I have a standard Python docker image that needs to start after postgers is properly started in its standard image.
I understand that I can add this Bash command in the docker-compose file:
command: bash -c 'while !</dev/tcp/db/5432; do sleep 1; done; npm start'
depends_on:
- mypostgres
But I don't have bash installed in the standard python docker image, and I'm trying to keep the installation minimal.
Is there a way to wait for postgres without having bash installed in my image?
I have a standard Python docker image that needs to start after postgres is properly started in its standard image.
You mentioned "Python docker image", but you appear to be calling npm start, which is a node.js application, not a Python application.
The standard Python images do have bash installed (as do the official Node images):
$ docker run -it --rm python:3.10 bash
root#c9bdac2e23f9:/#
However, just checking for the port to be available may be insufficient in any case, so really what you want is to execute a query against the database and only continue once the query is successful.
A common solution is to install the postgres cli and run psql in a loop, like this:
until psql -h $HOST -U $USER -d $DB_NAME -c 'select 1' >/dev/null 2>&1; do
echo 'Waiting for database...'
sleep 1
done
You can use environment variables or a .pgpass file to provide the appropriate password.
If you are building a custom image, it may be better to place this logic in your ENTRYPOINT script rather than embedding it in the command field of your docker-compose.yaml.
If you don't want to psql, you can write the same logic in Python or Node utilizing whatever Postgres bindings are available (e.g., something like psycopg2 for Python).
A better solution is to make your application robust in the face of database failures, because this allows your application to continue running if the database is briefly unavailable during a restart.
I have a .sql file created from a pg_dump command that I would like to have automatically inserted into my PostgreSQL instance in my Docker container. I mount my .sql file into the docker-entrypoint-initdb.ddirectory using volume. My Docker YML file looks like the following:
postgres:
environment:
- POSTGRES_USER=user
- POSTGRES_PASSWORD=pw
- POSTGRES_DB=db
volumes:
- ./out.sql:/docker-entrypoint-initdb.d/out.sql
image: "postgres:9.6"
Since the sql file has been mounted into docker-entrypoint-initdb.d I expect it to automatically run and insert my data when I run docker-compose -f myyml.yml up -d. It does not execute. However, when I run bash in my container I do see my .sql file. Also, I can manually run the file with a command similar to psql -U user -a -f out.sql. Why is it not automatically running when I run docker-compose?
So after a lot of trial and error, I realized that I needed to remove all images and containers and restart. I ran a docker-compose myyml.yml down and reran and it seemed to work.
i think you can add command in docker compose, and as following psql -U user -a -f out.sql
postgres:
environment:
- POSTGRES_USER=user
- POSTGRES_PASSWORD=pw
- POSTGRES_DB=db
volumes:
- ./out.sql:/docker-entrypoint-initdb.d/out.sql
image: "postgres:9.6"
command: bash -c "psql -U user -a -f out.sql"
note : if with use command bash -c is not work, remove it
I've got a custom image based on the official postgres image and I want to extend the entrypoint of the parent image so that it would create new users and databases if they don't exist yet every time a container starts up. Is it possible? Like my image would execute all the commands from the standard entrypoint plus my own shell script.
I know about putting my own scripts into the /docker-entrypoint-initdb.d directory, but it seems that they get executed only when the volume is created the first time.
What you need to do is something like below
setup_user.sh
sleep 10
echo "execute commands to setup user"
setup.sh
sh setup_user.sh &
./docker-entrypoint.sh postgres
And your image should use the ENTRYPOINT as
ENTRYPOINT ["/setup.sh"]
You need to start your setup script in background and let the origin entryscript do its works to start the database
In addition to the accepted answer Docker - extend the parent's ENTRYPOINT, instead of sleeping a specific time, you may want to consider executing your script similar to how ''docker-entrypoint.sh'' of the postgres docker image does it (docker-entrypoint.sh; to init the DB, they start the server, execute initialization commands, and shut it down again). Thus:
setup_user.sh
su - "$YOUR_PG_USER" -c '/usr/local/bin/pg_ctl -D /var/lib/postgresql/data -o "-c listen_addresses='localhost'" -w start'
psql -U "$YOUR_PG_USER" "$YOUR_PG_DATABASE" < "$YOUR_SQL_COMMANDS"
su - "$YOUR_PG_USER" -c '/usr/local/bin/pg_ctl -D /var/lib/postgresql/data -m fast -w stop'
setup.sh
./setup_user.sh && ./docker-entrypoint.sh postgres
Trying to make Dockerfile for postgres db need for my app.
