In both cmd and powershell, when I input conda init powershell, it always failed as follows:
(ifcmapping) C:\Windows\system32>conda init powershell
no change C:\Users\haoli\anaconda3\Scripts\conda.exe
no change C:\Users\haoli\anaconda3\Scripts\conda-env.exe
no change C:\Users\haoli\anaconda3\Scripts\conda-script.py
no change C:\Users\haoli\anaconda3\Scripts\conda-env-script.py
no change C:\Users\haoli\anaconda3\condabin\conda.bat
no change C:\Users\haoli\anaconda3\Library\bin\conda.bat
no change C:\Users\haoli\anaconda3\condabin\_conda_activate.bat
no change C:\Users\haoli\anaconda3\condabin\rename_tmp.bat
no change C:\Users\haoli\anaconda3\condabin\conda_auto_activate.bat
no change C:\Users\haoli\anaconda3\condabin\conda_hook.bat
no change C:\Users\haoli\anaconda3\Scripts\activate.bat
no change C:\Users\haoli\anaconda3\condabin\activate.bat
no change C:\Users\haoli\anaconda3\condabin\deactivate.bat
no change C:\Users\haoli\anaconda3\Scripts\activate
no change C:\Users\haoli\anaconda3\Scripts\deactivate
no change C:\Users\haoli\anaconda3\etc\profile.d\conda.sh
no change C:\Users\haoli\anaconda3\etc\fish\conf.d\conda.fish
no change C:\Users\haoli\anaconda3\shell\condabin\Conda.psm1
no change C:\Users\haoli\anaconda3\shell\condabin\conda-hook.ps1
no change C:\Users\haoli\anaconda3\Lib\site-packages\xontrib\conda.xsh
no change C:\Users\haoli\anaconda3\etc\profile.d\conda.csh
needs sudo C:\Users\haoli\OneDrive\??\WindowsPowerShell\profile.ps1
No action taken.
Operation failed.
I already run as Admin. How to solve it? Thanks!
In here
needs sudo C:\Users\haoli\OneDrive??\WindowsPowerShell\profile.ps1
I assume the ??\ are not English letters, you need to change it to English.
Check onedrive online, it is English on my local PC but not in English in the cloud. I changed the folder name to 'Documents'(where my PowerShell is at) in the cloud and synced the change to local. Worked for me.
On Windows when you let OneDrive back up your Documents folder, the folder points to the Documents folder on the cloud, and the actual name of it depends on the language of your system, which I assume it is "文档" in your case.
I just disabled the Documents backup in OneDrive settings, and re-run conda init, which gave me the result
modified C:\Users\username\Documents\WindowsPowerShell\profile.ps1
If you'd prefer not disabling the OneDrive backup, you can try Zixin's answer, I am just not sure if you should mess up with the default settings of the backup folder and if it will cause problem.
Related
I am configuring Blast+ on my mac (os sierra) and am having trouble configuring my nr and nt databases that I also downloaded locally. I am trying to follow NCBI's instructions here, and am getting hung up on the Configuration and Example Execution steps.
They say to change my .bash_profile so that it says:
export PATH=$PATH:$HOME/Documents/Luke/Research/Pedulla\ 17-18/blast/ncbi-blast-2.6.0+/bin
That works fine, and they say configure a path for BLASTDB "similarly" but to the file where my DB will be, so I have done this:
export BLASTDB=$BLASTDB:$HOME/Documents/Luke/Research/Pedulla\ 17-18/blast/blastdb/nt.00
which specifies the exact folder that I got when I unzipped the nt tar file from their FTP. With this path, if I run the command...
blastn -query test_query.fa -db nt.00 -task blastn -outfmt "7 qseqid sseqid evalue bitscore" -max_target_seqs 5
then it runs successfully and I get results, but I am worried that these are only being checked against the nt.00 section of the entire nt.00 database file, especially because if I run my test_query.fa sequence on the Web Blast, I get different results.
Also, their instructions say that the path only needs to point to the folder that contains the whole database folder nt.00, from the tar I unzipped--and not the specific nt.00 itself--, which in my case would just be "blastdb/" (As opposed to "blastdb/nt.00/" which then contains nt.00.nhd, nt.00.nal, etc.). That makes sense because when I am working I want to be able to blastn on the nt database but also blastp on the nr one, etc. by changing the -db flag on my command, and there shouldn't be a problem with having them all in this folder, right? But if I must specify the path for BLASTDB with the nt.00 DB added to the end, how could I ever use nr.00 in the same folder (blastdb/)? Essentially, I want to do as the instructions say, and just have this:
export BLASTDB=$BLASTDB:$HOME/Documents/Luke/Research/Pedulla\ 17-18/blast/blastdb/
And then depending on what database I want to use I could just say so after the -db flag on my command. But when I make the path like that above, it gives me this error:
BLAST Database error: No alias or index file found for nucleotide database [nt] in search path [/Users/LJStout::/Users/LJStout/Documents/Luke/Research/Pedulla 17-18/blast/blastdb:]
I have tried running that same blastn command from above and swapping out "nt" for "nt.00", and have tried these commands with the path for BLASTDB ending in both "blastdb/" and "blastdb/nt" and of course "blastdb/nt.00" which is the only one that runs without errors.
