Mongo Container Not Retrieving Persisted Data - mongodb

I'm running a mongo container with the command below:
docker run -d -p 27017:27017 -v /home/ayuba/Royal/RoyalRide/uploads:/data/db --name mongod mongo
This works fine and the data is persisted in the directory (/home/ayuba/Royal/RoyalRide/uploads) as seen on the image here: https://i.stack.imgur.com/QVa4X.png"
However, whenever i restart my ubuntu server, and run the mongo container again using thesame volume, it does not retrieve any of the previous data from the volume.

Related

On Windows, where docker is running on oracle virtualBox, is there an option to persist data of mongodb using volume?

On Windows, where docker is running on oracle virtualBox, is there an option to persist data of mongodb using volume?
I read on official documentation of docker hub that its not possible.
for MySQL, its possible and I am able to use its default implementation (where I cannot trace the volume, still its ok)
Of course it's possible.
I'm assuming you're using Docker Toolbox. If so then directory C:\Users is mounted inside the boo2docker VM as /c/Users. Per MongoDB documentation that means the command below won't work:
docker run --name some-mongo -v /c/Users/your_user_name/MongoDB_Data:/data/db -d mongo
However, there is nothing stopping you from mounting a directory that exists solely inside the VM, like this:
docker run --name some-mongo -v /src/mongodb/data:/data/db -d mongo
Furthermore, MongoDB Docker image documentation says nothing about named volumes, so the following should also work:
docker volume create mongodb_data
docker run --name some-mongo -v mongodb_data:/data/db -d mongo

A backup mechanism to make docker volume persistent or available to localsystem or a mount point

New to docker and don't fully understand the workaround. I am trying to create a docker container to deploy a MongoDB instance. Since MongoDB requires a dbpath for setup, I am providing the dbpath as a volume. The problem I face is once the container is deleted I also lose the volume.
Now, how do I explicitly define the volume to localsystem or to a mount point.
docker run -d -p 2000:27017 -v /data/db --name mongoContainer mongo:4.2
If I am not wrong all the MongoDB collections created are being stored inside dbpath /data/db and once the container is deleted I lose the collections as well.
Here you define your local volume only.
docker run -d -p 2000:27017 -v /data/db --name mongoContainer mongo:4.2
You MUST map your local directory to docker image folder
docker run -d -p 2000:27017 -v /data/db:/inside/mongo_image/path --name mongoContainer mongo:4.2
Always -v /your/local/directory:/docker/directory
/inside/mongo_image/path this should be the right path where mongodb will look for files.

Initialize data on dockerized mongo

I'm running a dockerized mongo container.
I'd like to create a mongo image with some initialized data.
Any ideas?
A more self-contained approach:
create javascript files that initialize your database
create a derived MongoDB docker image that contains these files
There are many answers that use disposable containers or create volumes and link them, but this seems overly complicated. If you take a look at the mongo docker image's docker-entrypoint.sh, you see that line 206 executes /docker-entrypoint-initdb.d/*.js files on initialization using a syntax: mongo <db> <js-file>. If you create a derived MongoDB docker image that contains your seed data, you can:
have a single docker run command that stands up a mongo with seed data
have data is persisted through container stops and starts
reset that data with docker stop, rm, and run commands
easily deploy with runtime schedulers like k8s, mesos, swarm, rancher
This approach is especially well suited to:
POCs that just need some realistic data for display
CI/CD pipelines that need consistent data for black box testing
example deployments for product demos (sales engineers, product owners)
How to:
Create and test your initialization scripts (grooming data as appropriate)
Create a Dockerfile for your derived image that copies your init scripts
FROM mongo:3.4
COPY seed-data.js /docker-entrypoint-initdb.d/
Build your docker image
docker build -t mongo-sample-data:3.4 .
Optionally, push your image to a docker registry for others to use
Run your docker image
docker run \
--name mongo-sample-data \
-p 27017:27017 \
--restart=always \
-e MONGO_INITDB_DATABASE=application \
-d mongo-sample-data:3.4
By default, docker-entrypoint.sh will apply your scripts to the test db; the above run command env var MONGO_INITDB_DATABASE=application will apply these scripts to the application db instead. Alternatively, you could create and switch to different dbs in the js file.
I have a github repo that does just this - here are the relevant files.
with the latest release of mongo docker , something like this works for me.
FROM mongo
COPY dump /home/dump
COPY mongo_restore.sh /docker-entrypoint-initdb.d/
the mongo restore script looks like this.
#!/bin/bash
# Restore from dump
mongorestore --drop --gzip --db "<RESTORE_DB_NAME>" /home/dump
and you could build the image normally.
docker build -t <TAG> .
First create a docker volume
docker volume create --name mongostore
then create your mongo container
docker run -d --name mongo -v mongostore:/data/db mongo:latest
The -v switch here is responsible for mounting the volume mongostore at the /data/db location, which is where mongo saves its data. The volume is persistent (on the host). Even with no containers running you will see your mongostore volume listed by
docker volume ls
You can kill the container and create a new one (same line as above) and the new mongo container will pick up the state of the previous container.
Initializing the volume
Mongo initializes a new database if none is present. This is responsible for creating the initial data in the mongostore. Let's say that you want to create a brand new environment using a pre-seeded database. The problem becomes how to transfer data from your local environment (for instance) to the volume before creating the mongo container. I'll list two cases.
Local environment
You're using either Docker for Mac/Windows or Docker Toolbox. In this case you can easily mount a local drive to a temporary container to initialize the volume. Eg:
docker run --rm -v /Users/myname/work/mongodb:/incoming \
-v mongostore:/data alpine:3.4 cp -rp /incoming/* /data
This doesn't work for cloud storage. In that case you need to copy the files.
Remote environment (AWS, GCP, Azure, ...)
It's a good idea to tar/compress things up to speed the upload.
tar czf mongodata.tar.gz /Users/myname/work/mongodb
Then create a temporary container to untar and copy the files to the mongostore. the tail -f /dev/null just makes sure that the container doesn't exit.
docker run -d --name temp -v mongostore:/data alpine:3.4 tail -f /dev/null
Copy files to it
docker cp mongodata.tar.gz temp:.
Untar and move to the volume
docker exec temp tar xzf mongodata.tar.gz && cp -rp mongodb/* /data
Cleanup
docker rm temp
You could also copy the files to the remote host and mounting from there but I tend to avoid interacting with the remote host at all.
Disclaimer. I'm writing this from memory (no testing).
Here is how its done with docker-compose. I use an older image of mongo but the docker-entrypoint.sh accepts *.js and *.sh files for all versions of the image.
docker-compose.yaml
version: '3'
services:
mongo:
container_name: mongo
image: mongo:3.2.12
ports:
- "27017:27017"
volumes:
- mongo-data:/data/db:cached
- ./deploy/local/mongo_fixtures /fixtures
- ./deploy/local/mongo_import.sh:/docker-entrypoint-initdb.d/mongo_import.sh
volumes:
mongo-data:
driver: local
mongo_import.sh:
#!/bin/bash
# Import from fixtures
mongoimport --db wcm-local --collection clients --file /fixtures/properties.json && \
mongoimport --db wcm-local --collection configs --file /fixtures/configs.json
And my monogo_fixtures json files are the product of monogoexport which have the following format:
{"_id":"some_id","field":"value"}
{"_id":"another_id","field":"value"}
This should help those using this without a custom Dockefile, just using the image straight away with the right entrypoint setup right in your docker-compose file. Cheers!
I've found a way that is somehow easier for me.
Say you have a database in a docker container on your server, and you want to back it up, here’s what you could do.
What might differ from your setup to mine is the name of your mongo docker container [mongodb] (default when using elastic_spence). So make sure you start your container first with --name mongodb to match the following steps:
$ docker run \
--rm \
--link mongodb:mongo \
-v /root:/backup \
mongo \
bash -c ‘mongodump --out /backup --host $MONGO_PORT_27017_TCP_ADDR’
And to restore the database from a dump.
$ docker run \
--rm \
--link mongodb:mongo \
-v /root:/backup \
mongo \
bash -c ‘mongorestore /backup --host $MONGO_PORT_27017_TCP_ADDR’
If you need to download the dump from to your server you can use scp:
$ scp -r root#IP:/root/backup ./backup
Or upload it:
$ scp -r ./backup root#IP:/root/backup
P.S: Original source by Tim Brandin available at https://blog.studiointeract.com/mongodump-and-mongorestore-for-mongodb-in-a-docker-container-8ad0eb747c62
Thank you!

