Good day,
I am using a sample code from snowflake documentation on using pyspark to connect to it:
sfparams = {
"sfURL": "SOME_URL",
"sfUser": "SOME_USER",
"sfPassword": "SOME_PASSWORD",
"sfDatabase": "SOME_DB",
"sfSchema": "SOME_SCHEMA",
"sfWarehouse": "SOME_WH",
"sfRole": "sysadmin"
}
df = self.spark_sql_context\
.read\
.format('snowflake')\
.options(**sfparams)\
.option('query', "SELECT * FROM TABLE1 LIMIT 10")\
.load()
df.show(truncate = False)
I have downloaded the required jar files (snowflake-jdbc-3.9.2.jar and spark-snowflake_2.11-2.9.3-spark_2.4.jar) and put them inside spark jars directory. Have also added the following to spark config:
.set("spark.jars", "/path_to/spark-2.4.5-bin-without-hadoop/jars/snowflake-jdbc-3.4.2.jar") \
.set("spark.jars", "/path_to/spark-2.4.5-bin-without-hadoop/jars/spark-snowflake_2.11-2.9.3-spark_2.4.jar")
However, whenever I try to run the code above, the following exception shows up:
: java.lang.NoClassDefFoundError: net/snowflake/client/jdbc/SnowflakeLoggedFeatureNotSupportedException
at net.snowflake.spark.snowflake.DefaultSource.createRelation(DefaultSource.scala:68)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:318)
at org.apache.spark.sql.DataFrameReader.loadV1Source(DataFrameReader.scala:223)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:211)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:167)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: net.snowflake.client.jdbc.SnowflakeLoggedFeatureNotSupportedException
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 16 more
Couldn't find anything anywhere on how to deal with it so here I am.
Educated guess. As the query is simple .option('query', "SELECT * FROM TABLE1 LIMIT 10")\
it may contain a column with not supported data type like BLOB/BINARY. If that is the case then explicit column list and omitting such column will help.
Using the Spark Connector - From Snowflake to Spark SQL
Related
After looking at the documentation and looking at some stackoverflow posts, I tried two different methods, but I feel I might be doing something wrong before that.
To start off, this is what some_list_without_header.csv looks like:
12345
23456
34567
schema_for_list = StructType([StructField('_c0', StringType())])
some_list = spark.read.csv("some_list_without_header.csv", header=False, schema = schema_for_list).collect()
###
schema_for_data = StructType([
StructField('COLUMN_TO_CHECK', StringType()),
StructField('COLUMN2', StringType())
])
data = spark.read.csv("data.csv", header = True, schema = schema_for_data)
### Tried few ways, here are couple examples, neither working
data.filter(data.COLUMN_TO_CHECK.isin(some_list))
data.where(F.col('COLUMN_TO_CHECK').isin(some_list))
Here is the error message
Py4JJavaError: An error occurred while calling z:org.apache.spark.sql.functions.lit.
: org.apache.spark.SparkRuntimeException: The feature is not supported: literal for '[EXAMPLE_NUMBER_STRING]' of class java.util.ArrayList.
at org.apache.spark.sql.errors.QueryExecutionErrors$.literalTypeUnsupportedError(QueryExecutionErrors.scala:296)
at org.apache.spark.sql.catalyst.expressions.Literal$.apply(literals.scala:101)
at org.apache.spark.sql.functions$.lit(functions.scala:125)
at org.apache.spark.sql.functions.lit(functions.scala)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.ClientServerConnection.waitForCommands(ClientServerConnection.java:182)
at py4j.ClientServerConnection.run(ClientServerConnection.java:106)
at java.base/java.lang.Thread.run(Thread.java:829)
When I finished the data processing,I need to save the data back to the Postgre DB.
I can use the same JDBC properties which I used in reading data out. I faced the error . I can insert the data in Data Grip with the same config and that JDBC config is not for read-only. I can use the same config to write via Data Grip.