Dockerfile
FROM postgres:9.4
RUN mkdir /sql
COPY src/main/resources/sql_scripts/* /sql/
RUN psql -f /sql/create_user.sql
RUN psql -U user -W 123 -f create_db.sql
RUN psql -U user -W 123 -d school_ats -f create_tables.sql
run
docker build .
result:
Sending build context to Docker daemon 3.367 MB
Step 1 : FROM postgres:9.4
---> 6196bca94565
Step 2 : RUN mkdir /sql
---> Using cache
---> 6f57c1e759b7
Step 3 : COPY src/main/resources/sql_scripts/* /sql/
---> Using cache
---> 3b496bfb28cd
Step 4 : RUN psql -a -f /sql/create_user.sql
---> Running in 33b2230a12fa
psql: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
The command '/bin/sh -c psql -a -f /sql/create_user.sql' returned a non-zero code: 2
How can I specify db in docker for my project?
When building your docker image postgres is not running. Database is started when container is starting, any sql files can be executed after that. Easiest solution is to put your sql files into special directory:
FROM postgres:9.4
COPY *.sql /docker-entrypoint-initdb.d/
When booting startup script will execute all files from this dir. You can read about this in docs https://hub.docker.com/_/postgres/ in section How to extend this image.
Also, if you need different user you should set environment variables POSTGRES_USER and POSTGRES_PASSWORD. It's easier then using custom scripts for creating user.
As the comment above says during the image build you don't get a running instance of Postgres.
You could take slightly different approach. Instead of trying to execute SQL scripts yourself you could copy them to /docker-entrypoint-initdb.d/ directory. They will be executed when the container starts up.
Have a look how postgres:9.4 image is build:
Dockerfile
docker-entrypoint.sh
Also in your Dockerfile use variables to set database details:
POSTGRES_DB
POSTGRES_USER
POSTGRES_PASSWORD
I'm using the official Postgres Docker image, trying to customize its configuration. For this purpose, I use the command sed to change max_connections for example:
sed -i -e"s/^max_connections = 100.*$/max_connections = 1000/" /var/lib/postgresql/data/postgresql.conf
I tried two methods to apply this configuration:
The first is by adding the commands to a script and copying it within the init folder: /docker-entrypoint-initdb.d.
The second method is by running the commands directly within my Dockerfile with the "RUN" command (this method worked fine with a non-official PostgreSQL image with a different path to the configuration file /etc/postgres/...).
In both cases the changes fail because the configuration file is missing (I think it's not created yet).
How should I change the configuration?
Here is the Dockerfile used to create the image:
