Minimum distance between two axis-aligned boxes in n-dimensions - box

Question: How can I efficiently compute the minimum distance between two axis-aligned boxes in n-dimensions?
Box format: The boxes, A and B, are given by their minimum and maximum points, A_min, A_max, B_min, B_max, each of which is a n-dimensional vector. That is, the boxes may be written mathematically as the following cartesian products of intervals:
A = [A_min(1), A_max(1)] x [A_min(2), A_max(2)] x ... x [A_min(n), A_max(n)]
B = [B_min(1), B_max(1)] x [B_min(2), B_max(2)] x ... x [B_min(n), B_max(n)]
Picture: here is a picture demonstrating the idea in 2D:
Note: Note: I ask this question, and answer it myself, because this question (in general n-dimensional form) appears to be absent from stackoverflow even after all these years. Good answers to this question are hard to find on the internet more generally. After googling around, I eventually had to figure this out myself, and am posting here to spare future people the same trouble.

The minimum distance between the boxes is given by:
dist = sqrt(||u||^2 + ||v||^2)
where
u = max(0, A_min - B_max)
v = max(0, B_min - A_max)
The maximization is done entrywise on the vectors (i.e., max(0, w) means replace all negative entries of vector w with zero, but leave the positive entries unchanged). The notation ||w|| means the euclidean norm of the vector w (square root of the sum of the squares of the entries).
This does not require any case-by-case analysis, and works for any dimension regardless of where the boxes are with respect to each other.
python code:
import numpy as np
def boxes_distance(A_min, A_max, B_min, B_max):
delta1 = A_min - B_max
delta2 = B_min - A_max
u = np.max(np.array([np.zeros(len(delta1)), delta1]), axis=0)
v = np.max(np.array([np.zeros(len(delta2)), delta2]), axis=0)
dist = np.linalg.norm(np.concatenate([u, v]))
return dist

type Rect = { x: number; y: number; length: number; width: number };
export function boxesDistance(a: Rect, b: Rect) {
const deltas = [a.x - b.x - b.width, a.y - b.y - b.length, b.x - a.x - a.width, b.y - a.y - a.length];
const sum = deltas.reduce((total, d) => {
return d > 0 ? total + d ** 2 : total;
}, 0);
return Math.sqrt(sum);
}
This is the equivalent code in typescript without the use of any libraries, though the input parameters were slightly different in my case.

The distance between two axis-aligned bounding boxes (AABB) can be computed as follows:
Find the intersection box of two input boxes, which can be expressed in C++:
Box Box::intersection( const Box & b ) const
{
Box res;
for ( int i = 0; i < V::elements; ++i )
{
res.min[i] = std::max( min[i], b.min[i] );
res.max[i] = std::min( max[i], b.max[i] );
}
return res;
}
where min and max are two corner points of a box. The "intersection" will be inverted (res.min[i] > res.max[i]) if two input boxes do not intersect actually.
Then the squared distance between two boxes is:
T Box::getDistanceSq( const Box & b ) const
{
auto ibox = intersection( b );
T distSq = 0;
for ( int i = 0; i < V::elements; ++i )
if ( ibox.min[i] > ibox.max[i] )
distSq += sqr( ibox.min[i] - ibox.max[i] );
return distSq;
}
The function returns zero if input boxes touch or intersect.
The code above was taken from MeshLib and it works for arbitrary n-dimensions cases (V::elements=n).

Related

How to create Bezier curves from B-Splines in Sympy?

