Error deploying a custom image with the crunchydata postgres operator - postgresql

I've created a custom image based on timescaledb where I've installed wal2json and I'm trying to deploy it on my kubernetes cluster using the crunchydata-postgres-operator. I've managed to set everything up except credentials to access the database.
I'm trying to create the pgo cluster with the following command:
pgo create cluster my-db --ccp-image-prefix="eu.gcr.io/<project-id>" --ccp-image="timescale-custom" -c latest -d <dbname> -u <username> --password="<my_password>"
This command executes successfully, but the database deployment enters a CrashLoopBackOff because of the following error:
Error: Database is uninitialized and superuser password is not specified.
You must specify POSTGRES_PASSWORD to a non-empty value for the
superuser. For example, "-e POSTGRES_PASSWORD=password" on "docker run".
You may also use "POSTGRES_HOST_AUTH_METHOD=trust" to allow all
connections without a password. This is *not* recommended.
See PostgreSQL documentation about "trust":
https://www.postgresql.org/docs/current/auth-trust.html
Seeing this I tried to set the POSTGRES_PASSWORD and POSTGRES_USER in the Dockerfile, but this does not alleviate the problem?
I know that usually these environment variables are set in the k8s deployment.yaml or in docker-compose.yml. But even though the postgres operator has some default credentials they don't seem to be applied to the container?
Dockerfile:
FROM postgres:12 AS build
ENV VERSION 1_0
RUN buildDeps="curl build-essential ca-certificates git pkg-config glib2.0 postgresql-server-dev-$PG_MAJOR" \
&& apt-get update \
&& apt-get install -y --no-install-recommends ${buildDeps} \
&& echo "deb http://apt.postgresql.org/pub/repos/apt/ stretch-pgdg main" > /etc/apt/sources.list.d/pgdg.list \
&& curl https://www.postgresql.org/media/keys/ACCC4CF8.asc | apt-key add - \
&& apt-get update \
&& apt-get install -y --no-install-recommends libc++1 postgresql-server-dev-$PG_MAJOR \
&& mkdir -p /tmp/build \
&& curl -o /tmp/build/${VERSIONN}.tar.gz -SL "https://github.com/eulerto/wal2json/archive/wal2json_${VERSION}.tar.gz" \
&& cd /tmp/build/ \
&& tar -xzf /tmp/build/${VERSIONN}.tar.gz -C /tmp/build/ \
&& cd /tmp/build/wal2json-wal2json_${VERSION} \
&& make && make install \
&& mkdir /outputs \
&& cp wal2json.so /outputs/ \
&& cd / \
&& rm -rf /tmp/build \
&& apt-get remove -y --purge ${buildDeps} \
&& apt-get autoremove -y --purge \
&& rm -rf /var/lib/apt/lists/
FROM timescale/timescaledb:1.7.4-pg12
COPY --from=build /outputs/wal2json.so /usr/local/lib/postgresql/
RUN echo "host replication all 127.0.0.1/32 trust" >> /var/lib/postgresql/data/pg_hba.conf
ENV POSTGRES_USER=<username> POSTGRES_PASSWORD=<password>
Edit:
After running the same command with the --debug flag I've received this output:
DEBU[0000] debug flag is set to true
DEBU[0000] in initConfig with url=https://127.0.0.1:8443
DEBU[0000] using PGO_NAMESPACE env var pgo
DEBU[0000] GetSessionCredentials called
DEBU[0000] PGOUSER environment variable is being used at /home/mycloud/.pgo/pgo/pgouser
DEBU[0000] pgouser file found at /home/mycloud/.pgo/pgo/pgouser contains admin:examplepassword
DEBU[0000] [admin examplepassword]
DEBU[0000] username=[admin] password=[examplepassword]
DEBU[0000] setting up httpclient with TLS
DEBU[0000] GetTLSTransport called
DEBU[0000] create cluster called
DEBU[0000] IsValidForResourceName: my-db
DEBU[0000] createCluster called...[https://127.0.0.1:8443/clusters]
DEBU[0000] &{200 OK 200 HTTP/1.1 1 1 map[Content-Length:[193] Content-Type:[application/json] Date:[Sat, 09 Jan 2021 19:56:05 GMT] Www-Authenticate:[Basic realm="Restricted"]] 0xc00017c080 193 [] false false map[]

Related

kubectl not found error in jenkins pipeline

stage('Deploy Test chart') {
steps{
container('ubuntu-kubectl-helm') {
script {
kubeconfig(credentialsId: 'kubeconfig-test'){
sh "which kubectl"
sh "kubectl config view"
sh "kubectl get nodes"
sh "kubectl get pods -n jenkins-new"
sh "kubectl get pods -n test"
}
}
}
}
}
We have 3 containers to run the whole pipeline. and we create an Ubuntu container to run Kubernetes on it(we have install kubectl on it). when we run this step as a part of the whole pipe line. It gives us errors.