# Database (http://www.cs3c.ma/)
FROM postgres:9.4
MAINTAINER Sabbane <contact#cs3c.ma>
ENV TERM=xterm
RUN apt-get update
RUN apt-get install -y nano
ADD scripts /scripts
# ADD scripts/setup-my-schema.sh /docker-entrypoint-initdb.d/
# Allow connections from anywhere.
RUN sed -i -e"s/^#listen_addresses =.*$/listen_addresses = '*'/" /var/lib/postgresql/data/postgresql.conf
RUN echo "host all all 0.0.0.0/0 md5" >> /var/lib/postgresql/data/pg_hba.conf
# Configure logs
RUN sed -i -e"s/^#logging_collector = off.*$/logging_collector = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_directory = 'pg_log'.*$/log_directory = '\/var\/log\/postgresql'/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_filename = 'postgresql-\%Y-\%m-\%d_\%H\%M\%S.log'.*$/log_filename = 'postgresql_\%a.log'/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_file_mode = 0600.*$/log_file_mode = 0644/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_truncate_on_rotation = off.*$/log_truncate_on_rotation = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_rotation_age = 1d.*$/log_rotation_age = 1d/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_min_duration_statement = -1.*$/log_min_duration_statement = 0/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_checkpoints = off.*$/log_checkpoints = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_connections = off.*$/log_connections = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_disconnections = off.*$/log_disconnections = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^log_line_prefix = '\%t \[\%p-\%l\] \%q\%u#\%d '.*$/log_line_prefix = '\%t \[\%p\]: \[\%l-1\] user=\%u,db=\%d'/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_lock_waits = off.*$/log_lock_waits = on/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#log_temp_files = -1.*$/log_temp_files = 0/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#statement_timeout = 0.*$/statement_timeout = 1800000 # in milliseconds, 0 is disabled (current 30min)/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^lc_messages = 'en_US.UTF-8'.*$/lc_messages = 'C'/" /var/lib/postgresql/data/postgresql.conf
# Performance Tuning
RUN sed -i -e"s/^max_connections = 100.*$/max_connections = 1000/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^shared_buffers =.*$/shared_buffers = 16GB/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#effective_cache_size = 128MB.*$/effective_cache_size = 48GB/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#work_mem = 1MB.*$/work_mem = 16MB/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#maintenance_work_mem = 16MB.*$/maintenance_work_mem = 2GB/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#checkpoint_segments = .*$/checkpoint_segments = 32/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#checkpoint_completion_target = 0.5.*$/checkpoint_completion_target = 0.7/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#wal_buffers =.*$/wal_buffers = 16MB/" /var/lib/postgresql/data/postgresql.conf
RUN sed -i -e"s/^#default_statistics_target = 100.*$/default_statistics_target = 100/" /var/lib/postgresql/data/postgresql.conf
VOLUME ["/var/lib/postgresql/data", "/var/log/postgresql"]
CMD ["postgres"]
With this Dockerfile, the build process produces an error:
sed: can't read /var/lib/postgresql/data/postgresql.conf: No such file or directory
With Docker Compose
When working with Docker Compose, you can use command: postgres -c option=value in your docker-compose.yml to configure Postgres.
For example, this makes Postgres log to a file:
command: postgres -c logging_collector=on -c log_destination=stderr -c log_directory=/logs
Adapting Vojtech Vitek's answer, you can use
command: postgres -c config_file=/etc/postgresql.conf
to change the config file Postgres will use. You'd mount your custom config file with a volume:
volumes:
- ./customPostgresql.conf:/etc/postgresql.conf
Here's the docker-compose.yml of my application, showing how to configure Postgres:
# Start the app using docker-compose pull && docker-compose up to make sure you have the latest image
version: '2.1'
services:
myApp:
image: registry.gitlab.com/bullbytes/myApp:latest
networks:
- myApp-network
db:
image: postgres:9.6.1
# Make Postgres log to a file.
# More on logging with Postgres: https://www.postgresql.org/docs/current/static/runtime-config-logging.html
command: postgres -c logging_collector=on -c log_destination=stderr -c log_directory=/logs
environment:
# Provide the password via an environment variable. If the variable is unset or empty, use a default password
# Explanation of this shell feature: https://unix.stackexchange.com/questions/122845/using-a-b-for-variable-assignment-in-scripts/122848#122848
- POSTGRES_PASSWORD=${POSTGRES_PASSWORD:-4WXUms893U6j4GE&Hvk3S*hqcqebFgo!vZi}
# If on a non-Linux OS, make sure you share the drive used here. Go to Docker's settings -> Shared Drives
volumes:
# Persist the data between container invocations
- postgresVolume:/var/lib/postgresql/data
- ./logs:/logs
networks:
myApp-network:
# Our application can communicate with the database using this hostname
aliases:
- postgresForMyApp
networks:
myApp-network:
driver: bridge
# Creates a named volume to persist our data. When on a non-Linux OS, the volume's data will be in the Docker VM
# (e.g., MobyLinuxVM) in /var/lib/docker/volumes/
volumes:
postgresVolume:
Permission to write to the log directory
Note that when on Linux, the log directory on the host must have the right permissions.
Otherwise you'll get the slightly misleading error
FATAL: could not open log file
"/logs/postgresql-2017-02-04_115222.log": Permission denied
I say misleading, since the error message suggests that the directory in the container has the wrong permission, when in reality the directory on the host doesn't permit writing.
