Drop records not aligning with Schema: Parquet: Spark scala - scala

Spark scala
I have a directory in azure blob storage. It has parquet files.
AId | BId | UpdatedTime
Due to some code issue, there are two types of values in UpdatedTime. Some records are of string type and some are timestamp type.
I want to read only the records that have string datatype in my dataframe. Below code is not working and still throwing exception: Expected string found Int96.
val myschema = new StructType().
add("AId", StringType, true).
add("BId", StringType, true).
add("UpdatedTime", StringType, true)
spark.read.format("parquet").
option("mode", "DROPMALFORMED").
schema(myschema).
load(path)
Exception:
Command finishedat 05-26-2021 03:13:35.093 -07:00, execution took 19s 410ms
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 3, wn17-o365ma.2ltx0s20kdeufjhsteurve1kdf.dx.internal.cloudapp.net, executor 30):
org.apache.spark.sql.execution.QueryExecutionException: Parquet column cannot be converted in file abfs://root#acc.dfs.core.windows.net/path/to/directory/part-00072-0e119bb6-4ec8-436c-bf23-34dad8c28e4c.c000.snappy.parquet. Column: [lastUpdated], Expected: string, Found: INT96
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:187)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:101)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.scan_nextBatch_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:255)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.sql.execution.datasources.SchemaColumnConvertNotSupportedException
at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.constructConvertNotSupportedException(VectorizedColumnReader.java:250)
at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.decodeDictionaryIds(VectorizedColumnReader.java:343)
at org.apache.spark.sql.execution.datasources.parquet.VectorizedColumnReader.readBatch(VectorizedColumnReader.java:191)
at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextBatch(VectorizedParquetRecordReader.java:261)
at org.apache.spark.sql.execution.datasources.parquet.VectorizedParquetRecordReader.nextKeyValue(VectorizedParquetRecordReader.java:159)
at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:101)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:181)
... 23 more

Related

Unable to read files located on Unix file system with Spark using wholeTextFiles method

I'm facing a problem concerning the reading of files deposited on a linux file system:
/app/dev/spark/test1.json
/app/dev/spark/test2.json
I'm trying to read these files using the wholeTextFiles method by declaration of the SparkContext:
object HdfsHelper extends App {
val path: String = ...
val ss: SparkSession = SparkSession.builder().getOrCreate()
val sc: SparkContext = ss.sparkContext
val files = sc.wholeTextFiles(path).collect()
}
I tested several syntaxes concerning the path variable including the following:
file:////app/dev/spark
file:///app/dev/spark
file://app/dev/spark
file:/app/dev/spark
/app/dev/spark
But none of them work and my program always ends with the error message:
Caused by: java.io.FileNotFoundException: File file:/app/dev/spark/test1.json does not exist
at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:539)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:752)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:529)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:409)
at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.<init>(ChecksumFileSystem.java:142)
at org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:346)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:766)
at org.apache.spark.input.WholeTextFileRecordReader.nextKeyValue(WholeTextFileRecordReader.scala:75)
at org.apache.hadoop.mapreduce.lib.input.CombineFileRecordReader.nextKeyValue(CombineFileRecordReader.java:69)
at org.apache.spark.rdd.NewHadoopRDD$$anon$1.hasNext(NewHadoopRDD.scala:230)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$class.foreach(Iterator.scala:891)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1334)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1334)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1334)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990)
at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Any ideas ?
(I'm using the 2.4.0 Spark version.)

Scala Runtime Error : org.apache.spark.SparkException:Failed to execute user defined function(Tokenizer$$Lambda$../..: (string) => array<string>)