I need to draw a smooth curve through some points, which I then want to show as an SVG path. So I create a B-Spline with scipy.interpolate, and can access some arrays that I suppose fully define it. Does someone know a reasonably simple way to create Bezier curves from these arrays?
import numpy as np
from scipy import interpolate
x = np.array([-1, 0, 2])
y = np.array([ 0, 2, 0])
x = np.r_[x, x[0]]
y = np.r_[y, y[0]]
tck, u = interpolate.splprep([x, y], s=0, per=True)
cx = tck[1][0]
cy = tck[1][1]
print( 'knots: ', list(tck[0]) )
print( 'coefficients x: ', list(cx) )
print( 'coefficients y: ', list(cy) )
print( 'degree: ', tck[2] )
print( 'parameter: ', list(u) )
The red points are the 3 initial points in x and y. The green points are the 6 coefficients in cx and cy. (Their values repeat after the 3rd, so each green point has two green index numbers.)
Return values tck and u are described scipy.interpolate.splprep documentation
knots: [-1.0, -0.722, -0.372, 0.0, 0.277, 0.627, 1.0, 1.277, 1.627, 2.0]
# 0 1 2 3 4 5
coefficients x: [ 3.719, -2.137, -0.053, 3.719, -2.137, -0.053]
coefficients y: [-0.752, -0.930, 3.336, -0.752, -0.930, 3.336]
degree: 3
parameter: [0.0, 0.277, 0.627, 1.0]
Not sure starting with a B-Spline makes sense: form a catmull-rom curve through the points (with the virtual "before first" and "after last" overlaid on real points) and then convert that to a bezier curve using a relatively trivial transform? E.g. given your points p0, p1, and p2, the first segment would be a catmull-rom curve {p2,p0,p1,p2} for the segment p1--p2, {p0,p1,p2,p0} will yield p2--p0, and {p1, p2, p0, p1} will yield p0--p1. Then you trivially convert those and now you have your SVG path.
As demonstrator, hit up https://editor.p5js.org/ and paste in the following code:
var points = [{x:150, y:100 },{x:50, y:300 },{x:300, y:300 }];
// add virtual points:
points = points.concat(points);
function setup() {
createCanvas(400, 400);
tension = createSlider(1, 200, 100);
}
function draw() {
background(220);
points.forEach(p => ellipse(p.x, p.y, 4));
for (let n=0; n<3; n++) {
let [c1, c2, c3, c4] = points.slice(n,n+4);
let t = 0.06 * tension.value();
bezier(
// on-curve start point
c2.x, c2.y,
// control point 1
c2.x + (c3.x - c1.x)/t,
c2.y + (c3.y - c1.y)/t,
// control point 2
c3.x - (c4.x - c2.x)/t,
c3.y - (c4.y - c2.y)/t,
// on-curve end point
c3.x, c3.y
);
}
}
Which will look like this:
Converting that to Python code should be an almost effortless exercise: there is barely any code for us to write =)
And, of course, now you're left with creating the SVG path, but that's hardly an issue: you know all the Bezier points now, so just start building your <path d=...> string while you iterate.
A B-spline curve is just a collection of Bezier curves joined together. Therefore, it is certainly possible to convert it back to multiple Bezier curves without any loss of shape fidelity. The algorithm involved is called "knot insertion" and there are different ways to do this with the two most famous algorithm being Boehm's algorithm and Oslo algorithm. You can refer this link for more details.
Here is an almost direct answer to your question (but for the non-periodic case):
import aggdraw
import numpy as np
import scipy.interpolate as si
from PIL import Image
# from https://stackoverflow.com/a/35007804/2849934
def scipy_bspline(cv, degree=3):
""" cv: Array of control vertices
degree: Curve degree
"""
count = cv.shape[0]
degree = np.clip(degree, 1, count-1)
kv = np.clip(np.arange(count+degree+1)-degree, 0, count-degree)
max_param = count - (degree * (1-periodic))
spline = si.BSpline(kv, cv, degree)
return spline, max_param
# based on https://math.stackexchange.com/a/421572/396192
def bspline_to_bezier(cv):
cv_len = cv.shape[0]
assert cv_len >= 4, "Provide at least 4 control vertices"
spline, max_param = scipy_bspline(cv, degree=3)
for i in range(1, max_param):
spline = si.insert(i, spline, 2)
return spline.c[:3 * max_param + 1]
def draw_bezier(d, bezier):
path = aggdraw.Path()
path.moveto(*bezier[0])
for i in range(1, len(bezier) - 1, 3):
v1, v2, v = bezier[i:i+3]
path.curveto(*v1, *v2, *v)
d.path(path, aggdraw.Pen("black", 2))
cv = np.array([[ 40., 148.], [ 40., 48.],
[244., 24.], [160., 120.],
[240., 144.], [210., 260.],
[110., 250.]])
im = Image.fromarray(np.ones((400, 400, 3), dtype=np.uint8) * 255)
bezier = bspline_to_bezier(cv)
d = aggdraw.Draw(im)
draw_bezier(d, bezier)
d.flush()
# show/save im
I didn't look much into the periodic case, but hopefully it's not too difficult.