To fix this, I set the correct permissions on the host using
chgroup ./logs docker && chmod 770 ./logs
The postgres:9.4 image you've inherited from declares a volume at /var/lib/postgresql/data. This essentially means you can't copy any files to that path in your image; the changes will be discarded.
You have a few choices:
You could just add your own configuration files as a volume at run-time with docker run -v postgresql.conf:/var/lib/postgresql/data/postgresql.conf .... However, I'm not sure exactly how that will interact with the existing volume.
You could copy the file over when the container is started. To do that, copy your file into the build at a location which isn't underneath the volume then call a script from the entrypoint or cmd which will copy the file to the correct location and start Postgres.
Clone the project behind the Postgres official image and edit the Dockerfile to add your own config file in before the VOLUME is declared (anything added before the VOLUME instruction is automatically copied in at run-time).
Pass all config changes in command option in docker-compose file
Like this:
services:
postgres:
...
command:
- "postgres"
- "-c"
- "max_connections=1000"
- "-c"
- "shared_buffers=3GB"
- "-c"
...
When you run the official entrypoint (i.e, when you launch the container), it runs initdb in $PGDATA (/var/lib/postgresql/data by default), and then it stores two files in that directory:
postgresql.conf with default manual settings.
postgresql.auto.conf with settings overriden automatically with ALTER SYSTEM commands.
The entrypoint also executes any /docker-entrypoint-initdb.d/*.{sh,sql} files.
All this means you can supply a shell/SQL script in that folder that configures the server for the next boot (which will be immediately after the DB initialization, or the next time you boot the container).
Example:
conf.sql file:
ALTER SYSTEM SET max_connections = 6;
ALTER SYSTEM RESET shared_buffers;
Dockerfile file:
FROM posgres:9.6-alpine
COPY *.sql /docker-entrypoint-initdb.d/
RUN chmod a+r /docker-entrypoint-initdb.d/*
And then you will have to execute conf.sql manually in the already existing databases. Since configuration is stored in the volume, it will survive rebuilds.
An alternative is to pass the -c option as many times as you wish:
docker container run -d postgres -c max_connections=6 -c log_lock_waits=on
This way, you don't need to build a new image, and you don't need to care about already existing or not databases; all will be affected.
Inject custom postgresql.conf into Postgres Docker container
The default postgresql.conf file lives within the PGDATA dir (/var/lib/postgresql/data), which makes things more complicated especially when running the Postgres container for the first time, since the docker-entrypoint.sh wrapper invokes the initdb step for PGDATA dir initialization.
To customize the PostgreSQL configuration in Docker consistently, I suggest using the config_file Postgres option together with Docker volumes like this:
Production database (PGDATA dir as Persistent Volume)
docker run -d \
-v $CUSTOM_CONFIG:/etc/postgresql.conf \
-v $CUSTOM_DATADIR:/var/lib/postgresql/data \
-e POSTGRES_USER=postgres \
-p 5432:5432 \
--name postgres \
postgres:9.6 postgres -c config_file=/etc/postgresql.conf
Testing database (PGDATA dir will be discarded after docker rm)
docker run -d \
-v $CUSTOM_CONFIG:/etc/postgresql.conf \
-e POSTGRES_USER=postgres \
--name postgres \
postgres:9.6 postgres -c config_file=/etc/postgresql.conf
Debugging
Remove the -d (detach option) from docker run command to see the server logs directly.
Connect to the Postgres server with the psql client and query the configuration:
docker run -it --rm --link postgres:postgres postgres:9.6 sh -c 'exec psql -h $POSTGRES_PORT_5432_TCP_ADDR -p $POSTGRES_PORT_5432_TCP_PORT -U postgres'
psql (9.6.0)
Type "help" for help.
postgres=# SHOW all;
You can put your custom postgresql.conf in a temporary file inside the container, and overwrite the default configuration at runtime.
To do that:
Copy your custom postgresql.conf inside your container
Copy the updateConfig.sh file in /docker-entrypoint-initdb.d/
Dockerfile
FROM postgres:9.6
COPY postgresql.conf /tmp/postgresql.conf
COPY updateConfig.sh /docker-entrypoint-initdb.d/_updateConfig.sh
updateConfig.sh
#!/usr/bin/env bash
cat /tmp/postgresql.conf > /var/lib/postgresql/data/postgresql.conf
At runtime, the container will execute the script inside /docker-entrypoint-initdb.d/ and overwrite the default configuration with your custom one.