I have the following program which is running in cluster mode of 4 EMR VM
val spark = is a spark session
val file_path = input from args
val wherePutOutput = file_path +"\\output\\"
val whereReadingDB = file_path + "\\inputJsonFiles"
// PREPROCESS DB and WRITE IT on S3
var toBePreprocessedDB = readFullDBFromJson ( whereReadingDB, spark ) repartition 5
//PREPROCESS FULL DB
println("starting preprocessing")
val preProcessData = new DataPreprocessing ( toBePreprocessedDB )
var tokenizedPreprocessedDB = preProcessData.preProcessDF()
//WRITE PREPROCESSED DBs TO A FILE
println("finished preprocessing and starting to writing files" )
tokenizedPreprocessedDB.write mode ( SaveMode.Overwrite ) format ( "json" ) save ( wherePutOutput + "foo/" )
where DataPreprocessing class is
class DataPreprocessing(private var df: DataFrame ) {
def preProcessDF(): DataFrame = {
val cleanedDF = removePuntuaction ()
val tokenizedDF = tokenize ( cleanedDF )
removeStopWords ( tokenizedDF )
}
def setDF(newDF: DataFrame): Unit = {
df = newDF
}
//return sentenceDF_clean
private def removePuntuaction(): DataFrame = {
df.select ( col ( "id" ), lower ( regexp_replace ( col ( "content" ), "[^a-zA-Z\\s]", "" ) ).alias ( "text" ) )
}
private def tokenize(df: DataFrame): DataFrame = {
val tokenizer = new Tokenizer ().setInputCol ( "text" ).setOutputCol ( "words" )
tokenizer.transform ( df ).select ( col ( "id" ), col ( "words" ) )
}
private def removeStopWords(df: DataFrame): DataFrame = {
val remover = new StopWordsRemover ().setInputCol ( "words" ).setOutputCol ( "words_clean" )
remover.transform ( df ).select ( col ( "id" ), col ( "words_clean" ) )
}
}
Now, my runtime error is the following and it happens on the execution of the write command.
[ERROR] Aborting task
org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
[ERROR] Job job_20210508112210_0006 aborted.
[ERROR] Exception in task 3.0 in stage 6.0 (TID 62)
org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
[ WARN] Lost task 3.0 in stage 6.0 (TID 62, LAPTOP-H7MM9952, executor driver): org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
[ERROR] Task 3 in stage 6.0 failed 1 times; aborting job
[ERROR] Aborting job f82df4a0-373c-4517-a1cf-fe70a2c7086c.
org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 6.0 failed 1 times, most recent failure: Lost task 3.0 in stage 6.0 (TID 62, LAPTOP-H7MM9952, executor driver): org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2008)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2007)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2007)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:973)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2239)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2188)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2177)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:775)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2099)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:195)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:178)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:108)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:106)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:131)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:175)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:213)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:210)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:171)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:122)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:121)
at org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:963)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:87)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:764)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:963)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:415)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:399)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:288)
at ServiceMain$.block_of_code(ServiceMain.scala:105)
at ServiceMain$.$anonfun$main$1(ServiceMain.scala:226)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at ServiceMain$.time(ServiceMain.scala:251)
at ServiceMain$.main(ServiceMain.scala:226)
at ServiceMain.main(ServiceMain.scala)
Caused by: org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
[ WARN] Failed to delete file or dir [C:\...\_temporary\0\_temporary\attempt_20210508112210_0006_m_000000_59\.part-00000-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json.crc]: it still exists.
[ERROR] Aborting task
org.apache.spark.TaskKilledException
at org.apache.spark.TaskContextImpl.killTaskIfInterrupted(TaskContextImpl.scala:156)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:36)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:460)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
