So i'm stuck again.
What I want to do: access a postgreSQL database via database link from Oracle (12.1 - yes, I know it's old ...).
Oracle is running on Centos 7.
Initially I did a
yum -y install postgresql-odbc
yum -y install unixODBC
and was able to access postgreSQL (running on another machine).
But it didn't work for UTF-8 data. Got a hint that this might be due to an old version of unixODBC so I decided to compile from source (as the centos package is rather old).
Compiling and installing unixODBC worked without a hassle:
wget http://www.unixodbc.org/unixODBC-2.3.11.tar.gz
tar xzf unixODBC-2.3.11.tar.gz
cd unixODBC-2.3.11/
./configure
make
make install
But compiling psqlODBC is where it's at:
yum install postgresql
yum install postgresql-devel
wget https://ftp.postgresql.org/pub/odbc/versions/src/psqlodbc-13.02.0000.tar.gz
cd psqlodbc-13.02.0000/
./configure
make
...
Make gives me the following output:
[root#tukanbox psqlodbc-13.02.0000]# make
make all-am
make[1]: Entering directory `/root/psqlodbc-13.02.0000'
/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c -o psqlodbcw_la-connection.lo `test -f 'connection.c' || echo './'`connection.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c connection.c -fPIC -DPIC -o .libs/psqlodbcw_la-connection.o
connection.c: In function 'handle_pgres_error':
connection.c:900:45: error: 'PG_DIAG_SCHEMA_NAME' undeclared (first use in this function)
errschemaname = PQresultErrorField(pgres, PG_DIAG_SCHEMA_NAME);
^
connection.c:900:45: note: each undeclared identifier is reported only once for each function it appears in
connection.c:901:44: error: 'PG_DIAG_TABLE_NAME' undeclared (first use in this function)
errtablename = PQresultErrorField(pgres, PG_DIAG_TABLE_NAME);
^
connection.c:902:45: error: 'PG_DIAG_COLUMN_NAME' undeclared (first use in this function)
errcolumnname = PQresultErrorField(pgres, PG_DIAG_COLUMN_NAME);
^
connection.c:903:47: error: 'PG_DIAG_DATATYPE_NAME' undeclared (first use in this function)
errdatatypename = PQresultErrorField(pgres, PG_DIAG_DATATYPE_NAME);
^
make[1]: *** [psqlodbcw_la-connection.lo] Fehler 1
make[1]: Leaving directory `/root/psqlodbc-13.02.0000'
make: *** [all] Fehler 2
Wondering where to declare these undeclared idenifiers. What does it want to know here? How to solve it?
No answer to the problem of not being able to compile - but an answer to the original problem that the original packages didn't work for UTF8:
https://www.postgresql.org/message-id/OFA166DBFD.19742AF7-ONC1257B6A.005692E6-C1257B6A.0056F890#lladro.net
This has to be done in the database as sysdba:
select fds_class_name from HS_FDS_CLASS;
select * from hs_class_caps where upper(CAP_DESCRIPTION) like '%NCHAR%' and FDS_CLASS_NAME ='ODBC12.1.0.1.0_0017';
exec DBMS_HS.ALTER_CLASS_CAPS('ODBC12.1.0.1.0_0017' , 564, 'ODBC12.1.0.1.0_0017', 564,131071, NULL, NULL);
I need to sync some postgres tables with elasticsearch and come to conclusion that the best solution for my case is the one described here. Unfortunately I'm still failing to install required postgres extension amqp.
I use docker so I start from image postgres:13-alpine.
Here is how my Dockerfile looks like so far:
FROM postgres:13-alpine
ENV POSTGRES_DB ''
ENV POSTGRES_USER ''
ENV POSTGRES_PASSWORD ''
RUN apk update \
&& apk add py-pip make gcc \
&& pip install pgxnclient
Then when you enter the container and try to run pgxn install pg_amqp you will get following error.