Manually building Hexagonal Torus

I am interested in building a hexagonal Torus using a mesh of points?
I think I can start with a 2-d polygon, and then iterate 360 times (1 deg resolution) to build a complete solid.
Is this the best way to do this? What I'm really after is building wing profiles with variable cross section geometry over it's span.
In Your way You can do this with polyhedron(). Add an appropriate number of points per profile in defined order to a vector „points“, define faces by the indices of the points in a second vector „faces“ and set both vectors as parameter in polyhedron(), see documentation. You can control the quality of the surface by the number of points per profile and the distance between the profiles (sectors in torus).
Here an example code:
// parameter:
r1 = 20; // radius of torus
r2 = 4; // radius of polygon/ thickness of torus
s = 360; // sections per 360 deg
p = 6; // points on polygon
a = 30; // angle of the first point on Polygon
// points on cross-section
// angle = 360*i/p + startangle, x = r2*cos(angle), y = 0, z = r2*sin(angle)
function cs_point(i) = [r1 + r2*cos(360*i/p + a), 0, r2*sin(360*i/p + a)];
// returns to the index in the points - vector the section number and the number of the point on this section
function point_index(i) = [floor(i/p), i - p*floor(i/p)];
// returns the points x-, y-, z-coordinates by rotatating the corresponding point from crossection around the z-axis
function iterate_cs(i) = [cs[point_index(i)[1]][0]*cos(360*floor(i/p)/s), cs[point_index(i)[1]][0]*sin(360*floor(i/p)/s), cs[point_index(i)[1]][2]];
// for every point find neighbour points to build faces, ( + p: point on the next cross-section), points ordered clockwise
// to connect point on last section to corresponding points on first section
function item_add1(i) = i >= (s - 1)*p ? -(s)*p : 0;
// to connect last point on section to first points on the same and the next section
function item_add2(i) = i - p*floor(i/p) >= p-1 ? -p : 0;
// build faces
function find_neighbours1(i) = [i, i + 1 + item_add2(i), i + 1 + item_add2(i) + p + item_add1(i)];
function find_neighbours2(i) = [i, i + 1 + + item_add2(i) + p + item_add1(i), i + p + item_add1(i)];
cs = [for (i = [0:p-1]) cs_point(i)];
points = [for (i = [0:s*p - 1]) iterate_cs(i)];
faces1 = [for (i = [0:s*p - 1]) find_neighbours1(i)];
faces2 = [for (i = [0:s*p - 1]) find_neighbours2(i)];
faces = concat(faces1, faces2);
polyhedron(points = points, faces = faces);
here the result:
Since openscad 2015-03 faces can have more than 3 points, if all points of the face are on the same plane. So in this case faces could be build in one step too.
Are you building smth. like NACA airfoils? https://en.wikipedia.org/wiki/NACA_airfoil
There are a few OpenSCAD designs for those floating around, see e.g. https://www.thingiverse.com/thing:898554

Projection of circular region of interest onto rectangle [duplicate]

