Perl CPAN can't install Tkx - perl

I'm trying to install Tkx on my Mac, with Perl 5.16.0 under perlbrew. Keep getting this error:
Test Summary Report
-------------------
t/tcl.t (Wstat: 0 Tests: 18 Failed: 1)
Failed test: 18
Files=8, Tests=54, 8 wallclock secs ( 0.04 usr 0.02 sys + 1.58 cusr 0.83 csys = 2.47 CPU)
Result: FAIL
Failed 1/8 test programs. 1/54 subtests failed.
make: *** [test_dynamic] Error 255
GAAS/Tkx-1.09.tar.gz
/usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports GAAS/Tkx-1.09.tar.gz
Running make install
make test had returned bad status, won't install without force
Failed during this command:
GAAS/Tkx-1.09.tar.gz : make_test NO
When I execute reports GAAS/Tkx-1.09.tar.gz (inside the CPAN shell) I get this:
Distribution: G/GA/GAAS/Tkx-1.09.tar.gz
Fetching 'http://www.cpantesters.org/show/Tkx.yaml'...DONE
Catching error: "CPAN::Exception::yaml_process_error=HASH(0x7fb392b404b8)" at /Users/daryl/perl5/perlbrew/perls/perl-5.16.0/lib/5.16.0/CPAN.pm line 392.
CPAN::shell() called at -e line 1
Early in this process, I noticed that in the directory ~/.cpan/sources/authors/id about half the directories were owned by root, the others by me. I did "chown -R $USER" at the .cpan level and all my other installs have been okay. Also, "install Tk" succeeded; I guess I can revert to Tk but I really wanted to try Tkx. So much so that I ran "notest install Tk". I'm sure I'll run into an issue soon, so if there is an answer to this problem, I'd love to hear it.

Tkx was last released ten years ago and has twice as many FAIL as PASS reports in CPAN Testers. I don't think you really want to try Tkx unless you have the gumption and time to fix it yourself.
This really isn't an issue with CPAN or the cpan client. Your next step is to try to install it by hand and see what the output is. Then investigate what that test is doing to see why it fails.

I recently adopted Tkx and published release 1.10, which allows installation to proceed despite the t/tcl.t test 18 failure.
This test failure had been reported at RT #115662 and several other places. It appears to have been caused by unexpected but minor changes to error message formatting in newer Tcl.pm. Pending the issue actually being fixed, it is not something which Tkx should abort installation over.

I tried to install Tkx on macOS Catalina, perlbrew with perl version 5.30.1 Running cpanm Tkx fails with the package Tcl. It is the tests for the package Tcl that fails (first): failed 20/20 test programs. 0/0 subtests failed.:
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Tcl.bs blib/arch/auto/Tcl/Tcl.bs 644
PERL_DL_NONLAZY=1 "/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/call.t .............
No subtests run
t/constants.t ........
No subtests run
t/createcmd.t ........
No subtests run
t/disposal-subs-a.t ..
No subtests run
t/disposal-subs-b.t ..
No subtests run
t/disposal-subs-c.t ..
No subtests run
t/disposal-subs-d.t ..
No subtests run
t/disposal-subs-e.t ..
No subtests run
t/disposal-subs-f.t ..
No subtests run
t/disposal-subs.t ....
No subtests run
t/eval.t .............
No subtests run
t/export_to_tcl.t ....
Failed 4/4 subtests
t/info.t .............
[...]
Files=20, Tests=0, 2 wallclock secs ( 0.07 usr 0.05 sys + 0.39 cusr 0.17 csys = 0.68 CPU)
Result: FAIL
Failed 20/20 test programs. 0/0 subtests failed.
If I download the distribution and run one of the tests manually, I get a segfault:
$ perl -Iblib/lib -Iblib/arch t/call.t
[1] 66551 segmentation fault perl -Iblib/lib -Iblib/arch t/call.t
See also this bug report.