ERROR: Failed to run "kubectl version". Returned status code 127.
stdout:
sh: 47: kubectl: not found
But when we run this step separately as a pipeline, then the pipeline is working and we get the results.Now we are stuck and not able to figure out how to proceed further.
We also checked the environment path and checked if it was running on the Ubuntu container or not.
Inside Jenkins you need to install kubectl. Same if you want to use docker in your pipeline.
Here my Dockerfile which does it.
FROM jenkins/jenkins
ARG HOST_UID=1004
ARG HOST_GID=999
USER root
RUN apt-get -y update && \
apt-get -y install apt-transport-https ca-certificates curl gnupg-agent software-properties-common && \
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | apt-key add - && \
add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/$(. /etc/os-release; echo "$ID") $(lsb_release -cs) stable" && \
apt-get update && \
apt-get -y install docker-ce docker-ce-cli containerd.io
RUN curl -L "https://github.com/docker/compose/releases/download/1.26.2/docker-compose-$(uname -s)-$(uname -m)" -o /usr/local/bin/docker-compose \
&& chmod +x /usr/local/bin/docker-compose \
&& ln -s /usr/local/bin/docker-compose /usr/bin/docker-compose \
&& curl -s https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add -
RUN echo "deb https://apt.kubernetes.io/ kubernetes-xenial main" | tee /etc/apt/sources.list.d/kubernetes.list \
&& apt-get -y update \
&& apt install -y kubectl
RUN usermod -u $HOST_UID jenkins
RUN groupmod -g $HOST_GID docker
RUN usermod -aG docker jenkins
USER jenkins

mongodb container start failed with error:IllegalOperation: Attempted to create a lock file on a read-only directory: /data/db, terminating

mongodb docker container start failed with errors: IllegalOperation: Attempted to create a lock file on a read-only directory: /data/db, terminating
I use offical mongodb Dockerfile to build the container, and use docker-compose to start it.