I looked through all the answers and there is another option left: You can change your CMD value in the Dockerfile (it is not the best one, but still a possible way to achieve your goal).
Basically we need to:
Copy the config file into the Docker container
Override Postgres start options
Dockerfile example:
FROM postgres:9.6
USER postgres
# Copy Postgres config file into container
COPY postgresql.conf /etc/postgresql
# Override default Postgres config file
CMD ["postgres", "-c", "config_file=/etc/postgresql/postgresql.conf"]
Though I think using command: postgres -c config_file=/etc/postgresql/postgresql.conf in your docker-compose.yml file as proposed by Matthias Braun is the best option.
I was also using the official image (FROM postgres)
and I was able to change the config by executing the following commands.
The first thing is to locate the PostgreSQL config file.
This can be done by executing this command in your running database.
SHOW config_file;
I my case it returns /data/postgres/postgresql.conf.
The next step is to find out what is the hash of your running PostgreSQL docker container.
docker ps -a
This should return a list of all the running containers. In my case it looks like this.
...
0ba35e5427d9 postgres "docker-entrypoint.s…" ....
...
Now you have to switch to the bash inside your container by executing:
docker exec -it 0ba35e5427d9 /bin/bash
Inside the container check if the config is at the correct path and display it.
cat /data/postgres/postgresql.conf
I wanted to change the max connections from 100 to 1000 and the shared buffer from 128MB to 3GB.
With the sed command I can do a search and replace with the corresponding variables ins the config.
sed -i -e"s/^max_connections = 100.*$/max_connections = 1000/" /data/postgres/postgresql.conf
sed -i -e"s/^shared_buffers = 128MB.*$/shared_buffers = 3GB/" /data/postgres/postgresql.conf
The last thing we have to do is to restart the database within the container.
Find out which version you of PostGres you are using.
cd /usr/lib/postgresql/
ls
In my case its 12
So you can now restart the database by executing the following command with the correct version in place.
su - postgres -c "PGDATA=$PGDATA /usr/lib/postgresql/12/bin/pg_ctl -w restart"
A fairly low-tech solution to this problem seems to be to declare the service (I'm using swarm on AWS and a yaml file) with your database files mounted to a persisted volume (here AWS EFS as denoted by the cloudstor:aws driver specification).
version: '3.3'
services:
database:
image: postgres:latest
volumes:
- postgresql:/var/lib/postgresql
- postgresql_data:/var/lib/postgresql/data
volumes:
postgresql:
driver: "cloudstor:aws"
postgresql_data:
driver: "cloudstor:aws"
The db comes up as initialized with the image default settings.
You edit the conf settings inside the container, e.g if you want to increase the maximum number of concurrent connections that requires a restart
stop the running container (or scale the service down to zero and then back to one)
the swarm spawns a new container, which this time around picks up your persisted configuration settings and merrily applies them.
A pleasant side-effect of persisting your configuration is that it also persists your databases (or was it the other way around) ;-)
My solution is for colleagues who needs to make changes in config before launching docker-entrypoint-initdb.d
I was needed to change 'shared_preload_libraries' setting so during it's work postgres already has new library preloaded and code in docker-entrypoint-initdb.d can use it.
So I just patched postgresql.conf.sample file in Dockerfile:
RUN echo "shared_preload_libraries='citus,pg_cron'" >> /usr/share/postgresql/postgresql.conf.sample
RUN echo "cron.database_name='newbie'" >> /usr/share/postgresql/postgresql.conf.sample
And with this patch it become possible to add extension in .sql file in docker-entrypoint-initdb.d/:
CREATE EXTENSION pg_cron;
Using docker compose you can mount a volume with postgresql.auto.conf.
Example:
version: '2'
services:
db:
image: postgres:10.9-alpine
volumes:
- postgres:/var/lib/postgresql/data:z
- ./docker/postgres/postgresql.auto.conf:/var/lib/postgresql/data/postgresql.auto.conf
ports:
- 5432:5432