Related

Failed installation of Archive::Extract with Cpan

I have installed ActivePerl in order to run a bioinformatic tool.
after running the tool on Windows PowerShell I got this message:
Perl module Archive::Extract (in core since 2007-07-07) is not installed on this machine!
Perl modules are available for download at http://www.cpan.org/
If you have CPAN installed try the following: cpan install
Archive::Extract exit
If you are on Mac or Unix you should run cpan with sudo: sudo cpan
install Archive::Extract exit
So I tried to install it:
cpan
install Archive::Extract
and got this:
"C:\Perl64\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/.t
t/01_Archive-Extract.t .. # Older versions of Archive::Zip may cause File::Spec warnings
See bug #19713 in rt.cpan.org. It is safe to ignore them
t/01_Archive-Extract.t .. 87/?
As I'm not adept at this I thought that I should try to install again the Archive::Zip
install Archive::Zip
but I got :
t/25_traversal.t .............. 1/41
Failed test 'Tree extraction aborted'
at t/25_traversal.t line 97.
got: '0'
expected: '2'
Looks like you failed 1 test of 41.
t/25_traversal.t .............. Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/41 subtests
(less 32 skipped subtests: 8 okay)
Test Summary Report
t/25_traversal.t (Wstat: 256 Tests: 41 Failed: 1)
Failed test: 16
Non-zero exit status: 1
Files=25, Tests=346, 18 wallclock secs ( 0.19 usr + 0.13 sys = 0.31 CPU)
Result: FAIL
Failed 1/25 test programs. 1/346 subtests failed.
dmake.exe: Error code 129, while making 'test_dynamic'
Could you please explain what's the particular problem in order to understand it and how can I solve it?
I don't know if it's a naive question as I have just started learning about command line tools, Linux, Perl etc.
Active Perl uses the ppm script to install modules, mixing this with cpan can cause the problems you have seen above. You may find that using Strawberry Perl works better for you as this comes with a c compiler that will allow you to install non pure Perl modules from cpan

Failing to install MIME::Base64 using cpan [closed]

Closed. This question is not reproducible or was caused by typos. It is not currently accepting answers.
This question was caused by a typo or a problem that can no longer be reproduced. While similar questions may be on-topic here, this one was resolved in a way less likely to help future readers.
Closed 5 years ago.
Improve this question
Please help me to install
MIME::Base64
using cpan
I'm getting the following error message:
[root#vmi125816 ~]# cpan use MIME::Base64;
Reading '/root/.cpan/Metadata'
Database was generated on Fri, 30 Jun 2017 23:29:02 GMT
Running install for module 'use'
Running make for A/AU/AUDREYT/use-0.05.tar.gz
Checksum for /root/.cpan/sources/authors/id/A/AU/AUDREYT/use-0.05.tar.gz ok
CPAN.pm: Building A/AU/AUDREYT/use-0.05.tar.gz
Cannot determine license info from lib/use.pm
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for use
Writing MYMETA.yml and MYMETA.json
cp lib/use/perl5.pm blib/lib/use/perl5.pm
cp lib/use.pm blib/lib/use.pm
Manifying 2 pod documents
AUDREYT/use-0.05.tar.gz
/usr/bin/make -- OK
Running make test
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'inc', 'blib/lib', 'blib/arch')" t/*.t
t/0-signature.t .. ok
t/1-basic.t ...... Undefined subroutine &main::ok called at t/1-basic.t line 2.
# Looks like your test exited with 255 before it could output anything.
t/1-basic.t ...... Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1/1 subtests
Test Summary Report
-------------------
t/1-basic.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 1 tests but ran 0.
Files=2, Tests=1, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.05 cusr 0.01 csys = 0.08 CPU)
Result: FAIL
Failed 1/2 test programs. 0/1 subtests failed.
make: *** [test_dynamic] Error 255
AUDREYT/use-0.05.tar.gz
/usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports AUDREYT/use-0.05.tar.gz
Running make install
make test had returned bad status, won't install without force
MIME::Base64 is up to date (3.15).
[root#vmi125816 ~]#
You are encountering an error installing the module named use, a module you accidentally asked to install by doing
cpan use MIME::Base64
instead of
cpan MIME::Base64
Since you don't need the module anyway, it doesn't matter that it's buggy. Just run the correct command.