Here is my Dockerfile:
FROM ubuntu:bionic
# add our user and group first to make sure their IDs get assigned consistently, regardless of whatever dependencies get added
RUN groupadd -r mongodb && useradd -r -g mongodb mongodb
RUN echo "deb http://mirrors.tuna.tsinghua.edu.cn/ubuntu/ bionic main restricted universe multiverse" > /etc/apt/sources.list \
&& echo "deb http://mirrors.tuna.tsinghua.edu.cn/ubuntu/ bionic-updates main restricted universe multiverse" >> /etc/apt/sources.list \
&& echo "deb http://mirrors.tuna.tsinghua.edu.cn/ubuntu/ bionic-backports main restricted universe multiverse" >> /etc/apt/sources.list \
&& echo "deb http://mirrors.tuna.tsinghua.edu.cn/ubuntu/ bionic-security main restricted universe multiverse" >> /etc/apt/sources.list
RUN export all_proxy=http:192.168.1.177:1080
RUN set -eux; \
apt-get update; \
apt-get install -y --no-install-recommends \
ca-certificates \
jq \
numactl \
; \
if ! command -v ps > /dev/null; then \
apt-get install -y --no-install-recommends procps; \
fi; \
rm -rf /var/lib/apt/lists/*
# grab gosu for easy step-down from root (https://github.com/tianon/gosu/releases)
ENV GOSU_VERSION 1.11
# grab "js-yaml" for parsing mongod's YAML config files (https://github.com/nodeca/js-yaml/releases)
ENV JSYAML_VERSION 3.13.0
RUN mkdir ~/.gnupg && echo "disable-ipv6" >> ~/.gnupg/dirmngr.conf
RUN set -ex; \
\
apt-get update; \
apt-get install -y --no-install-recommends \
wget \
; \
if ! command -v gpg > /dev/null; then \
apt-get install -y --no-install-recommends gnupg dirmngr; \
fi; \
rm -rf /var/lib/apt/lists/*; \
\
dpkgArch="$(dpkg --print-architecture | awk -F- '{ print $NF }')"; \
wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch"; \
wget -O /usr/local/bin/gosu.asc "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch.asc"; \
export GNUPGHOME="$(mktemp -d)"; \
gpg --batch --keyserver ha.pool.sks-keyservers.net --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4; \
gpg --batch --verify /usr/local/bin/gosu.asc /usr/local/bin/gosu; \
command -v gpgconf && gpgconf --kill all || :; \
rm -r "$GNUPGHOME" /usr/local/bin/gosu.asc; \
chmod +x /usr/local/bin/gosu; \
gosu --version; \
gosu nobody true; \
\
wget -O /js-yaml.js "https://github.com/nodeca/js-yaml/raw/${JSYAML_VERSION}/dist/js-yaml.js"; \
# TODO some sort of download verification here
\
apt-get purge -y --auto-remove wget
RUN mkdir /docker-entrypoint-initdb.d
ENV GPG_KEYS E162F504A20CDF15827F718D4B7C549A058F8B6B
RUN set -ex; \
export GNUPGHOME="$(mktemp -d)"; \
for key in $GPG_KEYS; do \
gpg --batch --keyserver ha.pool.sks-keyservers.net --recv-keys "$key"; \
done; \
gpg --batch --export $GPG_KEYS > /etc/apt/trusted.gpg.d/mongodb.gpg; \
command -v gpgconf && gpgconf --kill all || :; \
rm -r "$GNUPGHOME"; \
apt-key list
# Allow build-time overrides (eg. to build image with MongoDB Enterprise version)
# Options for MONGO_PACKAGE: mongodb-org OR mongodb-enterprise
# Options for MONGO_REPO: repo.mongodb.org OR repo.mongodb.com
# Example: docker build --build-arg MONGO_PACKAGE=mongodb-enterprise --build-arg MONGO_REPO=repo.mongodb.com .
ARG MONGO_PACKAGE=mongodb-org-unstable
ARG MONGO_REPO=repo.mongodb.org
ENV MONGO_PACKAGE=${MONGO_PACKAGE} MONGO_REPO=${MONGO_REPO}
ENV MONGO_MAJOR 4.1
ENV MONGO_VERSION 4.1.10
# bashbrew-architectures:amd64 arm64v8 s390x
RUN echo "deb http://$MONGO_REPO/apt/ubuntu bionic/${MONGO_PACKAGE%-unstable}/$MONGO_MAJOR multiverse" | tee "/etc/apt/sources.list.d/${MONGO_PACKAGE%-unstable}.list"
RUN set -x \
&& apt-get update \
&& apt-get install -y \
${MONGO_PACKAGE}=$MONGO_VERSION \
${MONGO_PACKAGE}-server=$MONGO_VERSION \
${MONGO_PACKAGE}-shell=$MONGO_VERSION \
${MONGO_PACKAGE}-mongos=$MONGO_VERSION \
${MONGO_PACKAGE}-tools=$MONGO_VERSION \
&& rm -rf /var/lib/apt/lists/* \
&& rm -rf /var/lib/mongodb \
&& mv /etc/mongod.conf /etc/mongod.conf.orig
RUN mkdir -p /data/db /data/configdb \
&& chown -R mongodb:mongodb /data/db /data/configdb \
&& chmod g+w -R /data/db \
&& chmod g+w -R /data/configdb
VOLUME /data/db /data/configdb
COPY docker-entrypoint.sh /usr/local/bin/
ENTRYPOINT ["docker-entrypoint.sh"]
EXPOSE 27017
CMD ["mongod"]
and docker-compose below:
mongodb:
build: ./dockerfiles/mongodb
volumes:
- ./data/mongodb/db:/data/db
- ./data/mongodb/configdb:/data/configdb
ports:
- 7017:27017
environment:
- MONGO_INITDB_ROOT_USERNAME=super
- MONGO_INITDB_ROOT_PASSWORD=123456
restart: always
I expect the container start successfully. But i got failure with :IllegalOperation: Attempted to create a lock file on a read-only directory: /data/db, terminating
If i remove volumes sections, It works!