I cannot insert the data with logic below :
glueContext.write_dynamic_frame.from_options(
frame=DynamicFrame.fromDF(dataFrame, glueContext,"tableName"),
connection_type="postgresql",
connection_options={
"url": jdbcConfig["url"],
"user": jdbcConfig["user"],
"password": jdbcConfig["password"],
"dbtable": "tableName"
}
)
And below is the error I faced(Got from CloudWatch log):
ERROR [Thread-9] postgresql.Driver (Driver.java:connect(233)): Error in url: jdbc:postgresql://cc2-data-analytics-cluster-ndec.cluster-abcdefg.us-west-2.rds.amazonaws.com:5440
2022-04-13 22:36:26,838 INFO [Thread-9] log.GlueLogger (GlueLogger.scala:info(8)): Exception as An error occurred while calling o203.pyWriteDynamicFrame.
: java.lang.Exception: Connection can not be established. Please check your JDBC url, username and password.
at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$12.apply(JDBCUtils.scala:968)
at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$12.apply(JDBCUtils.scala:964)
at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$connectWithSSLAttempt$1$$anonfun$apply$8.apply(JDBCUtils.scala:920)
at scala.Option.getOrElse(Option.scala:121)
at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$connectWithSSLAttempt$1.apply(JDBCUtils.scala:920)
at scala.Option.getOrElse(Option.scala:121)
at com.amazonaws.services.glue.util.JDBCWrapper$.connectWithSSLAttempt(JDBCUtils.scala:920)
at com.amazonaws.services.glue.util.JDBCWrapper$.connectionProperties(JDBCUtils.scala:963)
at com.amazonaws.services.glue.util.JDBCWrapper.connectionProperties$lzycompute(JDBCUtils.scala:734)
at com.amazonaws.services.glue.util.JDBCWrapper.connectionProperties(JDBCUtils.scala:734)
at com.amazonaws.services.glue.util.JDBCWrapper.writeDF(JDBCUtils.scala:883)
at com.amazonaws.services.glue.sinks.PostgresDataSink.writeDynamicFrame(PostgresDataSink.scala:41)
at com.amazonaws.services.glue.DataSink.pyWriteDynamicFrame(DataSink.scala:65)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
INFO [Thread-9] log.GlueLogger (GlueLogger.scala:info(8)): Exception as An error occurred while calling o203.pyWriteDynamicFrame. : java.lang.Exception: Connection can not be established. Please check your JDBC url, username and password. at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$12.apply(JDBCUtils.scala:968) at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$12.apply(JDBCUtils.scala:964) at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$connectWithSSLAttempt$1$$anonfun$apply$8.apply(JDBCUtils.scala:920) at scala.Option.getOrElse(Option.scala:121) at com.amazonaws.services.glue.util.JDBCWrapper$$anonfun$connectWithSSLAttempt$1.apply(JDBCUtils.scala:920) at scala.Option.getOrElse(Option.scala:121) at com.amazonaws.services.glue.util.JDBCWrapper$.connectWithSSLAttempt(JDBCUtils.scala:920) at com.amazonaws.services.glue.util.JDBCWrapper$.connectionProperties(JDBCUtils.scala:963) at com.amazonaws.services.glue.util.JDBCWrapper.connectionProperties$lzycompute(JDBCUtils.scala:734) at com.amazonaws.services.glue.util.JDBCWrapper.connectionProperties(JDBCUtils.scala:734) at com.amazonaws.services.glue.util.JDBCWrapper.writeDF(JDBCUtils.scala:883) at com.amazonaws.services.glue.sinks.PostgresDataSink.writeDynamicFrame(PostgresDataSink.scala:41) at com.amazonaws.services.glue.DataSink.pyWriteDynamicFrame(DataSink.scala:65) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:748)
I tried to use another method but the same error as above method:
dataFrame.select(*igDataDfSchema).write.format("jdbc")\
.option("url", jdbcConfig['url']) \
.option("driver", "org.postgresql.Driver").option("dbtable", "tableName") \
.option("user", jdbcConfig['user']).option("password",jdbcConfig['password']).save()
I have trained a model in pyspark
##Model
gbt = GBTClassifier(maxIter=10)
gbtModel = gbt.fit(train)
predictions = gbtModel.transform(test)
Here I am saving pipeline and model
#Save pipeline
pipelineModel.write().overwrite().save("s3://data-production/pipelineModel_v1")
#Save Model
gbtModel.save("s3://data-production/first_trade.model_v0")
Now in production /future datasets, I am loading pipeline and model
pipelineModel = PipelineModel.load("s3://data-production/pipelineModel_v1")
new_test= pipelineModel.transform(new_df1)
model = GBTClassifier.load("s3://data-production/first_trade.model_v0")
I am getting this error after model load
Py4JJavaError: An error occurred while calling o4701.load.