BOUNTY STATUS UPDATE:
I discovered how to map a linear lens, from destination coordinates to source coordinates.
How do you calculate the radial distance from the centre to go from fisheye to rectilinear?
1). I actually struggle to reverse it, and to map source coordinates to destination coordinates. What is the inverse, in code in the style of the converting functions I posted?
2). I also see that my undistortion is imperfect on some lenses - presumably those that are not strictly linear. What is the equivalent to-and-from source-and-destination coordinates for those lenses? Again, more code than just mathematical formulae please...
Question as originally stated:
I have some points that describe positions in a picture taken with a fisheye lens.
I want to convert these points to rectilinear coordinates. I want to undistort the image.
I've found this description of how to generate a fisheye effect, but not how to reverse it.
There's also a blog post that describes how to use tools to do it; these pictures are from that:
(1) : SOURCE Original photo link
Input : Original image with fish-eye distortion to fix.
(2) : DESTINATION Original photo link
Output : Corrected image (technically also with perspective correction, but that's a separate step).
How do you calculate the radial distance from the centre to go from fisheye to rectilinear?
My function stub looks like this:
Point correct_fisheye(const Point& p,const Size& img) {
// to polar
const Point centre = {img.width/2,img.height/2};
const Point rel = {p.x-centre.x,p.y-centre.y};
const double theta = atan2(rel.y,rel.x);
double R = sqrt((rel.x*rel.x)+(rel.y*rel.y));
// fisheye undistortion in here please
//... change R ...
// back to rectangular
const Point ret = Point(centre.x+R*cos(theta),centre.y+R*sin(theta));
fprintf(stderr,"(%d,%d) in (%d,%d) = %f,%f = (%d,%d)\n",p.x,p.y,img.width,img.height,theta,R,ret.x,ret.y);
return ret;
}
Alternatively, I could somehow convert the image from fisheye to rectilinear before finding the points, but I'm completely befuddled by the OpenCV documentation. Is there a straightforward way to do it in OpenCV, and does it perform well enough to do it to a live video feed?
The description you mention states that the projection by a pin-hole camera (one that does not introduce lens distortion) is modeled by
R_u = f*tan(theta)
and the projection by common fisheye lens cameras (that is, distorted) is modeled by
R_d = 2*f*sin(theta/2)
You already know R_d and theta and if you knew the camera's focal length (represented by f) then correcting the image would amount to computing R_u in terms of R_d and theta. In other words,
R_u = f*tan(2*asin(R_d/(2*f)))
is the formula you're looking for. Estimating the focal length f can be solved by calibrating the camera or other means such as letting the user provide feedback on how well the image is corrected or using knowledge from the original scene.
In order to solve the same problem using OpenCV, you would have to obtain the camera's intrinsic parameters and lens distortion coefficients. See, for example, Chapter 11 of Learning OpenCV (don't forget to check the correction). Then you can use a program such as this one (written with the Python bindings for OpenCV) in order to reverse lens distortion:
#!/usr/bin/python
# ./undistort 0_0000.jpg 1367.451167 1367.451167 0 0 -0.246065 0.193617 -0.002004 -0.002056
import sys
import cv
def main(argv):
if len(argv) < 10:
print 'Usage: %s input-file fx fy cx cy k1 k2 p1 p2 output-file' % argv[0]
sys.exit(-1)
src = argv[1]
fx, fy, cx, cy, k1, k2, p1, p2, output = argv[2:]
intrinsics = cv.CreateMat(3, 3, cv.CV_64FC1)
cv.Zero(intrinsics)
intrinsics[0, 0] = float(fx)
intrinsics[1, 1] = float(fy)
intrinsics[2, 2] = 1.0
intrinsics[0, 2] = float(cx)
intrinsics[1, 2] = float(cy)
dist_coeffs = cv.CreateMat(1, 4, cv.CV_64FC1)
cv.Zero(dist_coeffs)
dist_coeffs[0, 0] = float(k1)
dist_coeffs[0, 1] = float(k2)
dist_coeffs[0, 2] = float(p1)
dist_coeffs[0, 3] = float(p2)
src = cv.LoadImage(src)
dst = cv.CreateImage(cv.GetSize(src), src.depth, src.nChannels)
mapx = cv.CreateImage(cv.GetSize(src), cv.IPL_DEPTH_32F, 1)
mapy = cv.CreateImage(cv.GetSize(src), cv.IPL_DEPTH_32F, 1)
cv.InitUndistortMap(intrinsics, dist_coeffs, mapx, mapy)
cv.Remap(src, dst, mapx, mapy, cv.CV_INTER_LINEAR + cv.CV_WARP_FILL_OUTLIERS, cv.ScalarAll(0))
# cv.Undistort2(src, dst, intrinsics, dist_coeffs)
cv.SaveImage(output, dst)
if __name__ == '__main__':
main(sys.argv)
Also note that OpenCV uses a very different lens distortion model to the one in the web page you linked to.