The host is ubuntu18.04, and /data is writeable!
I had solved my problem le 老铁!
AS i use vmware to start an Ubuntu server, and shared a folder with windows 7. The container volume on the shared folder.
check the inspect information of the mongodb container.
"Mounts": [
{
"Type": "bind",
"Source": "/mnt/hgfs/ubuntu/dockers/data/mongodb/configdb",
"Destination": "/data/configdb",
"Mode": "rw",
"RW": true,
"Propagation": "rprivate"
},
{
"Type": "bind",
"Source": "/mnt/hgfs/ubuntu/dockers/data/mongodb/db",
"Destination": "/data/db",
"Mode": "rw",
"RW": true,
"Propagation": "rprivate"
}
],
the Source contains string "/mnt/hgfs/ubuntu" tell us: It shared folder!

How to install pgsql driver on docker php:7.1-apache?

I have an API Platform project with a postgresql DB and I can't find how to enable pdo pgsql driver with docker..
Here is my docker file :
FROM php:7.1-apache
# PHP extensions
ENV APCU_VERSION 5.1.7
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
libicu-dev \
zlib1g-dev \
libpq-dev \
libzip-dev \
libpcre3-dev \
ssmtp vim git cron zip \
&& docker-php-ext-install \
pdo \
pdo_pgsql \
zip
# Apache config
RUN a2enmod rewrite
ADD docker/apache/vhost.conf /etc/apache2/sites-available/000-default.conf
# Add the application
ADD . /app
WORKDIR /app
# Install composer
RUN ./docker/composer.sh \
&& mv composer.phar /usr/bin/composer \
&& composer global require "hirak/prestissimo:^0.3"
RUN usermod -u 1000 www-data
#RUN chown -R www-data:www-data /app/var/cache /app/var/logs /app/var/sessions
CMD ["/app/docker/start.sh"]
and here my docker-composer.yml file
web:
container_name: web-api-front
build: .
environment:
SYMFONY_ENV: dev
volumes:
- .:/app
ports:
- 8084:80
psql:
container_name: psql-api-front
image: postgres
environment:
POSTGRES_PASSWORD: ''
POSTGRES_USER: dbuser
POSTGRES_DB: dbname
ports:
- "5433:5432"
volumes:
- ./docker/sql:/var/sql
I've tryed a lot of websites but I still can't find a way to enable pgsql..
When I do
var_dump(PDO::getAvailableDrivers());
I only have
array(2) { [0]=> string(6) "sqlite" [1]=> string(5) "mysql" }
Also, when I run
docker-compose up
I have this in my log, i'm not sure about what this mean
psql-api-front | LOG: database system was shut down at 2017-08-01 08:18:57 UTC
psql-api-front | LOG: MultiXact member wraparound protections are now enabled
psql-api-front | LOG: database system is ready to accept connections
psql-api-front | LOG: autovacuum launcher started
What am I doing wrong ?
