses: 10.179.34.24
NotReadyAddresses: <none>
Ports:
Name Port Protocol
---- ---- --------
<unset> 7002 TCP
Events: <none>
footnotes
GKE 1.10.11-gke.1 to be exact, but the fact that it's GKE shouldn't matter.
A probe by the kubelet can end in one of three states:
successful
failed (command returned a non-0 exit code)
errored (command did not return before the timeout elapsed, the command does not exist inside the container, etc)
Here is the code (in 1.10.11) where the event probe errored is recorded. Note that err != nil.
Here is the code that calls the above function - when err != nil (the probe returned an error), the result is discarded.
Only probes that fail will actually cause the pod's ready state to be changed.