(Original poster, providing an alternative)
The following function maps destination (rectilinear) coordinates to source (fisheye-distorted) coordinates. (I'd appreciate help in reversing it)
I got to this point through trial-and-error: I don't fundamentally grasp why this code is working, explanations and improved accuracy appreciated!
def dist(x,y):
return sqrt(x*x+y*y)
def correct_fisheye(src_size,dest_size,dx,dy,factor):
""" returns a tuple of source coordinates (sx,sy)
(note: values can be out of range)"""
# convert dx,dy to relative coordinates
rx, ry = dx-(dest_size[0]/2), dy-(dest_size[1]/2)
# calc theta
r = dist(rx,ry)/(dist(src_size[0],src_size[1])/factor)
if 0==r:
theta = 1.0
else:
theta = atan(r)/r
# back to absolute coordinates
sx, sy = (src_size[0]/2)+theta*rx, (src_size[1]/2)+theta*ry
# done
return (int(round(sx)),int(round(sy)))
When used with a factor of 3.0, it successfully undistorts the images used as examples (I made no attempt at quality interpolation):
Dead link
(And this is from the blog post, for comparison:)
If you think your formulas are exact, you can comput an exact formula with trig, like so:
Rin = 2 f sin(w/2) -> sin(w/2)= Rin/2f
Rout= f tan(w) -> tan(w)= Rout/f
(Rin/2f)^2 = [sin(w/2)]^2 = (1 - cos(w))/2 -> cos(w) = 1 - 2(Rin/2f)^2
(Rout/f)^2 = [tan(w)]^2 = 1/[cos(w)]^2 - 1
-> (Rout/f)^2 = 1/(1-2[Rin/2f]^2)^2 - 1
However, as #jmbr says, the actual camera distortion will depend on the lens and the zoom. Rather than rely on a fixed formula, you might want to try a polynomial expansion:
Rout = Rin*(1 + A*Rin^2 + B*Rin^4 + ...)
By tweaking first A, then higher-order coefficients, you can compute any reasonable local function (the form of the expansion takes advantage of the symmetry of the problem). In particular, it should be possible to compute initial coefficients to approximate the theoretical function above.
Also, for good results, you will need to use an interpolation filter to generate your corrected image. As long as the distortion is not too great, you can use the kind of filter you would use to rescale the image linearly without much problem.
Edit: as per your request, the equivalent scaling factor for the above formula:
(Rout/f)^2 = 1/(1-2[Rin/2f]^2)^2 - 1
-> Rout/f = [Rin/f] * sqrt(1-[Rin/f]^2/4)/(1-[Rin/f]^2/2)
If you plot the above formula alongside tan(Rin/f), you can see that they are very similar in shape. Basically, distortion from the tangent becomes severe before sin(w) becomes much different from w.
The inverse formula should be something like:
Rin/f = [Rout/f] / sqrt( sqrt(([Rout/f]^2+1) * (sqrt([Rout/f]^2+1) + 1) / 2 )
I blindly implemented the formulas from here, so I cannot guarantee it would do what you need.
Use auto_zoom to get the value for the zoom parameter.
def dist(x,y):
return sqrt(x*x+y*y)
def fisheye_to_rectilinear(src_size,dest_size,sx,sy,crop_factor,zoom):
""" returns a tuple of dest coordinates (dx,dy)
(note: values can be out of range)
crop_factor is ratio of sphere diameter to diagonal of the source image"""
# convert sx,sy to relative coordinates
rx, ry = sx-(src_size[0]/2), sy-(src_size[1]/2)
r = dist(rx,ry)
# focal distance = radius of the sphere
pi = 3.1415926535
f = dist(src_size[0],src_size[1])*factor/pi
# calc theta 1) linear mapping (older Nikon)
theta = r / f
# calc theta 2) nonlinear mapping
# theta = asin ( r / ( 2 * f ) ) * 2
# calc new radius
nr = tan(theta) * zoom
# back to absolute coordinates
dx, dy = (dest_size[0]/2)+rx/r*nr, (dest_size[1]/2)+ry/r*nr
# done
return (int(round(dx)),int(round(dy)))
def fisheye_auto_zoom(src_size,dest_size,crop_factor):
""" calculate zoom such that left edge of source image matches left edge of dest image """
# Try to see what happens with zoom=1
dx, dy = fisheye_to_rectilinear(src_size, dest_size, 0, src_size[1]/2, crop_factor, 1)
# Calculate zoom so the result is what we wanted
obtained_r = dest_size[0]/2 - dx
required_r = dest_size[0]/2
zoom = required_r / obtained_r
return zoom
I took what JMBR did and basically reversed it. He took the radius of the distorted image (Rd, that is, the distance in pixels from the center of the image) and found a formula for Ru, the radius of the undistorted image.
You want to go the other way. For each pixel in the undistorted (processed image), you want to know what the corresponding pixel is in the distorted image.
In other words, given (xu, yu) --> (xd, yd). You then replace each pixel in the undistorted image with its corresponding pixel from the distorted image.