bash-5.1# pgxn install pg_amqp
INFO: best version: pg_amqp 0.3.0
INFO: saving /tmp/tmpgjtefhgh/pg_amqp-0.3.0.zip
INFO: unpacking: /tmp/tmpgjtefhgh/pg_amqp-0.3.0.zip
INFO: building extension
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wimplicit-fallthrough=3 -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -O2 -fPIC -I. -I./ -I/usr/local/include/postgresql/server -I/usr/local/include/postgresql/internal -D_GNU_SOURCE -I/usr/include/libxml2 -c -o src/pg_amqp.o src/pg_amqp.c
src/pg_amqp.c:36:10: fatal error: unistd.h: No such file or directory
36 | #include <unistd.h>
| ^~~~~~~~~~
compilation terminated.
make: *** [<builtin>: src/pg_amqp.o] Error 1
ERROR: command returned 2: make PG_CONFIG=/usr/local/bin/pg_config all
It seems that I am out of the ideas what to do with that. Any help?
You are missing the musl C library (libc) implementation: musl-dev
RUN apk update \
&& apk add py-pip make gcc musl-dev \
&& pip install pgxnclient
I have been trying to compile and install Orange 2.7.8 on Raspberry Pi 2 but was unsuccessful. I tried compiling by hand and also used pip install orange as per suggestion from: How can I install python-Orange on ubuntu 12.10
The first warning I got this:
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.7 -I/usr/lib/pymodules/python2.7/numpy/core/include -Isource/include -Isource/orange/liblinear -Isource/orange/ppp -Isource/orange/px -I/usr/include/python2.7 -c source/orange/basstat.cpp -o build/temp.linux-armv7l-2.7/source/orange/basstat.o -fPIC -w -DLINUX -DORANGE_EXPORTS
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for Ada/C/ObjC but not for C++ [enabled by default]
But it kept going without an error. Then when it started compiling with g++, it started getting an error on multiple definition of TOrangeVector. There are many errors like the lines below:
build/temp.linux-armv7l-2.7/source/orange/distance.o:(.data.rel.ro+0x6c): multiple definition of `typeinfo for TOrangeVector<GCPtr<TVariable>, true>'
build/temp.linux-armv7l-2.7/source/orange/basstat.o:(.data.rel.ro+0x6c): first defined here
build/temp.linux-armv7l-2.7/source/orange/distance.o: In function `TExamplesDistance::classDescription() const':
/home/pi/build/orange/source/orange/ppp/distance.ppp:17: multiple definition of `typeinfo for TOrangeVector<bool, false>'
In the end it got kicked out:
/home/pi/build/orange/source/orange/vectortemplates.hpp:1075: multiple definition of `typeinfo name for TOrangeVector<GCPtr<TOrangeVector<GCPtr<TVariable>, true> >, true>'
build/temp.linux-armv7l-2.7/source/orange/basstat.o:/home/pi/build/orange/source/orange/ppp/../basstat.hpp:8: first defined here
collect2: ld returned 1 exit status
error: command 'g++' failed with exit status 1
Any guide on how to tweak this to make it compiled would be appreciated.
I'm installing Image::Magick via cpan and I keep getting this error. I've tried with and without forcing it. I've trimmed the install log. I've read something about missing an ImageMagick.h file but don't exactly know anything other then that. Apparently this has been a common problem since 2007.....