[ WARN] Failed to delete file or dir [C:\...\output\wikidb\_temporary\0\_temporary\attempt_20210508112210_0006_m_000000_59\part-00000-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json]: it still exists.
[ WARN] Failed to delete file or dir [C:\...\output\wikidb\_temporary\0\_temporary\attempt_20210508112210_0006_m_000001_60\.part-00001-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json.crc]: it still exists.
[ WARN] Failed to delete file or dir [C:\...\output\wikidb\_temporary\0\_temporary\attempt_20210508112210_0006_m_000001_60\part-00001-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json]: it still exists.
[ WARN] Failed to delete file or dir [C:\...\output\wikidb\_temporary\0\_temporary\attempt_20210508112210_0006_m_000002_61\.part-00002-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json.crc]: it still exists.
[ WARN] Failed to delete file or dir [C:\...\output\wikidb\_temporary\0\_temporary\attempt_20210508112210_0006_m_000002_61\part-00002-15278b9c-2615-425f-a831-9622cc1e3fc2-c000.json]: it still exists.
[ERROR] Job job_20210508112210_0006 aborted.
[ERROR] Aborting task
org.apache.spark.TaskKilledException
...
[ERROR] Job job_20210508112210_0006 aborted.
[ERROR] Aborting task
org.apache.spark.TaskKilledException
...
Exception in thread "main" org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:226)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:178)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:108)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:106)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:131)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:175)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:213)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:210)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:171)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:122)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:121)
at org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:963)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$5(SQLExecution.scala:100)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:160)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:87)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:764)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:963)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:415)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:399)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:288)
at ServiceMain$.block_of_code(ServiceMain.scala:105)
at ServiceMain$.$anonfun$main$1(ServiceMain.scala:226)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at ServiceMain$.time(ServiceMain.scala:251)
at ServiceMain$.main(ServiceMain.scala:226)
at ServiceMain.main(ServiceMain.scala)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 6.0 failed 1 times, most recent failure: Lost task 3.0 in stage 6.0 (TID 62, LAPTOP-H7MM9952, executor driver): org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2008)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2007)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2007)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:973)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:973)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2239)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2188)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2177)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:775)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2099)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:195)
... 27 more
Caused by: org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:291)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:205)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:127)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(Tokenizer$$Lambda$2873/1370139092: (string) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage3.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$1(FileFormatWriter.scala:272)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:281)
... 9 more
Caused by: java.lang.NullPointerException
at org.apache.spark.ml.feature.Tokenizer.$anonfun$createTransformFunc$1(Tokenizer.scala:40)
... 15 more
[ERROR] Job job_20210508112210_0006 aborted.
The created tokenizedPreprocessedDB is a two columns spark dataframe. <id, array(string)>
What I already tried is:
df.na.fill(...) , to remove every null value even if none was found.
I checked that every "WrappedArray[String]" in the column was actually a WrappedArray and not a String value.
I set the nullable property of the column as false
I also noticed that, trying to run "df.rdd.foreach( row => println(row))" the execution fails with the same error. Removing "repartition by" the error is not thrown by the "println" statement, but the "write" statement throws it.
Any suggestion ?