Starting where JMBR did, I do the reverse, finding Rd as a function of Ru. I get:
Rd = f * sqrt(2) * sqrt( 1 - 1/sqrt(r^2 +1))
where f is the focal length in pixels (I'll explain later), and r = Ru/f.
The focal length for my camera was 2.5 mm. The size of each pixel on my CCD was 6 um square. f was therefore 2500/6 = 417 pixels. This can be found by trial and error.
Finding Rd allows you to find the corresponding pixel in the distorted image using polar coordinates.
The angle of each pixel from the center point is the same:
theta = arctan( (yu-yc)/(xu-xc) ) where xc, yc are the center points.
Then,
xd = Rd * cos(theta) + xc
yd = Rd * sin(theta) + yc
Make sure you know which quadrant you are in.
Here is the C# code I used
public class Analyzer
{
private ArrayList mFisheyeCorrect;
private int mFELimit = 1500;
private double mScaleFESize = 0.9;
public Analyzer()
{
//A lookup table so we don't have to calculate Rdistorted over and over
//The values will be multiplied by focal length in pixels to
//get the Rdistorted
mFisheyeCorrect = new ArrayList(mFELimit);
//i corresponds to Rundist/focalLengthInPixels * 1000 (to get integers)
for (int i = 0; i < mFELimit; i++)
{
double result = Math.Sqrt(1 - 1 / Math.Sqrt(1.0 + (double)i * i / 1000000.0)) * 1.4142136;
mFisheyeCorrect.Add(result);
}
}
public Bitmap RemoveFisheye(ref Bitmap aImage, double aFocalLinPixels)
{
Bitmap correctedImage = new Bitmap(aImage.Width, aImage.Height);
//The center points of the image
double xc = aImage.Width / 2.0;
double yc = aImage.Height / 2.0;
Boolean xpos, ypos;
//Move through the pixels in the corrected image;
//set to corresponding pixels in distorted image
for (int i = 0; i < correctedImage.Width; i++)
{
for (int j = 0; j < correctedImage.Height; j++)
{
//which quadrant are we in?
xpos = i > xc;
ypos = j > yc;
//Find the distance from the center
double xdif = i-xc;
double ydif = j-yc;
//The distance squared
double Rusquare = xdif * xdif + ydif * ydif;
//the angle from the center
double theta = Math.Atan2(ydif, xdif);
//find index for lookup table
int index = (int)(Math.Sqrt(Rusquare) / aFocalLinPixels * 1000);
if (index >= mFELimit) index = mFELimit - 1;
//calculated Rdistorted
double Rd = aFocalLinPixels * (double)mFisheyeCorrect[index]
/mScaleFESize;
//calculate x and y distances
double xdelta = Math.Abs(Rd*Math.Cos(theta));
double ydelta = Math.Abs(Rd * Math.Sin(theta));
//convert to pixel coordinates
int xd = (int)(xc + (xpos ? xdelta : -xdelta));
int yd = (int)(yc + (ypos ? ydelta : -ydelta));
xd = Math.Max(0, Math.Min(xd, aImage.Width-1));
yd = Math.Max(0, Math.Min(yd, aImage.Height-1));
//set the corrected pixel value from the distorted image
correctedImage.SetPixel(i, j, aImage.GetPixel(xd, yd));
}
}
return correctedImage;
}
}
I found this pdf file and I have proved that the maths are correct (except for the line vd = *xd**fv+v0 which should say vd = **yd**+fv+v0).
http://perception.inrialpes.fr/CAVA_Dataset/Site/files/Calibration_OpenCV.pdf
It does not use all of the latest co-efficients that OpenCV has available but I am sure that it could be adapted fairly easily.
double k1 = cameraIntrinsic.distortion[0];
double k2 = cameraIntrinsic.distortion[1];
double p1 = cameraIntrinsic.distortion[2];
double p2 = cameraIntrinsic.distortion[3];
double k3 = cameraIntrinsic.distortion[4];
double fu = cameraIntrinsic.focalLength[0];
double fv = cameraIntrinsic.focalLength[1];
double u0 = cameraIntrinsic.principalPoint[0];
double v0 = cameraIntrinsic.principalPoint[1];
double u, v;
u = thisPoint->x; // the undistorted point
v = thisPoint->y;
double x = ( u - u0 )/fu;
double y = ( v - v0 )/fv;
double r2 = (x*x) + (y*y);
double r4 = r2*r2;
double cDist = 1 + (k1*r2) + (k2*r4);
double xr = x*cDist;
double yr = y*cDist;
double a1 = 2*x*y;
double a2 = r2 + (2*(x*x));
double a3 = r2 + (2*(y*y));
double dx = (a1*p1) + (a2*p2);
double dy = (a3*p1) + (a1*p2);
double xd = xr + dx;
double yd = yr + dy;
double ud = (xd*fu) + u0;
double vd = (yd*fv) + v0;
thisPoint->x = ud; // the distorted point
thisPoint->y = vd;
This can be solved as an optimization problem. Simply draw on curves in images that are supposed to be straight lines. Store the contour points for each of those curves. Now we can solve the fish eye matrix as a minimization problem. Minimize the curve in points and that will give us a fisheye matrix. It works.
It can be done manually by adjusting the fish eye matrix using trackbars! Here is a fish eye GUI code using OpenCV for manual calibration.