That means that PSQL is working properly but in order to apache to work properly you will need to add the psql libraries and drivers :
FROM php:7.1-apache
# PHP extensions
ENV APCU_VERSION 5.1.7
RUN buildDeps=" \
libicu-dev \
zlib1g-dev \
libsqlite3-dev \
libpq-dev \
" \
&& apt-get update \
&& apt-get install -y --no-install-recommends \
$buildDeps \
libicu52 \
zlib1g \
sqlite3 \
git \
php5-pgsql \
&& rm -rf /var/lib/apt/lists/* \
&& docker-php-ext-install \
intl \
mbstring \
pdo_mysql \
pdo_pgsql \
pdo \
pgsql \
zip \
pdo_sqlite \
&& apt-get purge -y --auto-remove $buildDeps
RUN pecl install \
apcu-$APCU_VERSION \
xdebug \
&& docker-php-ext-enable xdebug \
&& docker-php-ext-enable --ini-name 05-opcache.ini \
opcache \
&& docker-php-ext-enable --ini-name 20-apcu.ini \
apcu
ARG SYMFONY_ENV=dev
ENV SYMFONY_ENV=dev
RUN if [ "$SYMFONY_ENV" -ne "dev" ]; then \
sed -i '1 a xdebug.remote_enable=1' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini && \
sed -i '1 a xdebug.remote_handler=dbgp' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini && \
sed -i '1 a xdebug.remote_autostart=0' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini && \
sed -i '1 a xdebug.remote_connect_back=1 ' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini && \
sed -i '1 a xdebug.remote_port=9001' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini && \
sed -i '1 a xdebug.remote_log=/var/log/xdebug_remote.log' /usr/local/etc/php/conf.d/docker-php-ext-xdebug.ini; \
fi;
# Apache config
RUN a2enmod rewrite
ADD docker/apache/vhost.conf /etc/apache2/sites-available/000-default.conf
# PHP config
ADD docker/php/php.ini /usr/local/etc/php/php.ini
# Add the application
ADD . /app
WORKDIR /app
RUN chmod +x /app/docker/composer.sh
# Install composer
RUN /app/docker/composer.sh \
&& mv composer.phar /usr/bin/composer \
&& composer global require "hirak/prestissimo:^0.3"
ENV PATH="$PATH:$HOME/.composer/vendor/bin"
# to define
ARG INSTALL_DEP=true
RUN if [ -n "$INSTALL_DEP" ]; then \
if [ "$SYMFONY_ENV" -ne "prod" ]; then \
composer install --prefer-dist --no-scripts --no-dev --no-progress --no-suggest --optimize-autoloader --classmap-authoritative && composer run-script continuous-pipe; \
else \
composer install -o --no-interaction --prefer-dist --no-scripts && composer run-script continuous-pipe; \
fi; \
fi;
# Remove cache and logs if some and fixes permissions
RUN rm -rf var/cache/* && rm -rf var/logs/* && rm -rf var/sessions/* && chmod a+r var/ -R
# Apache gets grumpy about PID files pre-existing
RUN rm -f /var/run/apache2/apache2.pid
RUN a2enmod ssl
EXPOSE 443
CMD ["/app/docker/apache/run.sh"]
This should be working properly and you could compare with ur existing configuration.

Where is the Postgres username/password being created in this Dockerfile?

So I was following this tutorial:
https://realpython.com/blog/python/django-development-with-docker-compose-and-machine/
I have everything up and running, however theres a few things going on that I'm not able to follow or understand.
In the main Docker-Compose we have:
web:
restart: always
build: ./web
expose:
- "8000"
links:
- postgres:postgres
- redis:redis
volumes:
- /usr/src/app
- /usr/src/app/static
env_file: .env
command: /usr/local/bin/gunicorn docker_django.wsgi:application -w 2 -b :8000
postgres:
restart: always
image: postgres:latest
ports:
- "5432:5432"
volumes:
- pgdata:/var/lib/postgresql/data/
You will notice there is a env_file containing:
DB_NAME=postgres
DB_USER=postgres
DB_PASS=postgres
My question is when is the postgres user and password being set? If I run this docker-compose everything works, meaning the web app can pass credentials to the postgress database and establish a connection. I'm not able to follow however, where those credentials are being set in the first place.