trouble installing Tkx perl module in Ubuntu 14.04

In order to install a package called PrimerMapper for designing primers on Ubuntu 14.04, I need to install a perl module called Tkx but facing trouble in installing it. So, kindly assist me in resolving this bug.
For your quick and easy reference, I am pasting complete commands of installation. Thanks a lot
**adnan#adnan-Inspiron-N5110[Tkx-1.09]** sudo perl Makefile.PL
Writing Makefile for Tkx
Writing MYMETA.yml and MYMETA.json
**adnan#adnan-Inspiron-N5110[Tkx-1.09]** sudo make
Skip blib/lib/Tkx/Tutorial.pod (unchanged)
Skip blib/lib/Tkx.pm (unchanged)
Skip blib/lib/Tkx/MegaConfig.pm (unchanged)
Skip blib/lib/Tkx/LabEntry.pm (unchanged)
cp tkx-prove blib/script/tkx-prove
/usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/tkx-prove
cp tkx-ed blib/script/tkx-ed
/usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/tkx-ed
Manifying blib/man1/tkx-ed.1p
Manifying blib/man3/Tkx::MegaConfig.3pm
Manifying blib/man3/Tkx::LabEntry.3pm
Manifying blib/man3/Tkx::Tutorial.3pm
Manifying blib/man3/Tkx.3pm
**adnan#adnan-Inspiron-N5110[Tkx-1.09]** sudo make test
PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/LabEntry.t ...... 1/2 (in cleanup) Can't call method "DeleteCommand" on an undefined value at /usr/local/lib/perl/5.18.2/Tcl.pm line 655 during global destruction.
t/LabEntry.t ...... ok
t/mega-config.t ... ok
t/mega.t .......... ok
t/nul-char.t ...... ok
t/tcl-callback.t .. 1/7 (in cleanup) Can't call method "DeleteCommand" on an undefined value at /usr/local/lib/perl/5.18.2/Tcl.pm line 655 during global destruction.
t/tcl-callback.t .. ok
t/tcl.t ........... 1/18 # Test 18 got: "Tcl error 'Foo at /usr/local/lib/perl/5.18.2/Tcl.pm line 585.\n' while invoking scalar result call:\n\t\"error Foo\" at /usr/local/lib/perl/5.18.2/Tcl.pm line 588.\n\tTcl::call('Tcl=SCALAR(0x1b2ce48)', 'error', 'Foo') called at /media/windows/NGS/GATK_FINAL_PIPELINE/PrimerMapper-master/Tkx-1.09/blib/lib/Tkx.pm line 329\n\teval {...} called at /media/windows/NGS/GATK_FINAL_PIPELINE/PrimerMapper-master/Tkx-1.09/blib/lib/Tkx.pm line 329\n\tTkx::i::call('error', 'Foo') called at /media/windows/NGS/GATK_FINAL_PIPELINE/PrimerMapper-master/Tkx-1.09/blib/lib/Tkx.pm line 51\n\tTkx::AUTOLOAD('Foo') called at t/tcl.t line 38\n\teval {...} called at t/tcl.t line 38\n" (t/tcl.t at line 39)
# Expected: "Foo at t/tcl.t line 38.\n"
# t/tcl.t line 39 is: ok($#, "Foo at #{[__FILE__]} line #{[__LINE__ - 1]}.\n");
t/tcl.t ........... Failed 1/18 subtests
t/tk.t ............ 12/12 (in cleanup) Can't call method "DeleteCommand" on an undefined value at /usr/local/lib/perl/5.18.2/Tcl.pm line 655 during global destruction.
t/tk.t ............ ok
t/utf8.t .......... ok
Test Summary Report
-------------------
t/tcl.t (Wstat: 0 Tests: 18 Failed: 1)
Failed test: 18
Files=8, Tests=54, 9 wallclock secs ( 0.15 usr 0.03 sys + 1.85 cusr 0.31 csys = 2.34 CPU)
Result: FAIL
Failed 1/8 test programs. 1/54 subtests failed.
make: *** [test_dynamic] Error 255
GAAS/Tkx-1.09.tar.gz
/usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports GAAS/Tkx-1.09.tar.gz
Running make install
make test had returned bad status, won't install without force
Failed during this command:
GAAS/Tkx-1.09.tar.gz : make_test NO
The error is that the tests of the module don't pass successfully.
One thing I would try first is to try to install the module with cpan or cpanminus (cpan Tkx or cpanm Tkx). You (or the Makefile.PL) may have missed something that could be causing this error.
I see you already opened a bug report on CPAN. You can see in cpantesters that this module has the tests broken (you could check with your particular Perl version) and there is also another bug report from 5 years ago reporting broken tests for the very same version that's currently on CPAN (1.09).
Considering this I think your options is to skip the tests and see if it works for your purposes.
I recently adopted Tkx and published release 1.10, which allows installation to proceed despite the t/tcl.t test 18 failure.
The test failure appears to have been caused by unexpected but minor changes to error message formatting in newer Tcl.pm. Pending the issue actually being fixed, it is not something which Tkx should abort installation over.
There's already a packaged version of Tkx for Ubuntu, so all it should take to get Tkx and any of its dependencies is:
sudo apt-get install libperl-tkx