scala null point exception while creating a dataframe

I'm trying to read files from a location and load it into a spark dataframe. The below code works correctly:
val tempDF:DataFrame=spark.read.orc(targetDirectory)
When I try to provide the schema for the same, the code fails with the issue:
Exception in thread "main" org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 3, brdn6136.target.com, executor 25): java.lang.NullPointerException
at org.apache.spark.sql.execution.datasources.orc.OrcColumnVector.getDouble(OrcColumnVector.java:152)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$10$$anon$1.hasNext(WholeStageCodegenExec.scala:614)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:253)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Below is the code I used:
val schema = StructType(
List(
StructField("Col1",DoubleType,true),
StructField("Col2",StringType,true),
StructField("Col3",DoubleType,true),
StructField("Col4",DoubleType,true),
StructField("Col5",DoubleType,true),
StructField("Col6",StringType,true),
StructField("Col7",StringType,true),
StructField("Col8",StringType,true),
StructField("Col9",StringType,true),
StructField("Col10",StringType,true),
StructField("Col11",StringType,true),
StructField("Col12",StringType,true)
)
)
val df:DataFrame=spark.read.format("orc")
.schema(schema)
.load(targetReadDirectory)
Can anyone please help me to resolve the issue ?

Problem with java.lang.NullPointerException on Spark Scala

I have the geoareas table and the places table, in places table i only have the geoarea_id and in geoareas table i have the id and the name
My goal here is create a function that take the geoarea_id array and transform in a names array
Declaring the tables:
val geoareas =
(
spark.table("location.geoareas")
)
val places =
(
spark.table("location.places")
.select('id, 'name, 'geoareas, 'lat, 'lng)
)
Function:
import org.apache.spark.sql.functions.udf
import org.apache.spark.sql.functions.{concat,lit}
import org.apache.spark.sql.Row
import scala.collection.mutable
def _searchGeocode(origin:Seq[String]): Seq[String] = {
var retlist = Seq("#")
for (i <- origin){
val procvalue = geoareas.where('id ===i).select(concat('adminlevel, lit(":"), 'name)).collect()(0).toString.replace("[","").replace("]","")
retlist ++= Seq(procvalue)
}
retlist.filter(!_.contains("#"))
}
When i test with a unique sequence, it works:
val test = Seq("59138c8a03205749cd00ceb3", "59138ad003205749cdfac6c4", "59138adf03205749cdfb0067", "59138ace03205749cdfabeeb")
_searchGeocode(test).filter(!_.contains("#"))
it returns
Seq[String] = List(6:McHenry County, 8:Woodstock, 2:United States of America, 4:Illinois)
Obs: the number is the admin_level of the geoarea_id, with it i know if is a country, state...
The error appears when i try to transform a entire column:
spark.udf.register("searchGeocode", _searchGeocode _)
val searchGeocode = udf(_searchGeocode _)
places.limit(10).select('geoareas).where('geoareas.isNotNull).withColumn("test", searchGeocode('geoareas)).show()
it throws me:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 64.0 failed 4 times, most recent failure: Lost task 0.3 in stage 64.0 (TID 9047, 10.2.91.129, executor 6): org.apache.spark.SparkException: Failed to execute user defined function($anonfun$1: (array<string>) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage2.project_doConsume_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage2.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:255)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at $anonfun$_searchGeocode$1.apply(<console>:197)
at $anonfun$_searchGeocode$1.apply(<console>:196)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35)
at _searchGeocode(<console>:196)
at $anonfun$1.apply(<console>:192)
at $anonfun$1.apply(<console>:192)
... 22 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1889)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1877)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1876)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1876)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2110)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2048)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3389)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3370)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:78)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3369)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2550)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2764)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:254)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:291)
at org.apache.spark.sql.Dataset.show(Dataset.scala:751)
at org.apache.spark.sql.Dataset.show(Dataset.scala:710)
at org.apache.spark.sql.Dataset.show(Dataset.scala:719)
... 77 elided
Caused by: org.apache.spark.SparkException: Failed to execute user defined function($anonfun$1: (array<string>) => array<string>)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage2.project_doConsume_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage2.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:255)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$2.apply(SparkPlan.scala:247)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:836)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
... 3 more
Caused by: java.lang.NullPointerException
at $anonfun$_searchGeocode$1.apply(<console>:197)
at $anonfun$_searchGeocode$1.apply(<console>:196)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35)
at _searchGeocode(<console>:196)
at $anonfun$1.apply(<console>:192)
at $anonfun$1.apply(<console>:192)
... 22 more
what i'm doing wrong?
Haven't tested this, but I think you want to do something like this instead:
val searchGeocode = udf(_searchGeocode)
places.limit(10).select('geoareas).where('geoareas.isNotNull).withColumn("test", searchGeocode('geoareas)).show()
I don't think you need _ placeholder when using udf function.