hough transform error in matlab and openCV?

I have been using the Hough transform in my application both using Matlab and OpenCV/labview and found that for some images, the hough transform gave an obviously wrong line fit (consistently)
Here are the test and overlayed images. The angle seem right, but the rho is off.
On the image below, you will see the top image tries to fit a line to the left side of the original image and the bottom image fits a line to the right side of the image.
In Matlab, I call the Hough function through
[H1D,theta1D,rho1D] = hough(img_1D_dilate,'ThetaResolution',0.2);
in C++, i trimmed the OpenCV HoughLines function so I end up with only the part we are filling the accumulator. Note that because my theta resolution is 0.2, I have 900 angles to analyze. The tabSin and tabCos are defined prior to the function so that they are just a sin and cos of the angle.
Note that these routines generally work well, but just for specific cases it performs the way I have shown.
double start_angle = 60.0;
double end_angle = 120.0;
double num_theta = 180;
int start_ang = num_theta * start_angle/180;
int end_ang = num_theta * end_angle/180;
int i,j,n,index;
for (i = 0;i<numrows;i++)
{
for (j = 0;j<numcols;j++)
{
if (img[i*numcols + j] == 100)
{
for (n = 0;n<180;n++)
{
index = cvRound((j*tabCos[n] + i * tabSin[n])) + (numrho-1)/2;
accum[(n+1) * (numrho+2) + index+1]++;
}
}
}
}
TabCos and tabSin are defined in Labview with this code
int32 i;
float64 theta_prec;
float64 tabSin[180];
float64 tabCos[180];
theta_prec = 1/180*3.14159;
for (i = 0;i<180;i++)
{
tabSin[i] = sin(itheta_prec);
tabCos[i] = cos(itheta_prec);
}
any suggestions would be greatly appreciated
I guess i'll put down the answer to this problem.
I was converting the rho and theta into m and b, then computing the values of x and y from the m and b. I believe this may have caused some precision error somewhere.
this error was fixed by obtaining x and y directly from rho and theta rather than going through m and b.
the function is
y = -cos(theta)/sin(theta)*x + rho/sin(theta);