Why does installing Number::Format on Win 64 fail?

I'm trying to install Number::Format to use with Padre on Windows:
cpanm Number::Format
I get the following error. How can I fix this?
cpanm (App::cpanminus) 1.7034 on perl 5.020002 built for MSWin32-x86-multi-thread-64int
Work directory is C:\Users\admin/.cpanm/work/1433356714.11300
You have make C:\STRAWB~1\c\bin\dmake.exe
You have LWP 6.08
Falling back to Archive::Tar 2.04
Searching Number::Format () on cpanmetadb ...
--> Working on Number::Format
Fetching http://www.cpan.org/authors/id/W/WR/WRW/Number-Format-1.73.tar.gz
-> OK
Unpacking Number-Format-1.73.tar.gz
Entering Number-Format-1.73
Checking configure dependencies from META.yml
Configuring Number-Format-1.73
Running Makefile.PL
Checking if your kit is complete...
Looks good
Generating a dmake-style Makefile
Writing Makefile for Number::Format
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have POSIX 0 ... Yes (1.38_03)
Checking if you have ExtUtils::MakeMaker 0 ... Yes (6.98)
Checking if you have Test::More 0 ... Yes (1.001014)
Checking if you have Carp 0 ... Yes (1.3301)
Building and testing Number-Format-1.73
cp Format.pm blib\lib\Number\Format.pm
C:\Perl\bin\perl.exe "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/format_bytes.t ..... ok
t/format_negative.t .. ok
t/format_number.t .... ok
t/format_picture.t ... ok
t/format_price.t ..... ok
Invalid sep_by_space value at t/locale.t line 77.
# Looks like your test exited with 255 just after 5.
t/locale.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
All 5 subtests passed
(less 3 skipped subtests: 2 okay)
t/object.t ........... ok
t/round.t ............ ok
t/unformat_number.t .. ok
Test Summary Report
-------------------
t/locale.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Files=9, Tests=147, 1 wallclock secs ( 0.11 usr + 0.03 sys = 0.14 CPU)
Result: FAIL
Failed 1/9 test programs. 0/147 subtests failed.
dmake.exe: Error code 255, while making 'test_dynamic'
-> FAIL Installing Number::Format failed. See C:\Users\admin\.cpanm\work\1433356714.11300\build.log for details. Retry with --force to force install it.
There's already a bug report for this. The issue hasn't been fixed yet, but somebody uploaded a patch that you can try:
Reason seems to be the POSIX module, which returns many "-1" values where Number::Format->new() expects missing hash keys... I was able to successfully test and install by using the attached patch as a workaround. But it might be smarter to fix this problem in the POSIX module.
Any time a module fails to build, you should check the CPAN Testers report. The tests are failing for Perl 5.20.0 on Window x64, so it's not just you.