[gandalf#Durmstrang ~]$ cpan -if Image::Magick
"/usr/bin/perl" "/usr/share/perl5/vendor_perl/ExtUtils/xsubpp" -typemap "/usr/share/perl5/ExtUtils/typemap" -typemap "typemap" Magick.xs > Magick.xsc && mv Magick.xsc Magick.c
gcc -c -I/usr/local/include/ImageMagick-6 -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/libxml2 -I"/usr/include/ImageMagick-6" -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/freetype2 -g -O2 -Wall -pthread -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DVERSION=\"6.89\" -DXS_VERSION=\"6.89\" -fPIC "-I/usr/lib64/perl5/CORE" -D_LARGE_FILES=1 -DHAVE_CONFIG_H Magick.c
Magick.xs: In function ‘XS_Image__Magick_ComplexImages’:
Magick.xs:3475:5: error: unknown type name ‘ComplexOperator’
ComplexOperator
^
Magick.xs:3510:8: error: ‘UndefinedComplexOperator’ undeclared (first use in this function)
op=UndefinedComplexOperator;
^
Magick.xs:3510:8: note: each undeclared identifier is reported only once for each function it appears in
Magick.xs:3516:31: error: ‘MagickComplexOptions’ undeclared (first use in this function)
in=ParseCommandOption(MagickComplexOptions,MagickFalse,(char *)
^
Magick.xs:3524:13: error: ‘ComplexOperator’ undeclared (first use in this function)
op=(ComplexOperator) in;
^
Magick.xs:3524:30: error: expected ‘;’ before ‘in’
op=(ComplexOperator) in;
^
Magick.xs:3548:38: error: expected ‘;’ before ‘in’
op=(ComplexOperator) in;
^
Magick.xs:3563:5: warning: implicit declaration of function ‘ComplexImages’ [-Wimplicit-function-declaration]
image=ComplexImages(image,op,exception);
^
Magick.xs:3563:10: warning: assignment makes pointer from integer without a cast [enabled by default]
image=ComplexImages(image,op,exception);
^
Magick.xs: In function ‘XS_Image__Magick_Mogrify’:
Magick.xs:9824:11: warning: implicit declaration of function ‘RotationalBlurImageChannel’ [-Wimplicit-function-declaration]
image=RotationalBlurImageChannel(image,channel,geometry_info.rho,
^
Magick.xs:9824:16: warning: assignment makes pointer from integer without a cast [enabled by default]
image=RotationalBlurImageChannel(image,channel,geometry_info.rho,
^
Magick.xs:10895:11: warning: implicit declaration of function ‘CannyEdgeImage’ [-Wimplicit-function-declaration]
image=CannyEdgeImage(image,geometry_info.rho,geometry_info.sigma,
^
Magick.xs:10895:16: warning: assignment makes pointer from integer without a cast [enabled by default]
image=CannyEdgeImage(image,geometry_info.rho,geometry_info.sigma,
^
Magick.xs:10916:11: warning: implicit declaration of function ‘HoughLineImage’ [-Wimplicit-function-declaration]
image=HoughLineImage(image,(size_t) geometry_info.rho,(size_t)
^
Magick.xs:10916:16: warning: assignment makes pointer from integer without a cast [enabled by default]
image=HoughLineImage(image,(size_t) geometry_info.rho,(size_t)
^
Magick.xs:10939:11: warning: implicit declaration of function ‘MeanShiftImage’ [-Wimplicit-function-declaration]
image=MeanShiftImage(image,(size_t) geometry_info.rho,(size_t)
^
Magick.xs:10939:16: warning: assignment makes pointer from integer without a cast [enabled by default]
image=MeanShiftImage(image,(size_t) geometry_info.rho,(size_t)
^
make: *** [Magick.o] Error 1
JCRISTY/PerlMagick-6.89-1.tar.gz
/usr/bin/make -- NOT OK
Running make test
Can't test without successful make
Running make install
Make had returned bad status, install seems impossible
The problem is that CPAN doesn't know about non-Perl dependencies.
The Perl Image::Magick module is just a wrapper around a C library. You'll need that library installed before you can build the Perl module.
$ sudo yum install ImageMagick
It also probably need ImageMagick's development package.
$ sudo yum install ImageMagick-devel
But it's probably easier to just install the RPM version that has already been packaged for Fedora (that will automatically pull in any other requirements).
$ sudo yum install ImageMagick-perl
In Fedora, CentOS, Ubuntu and more there have been this type of challenge in geting Image::Magick to install via the cpan program, and there have been sensitivities about the install-script for Image::Magick for a couple of years, it seems (if one searches around). This is so both for on desktop Linux and, even more so, via Apache cpanel. There are recipies but at least at Ubuntu, they have not been solving all issues. Sometimes, to get it right, one must first do removal of relevant libraries using ImageMagick to reset the links. All the proposed solutions center around installing other things before using 'cpan'. However, the best approach, I find, isn't at all to compile from source but to install the binary ImageMagick application when that is available, and relevant libraries before and after cpan, like this--in Ubuntu, but adapted for Fedora it should be similar or much the same:
sudo apt-get install perlmagick
sudo apt-get install ImageMagick
sudo cpan install Image::Magick
sudo apt-get install libperl-dev
For the sake of completeness, if one cannot find the right binary, one must take care to preinstall all relevant libraries as indicated on http://www.imagemagick.org and then this set of commands will replace the line#2 above, when performed after 'sudo -i' (in Ubuntu) or equivalent in Fedora, inside a temporary folder:
wget http://www.imagemagick.org/download/ImageMagick.tar.gz
tar xvfz ImageMagick.tar.gz
cd Imag*
./configure --with-perl
make
make install
When this installation is complete, proceed with line#3 above. Adapt the beginning of the command to the form that fits with other forms of linuxes. After this, a perl program having use Image::Magick; in its start should be able to do such as resizing of jpg images etc flawlessly.