Avg distance between points in a cluster

Sounds like I got the concept but cant seems to get the implementation correct. eI have a cluster (an ArrayList) with multiple points, and I want to calculate avg distance. Ex: Points in cluster (A, B, C, D, E, F, ... , n), Distance A-B, Distance A-C, Distance A-D, ... Distance A,N, Distance (B,C) Distance (B,D)... Distance (B,N)...
Thanks in advance.
You don't want to double count any segment, so your algorithm should be a double for loop. The outer loop goes from A to M (you don't need to check N, because there'll be nothing left for it to connect to), each time looping from curPoint to N, calculating each distance. You add all the distances, and divide by the number of points (n-1)^2/2. Should be pretty simple.
There aren't any standard algorithms for improving on this that I'm aware of, and this isn't a widely studied problem. I'd guess that you could get a pretty reasonable estimate (if an estimate is useful) by sampling distances from each point to a handful of others. But that's a guess.
(After seeing your code example) Here's another try:
public double avgDistanceInCluster() {
double totDistance = 0.0;
for (int i = 0; i < bigCluster.length - 1; i++) {
for (int j = i+1; j < bigCluster.length; j++) {
totDistance += distance(bigCluster[i], bigCluster[j]);
}
}
return totDistance / (bigCluster.length * (bigCluster.length - 1)) / 2;
}
Notice that the limit for the first loop is different.
Distance between two points is probably sqrt((x1 - x2)^2 + (y1 -y2)^2).
THanks for all the help, Sometimes after explaining the question on forum answer just popup to your mind. This is what I end up doing.
I have a cluster of point, and I need to calculate the avg distance of points (pairs) in the cluster. So, this is what I did. I am sure someone will come with a better answer if so please drop a note. Thanks in advance.
/**
* Calculate avg distance between points in cluster
* #return
*/
public double avgDistanceInCluster() {
double avgDistance = 0.0;
Stack<Double> holder = new Stack<Double>();
for (int i = 0; i < cluster.size(); i++) {
System.out.println(cluster.get(i));
for (int j = i+1; j < cluster.size(); j++) {
avgDistance = (cluster.get(i) + cluster.get(j))/2;
holder.push(avgDistance);
}
}
Iterator<Double> iter = holder.iterator();
double avgClusterDist = 0;
while (iter.hasNext()) {
avgClusterDist =+ holder.pop();
System.out.println(avgClusterDist);
}
return avgClusterDist/cluster.size();
}