I was assuming in the base postgres Dockerfile, there would be some instruction to set the database name, username and password. I do not it though. Here is a copy of the base postgres Dockerfile below.
# vim:set ft=dockerfile:
FROM debian:jessie
# explicitly set user/group IDs
RUN groupadd -r postgres --gid=999 && useradd -r -g postgres --uid=999 postgres
# grab gosu for easy step-down from root
ENV GOSU_VERSION 1.7
RUN set -x \
&& apt-get update && apt-get install -y --no-install-recommends ca-certificates wget && rm -rf /var/lib/apt/lists/* \
&& wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$(dpkg --print-architecture)" \
&& wget -O /usr/local/bin/gosu.asc "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$(dpkg --print-architecture).asc" \
&& export GNUPGHOME="$(mktemp -d)" \
&& gpg --keyserver ha.pool.sks-keyservers.net --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4 \
&& gpg --batch --verify /usr/local/bin/gosu.asc /usr/local/bin/gosu \
&& rm -r "$GNUPGHOME" /usr/local/bin/gosu.asc \
&& chmod +x /usr/local/bin/gosu \
&& gosu nobody true \
&& apt-get purge -y --auto-remove ca-certificates wget
# make the "en_US.UTF-8" locale so postgres will be utf-8 enabled by default
RUN apt-get update && apt-get install -y locales && rm -rf /var/lib/apt/lists/* \
&& localedef -i en_US -c -f UTF-8 -A /usr/share/locale/locale.alias en_US.UTF-8
ENV LANG en_US.utf8
RUN mkdir /docker-entrypoint-initdb.d
RUN apt-key adv --keyserver ha.pool.sks-keyservers.net --recv-keys B97B0AFCAA1A47F044F244A07FCC7D46ACCC4CF8
ENV PG_MAJOR 9.6
ENV PG_VERSION 9.6.1-1.pgdg80+1
RUN echo 'deb http://apt.postgresql.org/pub/repos/apt/ jessie-pgdg main' $PG_MAJOR > /etc/apt/sources.list.d/pgdg.list
RUN apt-get update \
&& apt-get install -y postgresql-common \
&& sed -ri 's/#(create_main_cluster) .*$/\1 = false/' /etc/postgresql-common/createcluster.conf \
&& apt-get install -y \
postgresql-$PG_MAJOR=$PG_VERSION \
postgresql-contrib-$PG_MAJOR=$PG_VERSION \
&& rm -rf /var/lib/apt/lists/*
# make the sample config easier to munge (and "correct by default")
RUN mv -v /usr/share/postgresql/$PG_MAJOR/postgresql.conf.sample /usr/share/postgresql/ \
&& ln -sv ../postgresql.conf.sample /usr/share/postgresql/$PG_MAJOR/ \
&& sed -ri "s!^#?(listen_addresses)\s*=\s*\S+.*!\1 = '*'!" /usr/share/postgresql/postgresql.conf.sample
RUN mkdir -p /var/run/postgresql && chown -R postgres /var/run/postgresql
ENV PATH /usr/lib/postgresql/$PG_MAJOR/bin:$PATH
ENV PGDATA /var/lib/postgresql/data
VOLUME /var/lib/postgresql/data
COPY docker-entrypoint.sh /
ENTRYPOINT ["/docker-entrypoint.sh"]
EXPOSE 5432
CMD ["postgres"]
Not sure which postgres image are you using.
If you look at the official postgres image for complete information. It allows user to specify the environment variables for the below ones and these can be easily overridden at run time.