Rdd verify Date format and remove row if date format is incorrect Scala Spark

Sample rddDate: [2016-08-01,"pm",5,"ri"]
There are some rows with incorrect format of a date in this RDD, so I can't count rows in RDD. That throws IndexOutOfBound exception.
Used Date format is java.sql.Date
The expected Date Format is for every row in RDD: "yyyy-mm-dd"
2016-08-01
To verify date format in RDD, below code is implemented,
val rddVerified: RDD[(Date, String, Long, String)] = rddDate.map{
a => {
val fmt = DateTimeFormat forPattern "yyyy-mm-dd"
val input = a._1.toString
try {
val output = fmt parseDateTime input
} catch {
case e: Exception => {
val v1 = new java.util.Date("2016-08-01")
val v2 = new Date(a1.getTime)
val ed:(Date,String, Int, String) = (v2, "p1",2,"r1")
Some(ed) // This gives compile time error
}
} finally {
Some(a._1, a._2,a._3,a._4)
}
}
}
I am not able to handle the exception in catch section. I want to either remove that row from the RDD or correct the format of date in that row.
I want to get returned RDD in this format:
RDD[(Date, String, Long, String)]
Thanks.
UPDATE
Exception when counting Dataframe:
COUNT : :
[error] o.a.s.e.Executor - Exception in task 0.0 in stage 7.0 (TID 7)
java.lang.IndexOutOfBoundsException: 1
at scala.collection.LinearSeqOptimized$class.apply(LinearSeqOptimized.scala:65)
at scala.collection.immutable.List.apply(List.scala:84)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:464)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
[warn] o.a.s.s.TaskSetManager - Lost task 0.0 in stage 7.0 (TID 7, localhost, executor driver): java.lang.IndexOutOfBoundsException: 1
at scala.collection.LinearSeqOptimized$class.apply(LinearSeqOptimized.scala:65)
at scala.collection.immutable.List.apply(List.scala:84)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:464)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:395)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
[error] o.a.s.s.TaskSetManager - Task 0 in stage 7.0 failed 1 times; aborting job
[warn] o.a.s.s.BlockManager - Putting block rdd_1_1 failed due to an exception
[warn] o.a.s.s.BlockManager - Block rdd_1_1 could not be removed as it was not found on disk or in memory
[warn] o.a.s.s.BlockManager - Putting block rdd_1_2 failed due to an exception
[warn] o.a.s.s.BlockManager - Block rdd_1_2 could not be removed as it was not found on disk or in memory
[warn] o.a.s.s.TaskSetManager - Lost task 1.0 in stage 7.0 (TID 8, localhost, executor driver): TaskKilled (unknown reason)
[warn] o.a.s.s.TaskSetManager - Lost task 2.0 in stage 7.0 (TID 9, localhost, executor driver): TaskKilled (unknown reason)
[error] application -
stage failure: Task 0 in stage 7.0 failed 1 times, most recent failure: Lost task 0.0 in stage 7.0 (TID 7, localhost, executor driver): java.lang.IndexOutOfBoundsException: 1
at scala.collection.LinearSeqOptimized$class.apply(LinearSeqOptimized.scala:65)
at scala.collection.immutable.List.apply(List.scala:84)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:464)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:395)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:]]
at play.api.http.HttpErrorHandlerExceptions$.throwableToUsefulException(HttpErrorHandler.scala:293)
at play.api.http.DefaultHttpErrorHandler.onServerError(HttpErrorHandler.scala:220)
at play.api.GlobalSettings$class.onError(GlobalSettings.scala:160)
at play.api.DefaultGlobal$.onError(GlobalSettings.scala:188)
at play.api.http.GlobalSettingsHttpErrorHandler.onServerError(HttpErrorHandler.scala:100)
at play.core.server.netty.PlayRequestHandler$$anonfun$2$$anonfun$apply$1.applyOrElse(PlayRequestHandler.scala:100)
at play.core.server.netty.PlayRequestHandler$$anonfun$2$$anonfun$apply$1.applyOrElse(PlayRequestHandler.scala:99)
at scala.concurrent.Future$$anonfun$recoverWith$1.apply(Future.scala:346)
at scala.concurrent.Future$$anonfun$recoverWith$1.apply(Future.scala:345)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:36)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 7.0 failed 1 times, most recent failure: Lost task 0.0 in stage 7.0 (TID 7, localhost, executor driver): java.lang.IndexOutOfBoundsException: 1
at scala.collection.LinearSeqOptimized$class.apply(LinearSeqOptimized.scala:65)
at scala.collection.immutable.List.apply(List.scala:84)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:464)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:395)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1499)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1487)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1486)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1486)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
Caused by: java.lang.IndexOutOfBoundsException: 1
at scala.collection.LinearSeqOptimized$class.apply(LinearSeqOptimized.scala:65)
at scala.collection.immutable.List.apply(List.scala:84)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at controllers.Spark$$anonfun$5.apply(Spark.scala:78)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:464)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
I would recommend using Dataset. It is not only faster and simpler, but also future friendly
import org.apache.spark.sql.functions.to_date
val spark: SparkSession = ???
import spark.implicits._
rddDate.toDF.withColumn("_1", to_date($"_1"))
.na.drop(Seq("_1))
.as[(java.sql.Date, String, Long, String)]
Edit
But the problem is some else in your code.
Caused by: java.lang.IndexOutOfBoundsException: 1
Suggest that you make some mistake, probably in the parsing logic. You have to step back to the place where you call apply add exception handling there.