Why isn't docker commit saving data in my mongo database container?

I have a docker-compose file that links a seed script with a mongo image from docker's public registry. I can populate the database with:
docker-compose up
docker-compose run seed_script
I can connect to this mongo container with the mongo cli from my host system and verify that the seed script is working and there's data in the database.
When I'm done seeding, I can see the mongo container ID with docker ps. I stop the container by pressing Ctrlc in the docker-compose terminal and commit the changes to the mongo container:
docker commit <mongo container ID> mongo-seeded-data
However, when I run that container individually, it's empty:
docker run -p 27017:27017 mongo-seeded-data
mongo
> show dbs
local 0.000GB
If I bring up the docker-compose containers again and use my host mongo client, I can see the data:
docker-compose up
mongo
> show dbs
seeded_db 0.018GB
local 0.000GB
I committed the container with the data in it. Why is it not there when I bring up the container? What is docker-compose doing differently than docker run?
Because there is a VOLUME defined in it.
docker commit saves the content of the overlay fs as a new image, but VOLUMES transcend the overlay fs. That's why it doesn't get saved.
I had the same problem in the past and resolved patching the mongo image by using a different data directory, so that the data would get written inside the container instead of the VOLUME.

docker backup and restore mongodb

Create data only container:
docker create -v /mongodb_data --name mongodb_data mongo
Create monogdb container:
docker run --volumes-from mongodb_data --name mongo_db --restart always -d mongo
Then to use mongodb in my own container I use the link command:
--link mongo_db:mongo
So everything works fine. Now I want to backup the mongodb according to the docs: http://docs.docker.com/userguide/dockervolumes/#backup-restore-or-migrate-data-volumes and this command:
docker run --volumes-from mongodb_data -v $(pwd):/backup busybox tar cvf /backup/backup.tar /mongodb_data
However the created tar file has just an empty /mongodb_data folder. The folder contains not a single file.
Any ideas whats wrong? I am using docker 1.7 on ubuntu 14.04 LTS.
The problem is your data only container. You make your volume with path /mongodb_data which doesn't store any mongo db data. By default, the mongo db storage path is /data/db (according to this #Where to Store Data Section)
As the result, your mongodb data is not saved in your data only container. So here is a workaround:
copy /data/db to /mongodb_data in your mongodb container docker exec -it mongo_db bash then cp -r /data/db/* /mongodb_data/
make a backup by following the doc you mentioned
build a new data only container and load the backup
remove current mongo_db container and recreate a new one with the new data only container
OR, you can modify your mongodb config, to change the default directory to /mongodb_data once you copied all data from /data/db to /mongodb_data. You may find this useful Changing MongoDB data store directory
You can use this image that provides docker container for many jobs ( import, export , dump )