Here's an example of another thread I read where the OP is worried about his executions not checking the entire nt.00 folder, this was different than my problem however.
Thanks for you help!
This whole problem came down to having the nt.00 & nr.00 files, the original folders that result from unzipping their respective .tar.gz's, in the same parent folder when it should be that their contents are in the same parent folder. I simply deleted the folders they came in and copied the contents over to my new, singular parent. I was kind of mislead by the instructions, it was a simple mistake. Now, I have one folder, blastdb/ that contains all of the contents of every database I plan on using, including nt,nr, and refseq.
I got the following error while starting JBoss from a command line prompt today:
'findstr' is not recognized as an internal or external command
Please google it, you can find a lot of answers. But do as below to fix it. Add the following value to Right Click My Compuer -> Advanced -> Environment Variables -> System Variables -> Select Path variable -> append the below value.
C:\WINDOWS\system32
It should work with that change.
As others pointed, issue is in wrong settings of PATH variable in Windows.
According to article this is most probably because some stupid installer wrongly modified PATH variable in Windows registry. Registry has 2 different string value types - REG_SZ and REG_EXPAND_SZ. Only the second one allows for expansion of %SystemRoot%.
So check your path by typing set path in command prompt. If you see unexpanded %SystemRoot% and other variables in Path, you are affected (PATH should show only plain directory names, not variables).
You need to edit Path variable in registry: HKEY_CURRENT_USER\Environment and HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Control\Session Manager\Environment. As it is not possible to change the type of key, save the path value somewhere, delete the key and re-create it with type REG_EXPAND_SZ. You need to logout for changes to take effect.
for me it works when I've coped findstr(from windows/system32) to wildfly/bin
Please go throught the simplest steps:-
go to C:\Windows\system32\ and copy findstr.exe file.
paste this file into the location C:\Program Files\Java\jdk1.6.0_24\bin
Run your jboss again you will get out of this.....
Check to see if you %SystemRoot% is evaluating (type set path into a command prompt, you should not see %SystemRoot%, but instead that actual path). If your path variable's (user, or systems) first entry begins with an %(an environment variable) this can cause an issue.
To resolve this, simply swap this first entry with anything else in your path that does not lead with an environment variable.
You can also hard code the directory by replacing 'findstr' with 'C:\Windows\system32\findstr'. This is useful when using systems with restricted user permissions.
I have try to work with play framework but stuck with to run activator.bat file but solution is the same just copy file from windows/system32/findsr and past it to under stuck folder then run the respective file again.
thanks to andrewsiand Suryaprakash
Please beware that current Windows systems use a Capital "S" for the System directory, so:
C:\WINDOWS\System32
%SystemRoot%\System32
Omitting the capital S will result in a neglect of the line in the %PATH%
In my case (not JBoss related) the following helped to fixed this error.
Instead of:
SET path="%path%;C:\some\additional\path"
I used:
SET "path=%path%;C:\some\additional\path"
For IBM ACE solution for
'findstr' is not recognized as an internal or external command,
Go to the path C:\Windows\System32
Find the findstr.exe, copy it and then find the path where you bin file of your application is found. eg C:\Program Files\IBM\ACE\11.0.0.12\server\bin then past it inside the bin file
cancel the console of ace and re-open it.
Then run ACE toolkit command on ace console.
Then press enter, now it can open.
I would like to move my default "My Documents\WindowsPowerShell" folder. However, when I try this, PowerShell of course can't find $profile. Is there a file or something that I can edit to point PowerShell to a different startup folder?
What I can suggest is that you dot source the file having the content of your profile in the file $profile.AllUsersAllHosts
$profile.AllUsersAllHosts is something like C:\Windows\System32\WindowsPowerShell\v1.0\profile.ps1
Related question: Is it possible to change the default value of $profile to a new value?
You could use junction.exe from Sysinternals to make the WindowsPowershell directory a symbolic link to another location (but not a network drive).
You could do this if you wanted to store the profile scripts at C:\POSH
junction.exe "$HOME\Documents\WindowsPowerShell" 'C:\POSH'
As far as i know you can't do that. The user profile location is always under 'My Documents\WindowsPowerShell' and your only option is to relocate your documents folder (folder redirection).