I am having some trouble getting py27-scipy to build & install after upgrading to the latest version of macports (MacPorts base version 2.0.3 installed).
The exact build error is:-
:info:build In file included from scipy/integrate/_quadpackmodule.c:6:
:info:build scipy/integrate/__quadpack.h:54: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:55: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:56: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:57: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:58: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:59: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h:60: warning: function declaration isn't a prototype
:info:build scipy/integrate/__quadpack.h: In function 'quad_function':
:info:build scipy/integrate/__quadpack.h:74: warning: unused variable 'nb'
:info:build scipy/integrate/_quadpackmodule.c: At top level:
:info:build /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_3kcompat.h:391: warning: 'simple_capsule_dtor' defined but not used
:info:build /opt/local/bin/gfortran-mp-4.4 -Wall -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.6-x86_64-2.7/scipy/integrate/_quadpackmodule.o -L/opt/local/lib/gcc44/gcc/x86_64-apple-darwin10/4.4.6 -Lbuild/temp.macosx-10.6-x86_64-2.7 -lquadpack -llinpack_lite -lmach -lgfortran -o build/lib.macosx-10.6-x86_64-2.7/scipy/integrate/_quadpack.so
:info:build building 'scipy.integrate._odepack' extension
:info:build compiling C sources
:info:build C compiler: /opt/local/bin/gcc-mp-4.4 -fno-strict-aliasing -fno-common -dynamic -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
:info:build
:info:build compile options: '-DNO_ATLAS_INFO=3 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
:info:build extra options: '-faltivec -I/System/Library/Frameworks/vecLib.framework/Headers'
:info:build gcc-mp-4.4: scipy/integrate/_odepackmodule.c
:info:build cc1: error: unrecognized command line option "-faltivec"
:info:build cc1: error: unrecognized command line option "-faltivec"
:info:build error: Command "/opt/local/bin/gcc-mp-4.4 -fno-strict-aliasing -fno-common -dynamic -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DNO_ATLAS_INFO=3 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c scipy/integrate/_odepackmodule.c -o build/temp.macosx-10.6-x86_64-2.7/scipy/integrate/_odepackmodule.o -faltivec -I/System/Library/Frameworks/vecLib.framework/Headers" failed with exit status 1
:info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-scipy/py27-scipy/work/scipy-0.9.0" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.4 --f90exec /opt/local/bin/gfortran-mp-4.4 config --cc /opt/local/bin/gcc-mp-4.4 --include-dirs /opt/local/include --library-dirs /opt/local/lib build " returned error 1
:error:build Target org.macports.build returned: shell command failed (see log for details)
:debug:build Backtrace: shell command failed (see log for details)
while executing
"command_exec build"
(procedure "portbuild::build_main" line 8)
invoked from within
"$procedure $targetname"
:info:build Warning: the following items did not execute (for py27-scipy): org.macports.activate org.macports.build org.macports.destroot org.macports.install
:notice:build Log for py27-scipy is at: /opt/local/var/macports
/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-scipy/py27-scipy/main.log
Any suggestions to point me in the right direction?
I had exactly the same issue. In my case it was caused by an old dev build of numpy on my systems that was confusing the build process. Removing the referenced .egg entirely worked for me. See the MacPorts ticket:
https://trac.macports.org/ticket/31833
This problem was a result of gfortran/gcc44 not compiling properly because I was using Lion/XCode 4.2.
Reference macports ticket that was resolved - https://trac.macports.org/ticket/31604