: java.lang.NoSuchMethodException: org.apache.spark.ml.classification.GBTClassificationModel.<init>(java.lang.String)
at java.lang.Class.getConstructor0(Class.java:3082)
at java.lang.Class.getConstructor(Class.java:1825)
at org.apache.spark.ml.util.DefaultParamsReader.load(ReadWrite.scala:496)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
(<class 'py4j.protocol.Py4JJavaError'>, Py4JJavaError('An error occurred while calling o4701.load.\n', JavaObject id=o4702), <traceback object at 0x7f247a3eb9c8>)
The saved model is essentially a serialized version of your trained GBTClassifier. To deserialize the model you would need the original classes in the production code as well. Add this line to the set of import statements.
from pyspark.ml.classification import GBTClassifier, GBTClassificationModel
I'm trying to connect to hbase from Pyspark using SHC API by referring the below link.
https://community.hortonworks.com/questions/143802/read-hbase-with-pyspark-from-jupyter-notebook.html
Sample code:
spark = SparkSession.builder.appName("Hbase Read").getOrCreate()
data_source_format = 'org.apache.spark.sql.execution.datasources.hbase'
catalog = ''.join("""{
"table":{"namespace":"default", "name":"table"},
"rowkey":"key",
"columns":{
"firstcol":{"cf":"rowkey", "col":"key", "type":"string"},
"secondcol":{"cf":"cf", "col":"col1", "type":"int"}
}
}""".split())
df = spark.read \
.options(catalog=catalog) \
.format(data_source_format) \
.load()
df.show()
Spark-submit:
spark-submit --packages com.hortonworks:shc:1.1.1-2.1-s_2.11 --repositories http://repo.hortonworks.com/content/groups/public/ TestHbaseRead.py
i'm getting this error.
Error log:
: java.lang.ClassNotFoundException: Failed to find data source: org.apache.spark.sql.execution.datasources.hbase. Please find packages at http://spark.apache.org/third-party-projects.html
at org.apache.spark.sql.execution.datasources.DataSource$.lookupDataSource(DataSource.scala:635)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:190)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:164)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:214)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: org.apache.spark.sql.execution.datasources.hbase.DefaultSource
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$23$$anonfun$apply$15.apply(DataSource.scala:618)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$23$$anonfun$apply$15.apply(DataSource.scala:618)
at scala.util.Try$.apply(Try.scala:192)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$23.apply(DataSource.scala:618)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$23.apply(DataSource.scala:618)
at scala.util.Try.orElse(Try.scala:84)
at org.apache.spark.sql.execution.datasources.DataSource$.lookupDataSource(DataSource.scala:618)
... 13 more
I am using a fastutill ObjectArrayList[object] instead of ArrayBuffer in scala in my spark streamign applicatiuon (inside a mapwithstae function)
I use the lates version..using below sbt
libraryDependencies += "it.unimi.dsi" % "fastutil" % "7.0.13"
However, it throws an exception
yarn.ApplicationMaster: User class threw exception: java.lang.NoClassDefFoundError: it/unimi/dsi/fastutil/objects/ObjectArrayList
java.lang.NoClassDefFoundError: it/unimi/dsi/fastutil/objects/ObjectArrayList
at MapRRecoverableConsumer$$anonfun$5.apply(MapRRecoverableConsumer.scala:756)
at MapRRecoverableConsumer$$anonfun$5.apply(MapRRecoverableConsumer.scala:293)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.streaming.StreamingContext$.getOrCreate(StreamingContext.scala:864)
at MapRRecoverableConsumer$.main(MapRRecoverableConsumer.scala:863)
at MapRRecoverableConsumer.main(MapRRecoverableConsumer.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$2.run(ApplicationMaster.scala:542)
Caused by: java.lang.ClassNotFoundException: it.unimi.dsi.fastutil.objects.ObjectArrayList
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
Ok..just added as jars parameter in spark submit and it resolved that..