POSTGRES_PASSWORD
POSTGRES_USER
PGDATA
POSTGRES_DB
POSTGRES_INITDB_ARGS
Environment variables can be overridden using below three methods depending on your case.
Run Image: If running docker image directly, use below to include environment variable in docker run with -e K=V. Please refer documentation for more details here
docker run -e POSTGRES_PASSWORD=secrect -e POSTGRES_USER=postgres <other options> image/name
Dockerfile: If you need to specify the environment variable in Dockerfile, specify as mentioned below. Please refer documentation for more details here
ENV POSTGRES_PASSWORD=secrect
ENV POSTGRES_USER=postgres
docker-compose: If you need to specify the environment variable in docker-compose.yml, specify as below. Please refer documentation for more details here
web:
environment:
- POSTGRES_PASSWORD=secrect
- POSTGRES_USER=postgres
Hope this is useful.
I think the postgres user and password is being set on entrypoint, like in line 23 on official image entrypoint.
https://github.com/docker-library/postgres/blob/e4942cb0f79b61024963dc0ac196375b26fa60dd/9.6/docker-entrypoint.sh
Can you check your entrypoint?
All you need is
docker run -e POSTGRES_PASSWORD=123456 postgres
In the same way you can set up the username like below:
docker run -e POSTGRES_USERNAME=xyz postgres
Are you using the -v mounted folder? If so, you need to remove the entire pgdata/ folder you created previously so that the postgres can re-create itself using the new environment variables.

How to create docker image for postgis that will enable extension at build time or before container fully running?

What I mean is that I want to create a docker image for postgis that will be completely usable right after build. So that if user runs
docker run -e POSTGRES_USER=user somepostgis
the user database would be created and extensions already installed?
The official postgres image can't be used for that AFAIK.
Basically need to write script and tell that it would be entrypoint. This script should create database and create extensions with porstgres server running on different port and then restart it on port 5432.
But I don't know sh enough and docker to do that. Right now it's saying that there is no pg_ctl command
If you want to help you can fork
FROM ubuntu:15.04
#ENV RELEASE_NAME lsb_release -sc
#RUN apt-get update && apt-get install wget
#RUN echo "deb http://apt.postgresql.org/pub/repos/apt ${RELEASE_NAME}-pgdg main" >> /etc/apt/sources.list
#RUN cat /etc/apt/sources.list
#RUN wget --quiet -O - http://apt.postgresql.org/pub/repos/apt/ACCC4CF8.asc | sudo apt-key add -
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
postgresql-9.4-postgis-2.1 \
curl \
&& curl -o /usr/local/bin/gosu -SL "https://github.com/tianon/gosu/releases/download/1.2/gosu-$(dpkg --print-architecture)" \
&& curl -o /usr/local/bin/gosu.asc -SL "https://github.com/tianon/gosu/releases/download/1.2/gosu-$(dpkg --print-architecture).asc" \
&& gpg --verify /usr/local/bin/gosu.asc \
&& rm /usr/local/bin/gosu.asc \
&& chmod +x /usr/local/bin/gosu \
&& apt-get purge -y --auto-remove curl
RUN mkdir /docker-entrypoint-initdb.d
COPY docker-entrypoint.sh /
ENTRYPOINT ["/docker-entrypoint.sh"]
RUN chmod +x /docker-entrypoint.sh
RUN ls -l /docker-entrypoint.sh
EXPOSE 5432
CMD ["postgres"]
So I'm trying to do somethink like that, but it doesn't work.
#!/bin/bash
${POSTGRES_DB:=$POSTGRES_USER}
gosu postgres pg_ctl start -w -D ${PGDATA} -0 "-p 5433"
gosu postgres createuser ${POSTGRES_USER}
gosu postgres createdb ${POSTGRES_DB} -s -E UTF8
gosu postgres psql -d ${POSTGRES_DB} -c "create extension if not exists postgis;"
gosu postgres psql -d ${POSTGRES_DB} -c "create extension if not exists postgis_topology;"
pg_ctl -w restart