By default $Profile/$Home/$PSModulePath are all within the registry... normally under
HKEY_CURRENT_USER\Volatile Environment for User environment variables
HKEY_CURRENT_USER\Environment for System environment variables
HKEY_CURRENT_USER\Software\Microsoft\Windows\Explorer\User Shell Folders
and elsewhere!
I have tried multiple options. I check properties and tried to uncheck read-only (but again it is changed back to read-only). I tried changing the permissions from command prompt and do rm -rf but still not able to delete the folder.
Is there any trickery by which we can delete it. I am not able to get which process is using it.
This behavior occurs because the folder is customized. You can customize a folder by clicking Customize this folder on the View menu. Many programs also customize folders (for example, the Fonts folder comes with a customization as part of the standard system configuration).
Following steps will tell you how to modify the registry. However, serious problems might occur if you modify the registry incorrectly. Therefore, make sure that you follow these steps carefully. For added protection, back up the registry before you modify it. Then, you can restore the registry if a problem occurs.
Start Registry Editor (Regedit.exe).
Locate the following registry key:
HKEY_LOCAL_MACHINE\Software\Microsoft\Windows\Current Version\Explorer
On the Edit menu, point to New, click DWORD Value, and then type the following registry value name:
UseSystemForSystemFolders
Right-click the new value, and then click Modify.
Type 1, and then click OK.
Quit Registry Editor.
After you make this change to the registry, you must change the Read-Only attribute for all affected folders by using the attrib command at a command prompt (Command.com or Cmd.exe). Type attrib /? at the command prompt to view the syntax for the attrib command. For example, to change the Read-Only attribute to System for the C:\Test folder, use the following command:
attrib -r +s c:\test
On all my Windows servers, except for one machine, when I execute the following code to allocate a temporary files folder:
use CGI;
my $tmpfile = new CGITempFile(1);
print "tmpfile='", $tmpfile->as_string(), "'\n";
The variable $tmpfile is assigned the value '.\CGItemp1' and this is what I want. But on one of my servers it's incorrectly set to C:\temp\CGItemp1.
All the servers are running Windows 2003 Standard Edition, IIS6 and ActivePerl 5.8.8.822 (upgrading to later version of Perl not an option). The result is always the same when running a script from the command line or in IIS as a CGI script (where scriptmap .pl = c:\perl\bin\perl.exe "%s" %s).
How I can fix this Perl installation and force it to return '.\CGItemp1' by default?
I've even copied the whole Perl folder from one of the working servers to this machine but no joy.
#Hometoast:
I checked the 'TMP' and 'TEMP' environment variables and also $ENV{TMP} and $ENV{TEMP} and they're identical.
From command line they point to the user profile directory, for example:
C:\DOCUME~1\[USERNAME]\LOCALS~1\Temp\1
When run under IIS as a CGI script they both point to:
c:\windows\temp
In registry key HKEY_USERS/.DEFAULT/Environment, both servers have:
%USERPROFILE%\Local Settings\Temp
The ActiveState implementation of CGITempFile() is clearly using an alternative mechanism to determine how it should generate the temporary folder.
#Ranguard:
The real problem is with the CGI.pm module and attachment handling. Whenever a file is uploaded to the site CGI.pm needs to store it somewhere temporary. To do this CGITempFile() is called within CGI.pm to allocate a temporary folder. So unfortunately I can't use File::Temp. Thanks anyway.
#Chris:
That helped a bunch. I did have a quick scan through the CGI.pm source earlier but your suggestion made me go back and look at it more studiously to understand the underlying algorithm. I got things working, but the oddest thing is that there was originally no c:\temp folder on the server.
To obtain a temporary fix I created a c:\temp folder and set the relevant permissions for the website's anonymous user account. But because this is a shared box I couldn't leave things that way, even though the temp files were being deleted. To cut a long story short, I renamed the c:\temp folder to something different and magically the correct '.\' folder path was being returned. I also noticed that the customer had enabled FrontPage extensions on the site, which removes write access for the anonymous user account on the website folders, so this permission needed re-applying. I'm still at a loss as to why at the start of this issue CGITempFile() was returning c:\temp, even though that folder didn't exist, and why it magically started working again.
The name of the temporary directory is held in $CGITempFile::TMPDIRECTORY and initialised in the find_tempdir function in CGI.pm.
The algorithm for choosing the temporary directory is described in the CGI.pm documentation (search for -private_tempfiles).
IIUC, if a C:\Temp folder exists on the server, CGI.pm will use it. If none of the directories checked in find_tempdir exist, then the current directory "." is used.
I hope this helps.
Not the direct answer to your question, but have you tried using File::Temp?
It is specifically designed to work on any OS.
If you're running this script as you, check the %TEMP% environment variable to see if if it differs.
If IIS is executing, check the values in registry for TMP and TEMP under
HKEY_USERS/.DEFAULT/Environment