Installing GD library for perl on MacOSX 10.6

I have been trying to install GD library for perl to no avail a long while now. I've tried every little thing I could find on the internets but nothing. I am trying to get Circos graphs which require the GD package.
When I try to install it through CPAN it gives me this error:
Running make test
PERL_DL_NONLAZY=1 /usr/bin/perl/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/GD.t ........ 1/12 Can't load './blib/arch/auto/GD/GD.bundle' for module GD: dlopen(./blib/arch/auto/GD/GD.bundle, 2): Symbol not found: _jpeg_resync_to_restart
Referenced from: /usr/lib/libgd.2.dylib
Expected in: flat namespace
in /usr/lib/libgd.2.dylib at /opt/local/lib/perl5/5.14.1/darwin-multi-2level/DynaLoader.pm line 194.
at t/GD.t line 14
Compilation failed in require at t/GD.t line 14.
BEGIN failed--compilation aborted at t/GD.t line 14.
t/GD.t ........ Dubious, test returned 2 (wstat 512, 0x200)
Failed 12/12 subtests
t/Polyline.t .. Can't load '/Users/zehira/.cpan/build/GD-2.46-mp3nuO/blib/arch/auto/GD/GD.bundle' for module GD: dlopen(/Users/zehira/.cpan/build/GD-2.46-mp3nuO/blib/arch/auto/GD/GD.bundle, 2): Symbol not found: _jpeg_resync_to_restart
Referenced from: /usr/lib/libgd.2.dylib
Expected in: flat namespace
in /usr/lib/libgd.2.dylib at /opt/local/lib/perl5/5.14.1/darwin-multi-2level/DynaLoader.pm line 194.
at /Users/zehira/.cpan/build/GD-2.46-mp3nuO/blib/lib/GD/Polyline.pm line 45
Compilation failed in require at /Users/zehira/.cpan/build/GD-2.46-mp3nuO/blib/lib/GD/Polyline.pm line 45.
BEGIN failed--compilation aborted at /Users/zehira/.cpan/build/GD-2.46-mp3nuO/blib/lib/GD/Polyline.pm line 45.
Compilation failed in require at t/Polyline.t line 10.
BEGIN failed--compilation aborted at t/Polyline.t line 10.
t/Polyline.t .. Dubious, test returned 2 (wstat 512, 0x200)
Failed 1/1 subtests
Test Summary Report
-------------------
t/GD.t (Wstat: 512 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 2
Parse errors: Bad plan. You planned 12 tests but ran 1.
t/Polyline.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 1 tests but ran 0.
Files=2, Tests=1, 0 wallclock secs ( 0.02 usr 0.01 sys + 0.04 cusr 0.01 csys = 0.08 CPU)
Result: FAIL
Failed 2/2 test programs. 1/1 subtests failed.
make: *** [test_dynamic] Error 2
LDS/GD-2.46.tar.gz
make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports LDS/GD-2.46.tar.gz
Running make install
make test had returned bad status, won't install without force
Failed during this command:
LDS/GD-2.46.tar.gz : make_test NO
I tried to reinstall jpeg libraries with --enable-shared --enable-static options but didn't help either. I also installed a MacPorts version of perl thinking I might have messed up the perl installation that comes with my mac. Anyone have any idea why this might be happening?
(yes, I'm relatively new to the world of terminal and all this and am still trying to navigate my way around)
Thanks!
I have solved this issue using homebrew to install libgd first, and then cpan. It worked perfectly.
brew install libgd
cpan install GD
i installed it step by step without any problem by
http://zientzilaria.herokuapp.com/blog/2012/06/03/installing-circos-on-os-x/
maybe that helps...
Firstly I'm also a circos user :) It's really not simple to install circos on win/linux/mac for perl and the modules circos needs .
Above my practice you'd better do like this from very begin:
install perl (choose the very popular new version)
install circos (ref http://circos.ca/software/installation/)
install the modules circos needs but exclude GD : this is easy, just download and copy, or install by CPAN (ref http://www.rcbowen.com/imho/perl/modules.html)
install GD : GD is a special module (not platform independently ), and you should build it on your OS and then install : http://www.sharedproteomics.com/forum/showthread.php?325-Installing-GD-on-Mac-OSX-10.6
It looks like your problem is at step3 !!! If Google can not help you to make it, another way to request help is using circos's google group: http://groups.google.com/group/circos-data-visualization there Martin and other circos users will help you directly.
For prerequisite of Circos installation, the documentation from CircosAPI is very helpful. It was written for OSX 10.8, and still works for OS X Yosemiteā€ˇ.
http://kylase.github.io/CircosAPI/os-x-installation-guide/
You need libgd. If you are using ubuntu & you can get it using
sudo apt-get install libgd-gd2-perl
Then you can follow the normal procedure as mentioned in circos installation instructions.