sed output first match only between brackets - sed

using sed, i would like to extract the first match between square brackets.
i couldn't come up with a matching regex, since it seems that sed is greedy in its regex. for instance, given the regex \[.*\] - sed will match everything between the first opening bracket and the last closing bracket, which is not what i am after (would appreciate your help on this).
but until i could come up with a regex for that, i made an assumption that there must be a space after the closing bracket, to come up with a regex that will let me continue my work \[[^ ]*\].
i have tried it with grep, e.g.
$ echo '++ *+ ++ + [SPAM] foo(): z.y.o ## [x.y.z]----- ' | grep -oE '\[[^ ]*\]'
[SPAM]
[x.y.z]
i would like to use the regex in sed (not in grep) and output the first match (i.e. [SPAM]). i have tried it as follows, but wasn't able to do that
$ echo '++ *+ ++ + [SPAM] foo(): z.y.o ## [x.y.z]----- ' | sed 's/\[[^ ]*\]/\1/'
sed: 1: "s/\[[^ ]*\]/\1/": \1 not defined in the RE
$ echo '++ *+ ++ + [SPAM] foo(): z.y.o ## [x.y.z]----- ' | sed 's/\(\[[^ ]*\]\)/\1/'
++ *+ ++ + [SPAM] foo(): z.y.o ## [x.y.z]-----
would appreciate if you could assist me in:
constructing a regex to match all text between every opening and closing square brackets (see grep example above)
use the regex in sed and output only the first occurrence of the match

You can use this sed:
s='++ *+ ++ + [SPAM] foo(): z.y.o ## [x.y.z]----- '
sed -E 's/[^[]*(\[[^]]*\]).*/\1/' <<< "$s"
[SPAM]
Here:
[^[]* match 0 or more of any non-[ character
(\[[^]]*\]) matches a [...] substring and captures in group #1
.* matches rest of the string till end
\1 in substitution puts value captured in group #1 back in output
An awk solution would be nice as well:
awk 'match($0, /\[[^]]*\]/){print substr($0, RSTART, RLENGTH)}' <<< "$s"
[SPAM]

You can use
grep -o '\[[^][]*]' <<< "$text"
sed -n 's/^[^[]*\(\[[^][]*]\).*/\1/p' <<< "$text"
See the online demo. Details:
grep -o '\[[^][]*]' - outputs only matching substrings that meet the pattern: [, then zero or more chars other than [ and ], and then a ] char
sed -n 's/^[^[]*\(\[[^][]*]\).*/\1/p':
-n - suppresses default line output
^[^[]*\(\[[^][]*]\).* - matches start of string, then zero or more chars other than [, then captures into Group 1 a [, then any zero or more chars other than [ and ] and then a ] char, and then matches the rest of the string
\1 - replaces the match with Group 1 value
p - prints the result of the replacement.

Related

sed line matching with exclamation

I am trying to understand this sed line matching part. What does it do exactly. The patters is supposed to match comment lines starting with ## and attempt to remove the comment characterrs at the front of the line.
pn_ere="^[[:space:]]*([#;!]+|#c|${cmt})[[:space:]]+"
sed -E -n "
/$beg_ere/ {
:L1
n
/$end_ere/z
/$pn_ere/!z
s/// ; p
tL1
}
"

Extract substrings between strings

I have a file with text as follows:
###interest1 moreinterest1### sometext ###interest2###
not-interesting-line
sometext ###interest3###
sometext ###interest4### sometext othertext ###interest5### sometext ###interest6###
I want to extract all strings between ### .
My desired output would be something like this:
interest1 moreinterest1
interest2
interest3
interest4
interest5
interest6
I have tried the following:
grep '###' file.txt | sed -e 's/.*###\(.*\)###.*/\1/g'
This almost works but only seems to grab the first instance per line, so the first line in my output only grabs
interest1 moreinterest1
rather than
interest1 moreinterest1
interest2
Here is a single awk command to achieve this that makes ### field separator and prints each even numbered field:
awk -F '###' '{for (i=2; i<NF; i+=2) print $i}' file
interest1 moreinterest1
interest2
interest3
interest4
interest5
interest6
Here is an alternative grep + sed solution:
grep -oE '###[^#]*###' file | sed -E 's/^###|###$//g'
This assumes there are no # characters in between ### markers.
With GNU awk for multi-char RS:
$ awk -v RS='###' '!(NR%2)' file
interest1 moreinterest1
interest2
interest3
interest4
interest5
interest6
You can use pcregrep:
pcregrep -o1 '###(.*?)###' file
The regex - ###(.*?)### - matches ###, then captures into Group 1 any zero o more chars other than line break chars, as few as possible, and ### then matches ###.
o1 option will output Group 1 value only.
See the regex demo online.
sed 't x
s/###/\
/;D; :x
s//\
/;t y
D;:y
P;D' file
Replacing "###" with newline, D, then conditionally branching to P if a second replacement of "###" is successful.
This might work for you (GNU sed):
sed -n 's/###/\n/g;/[^\n]*\n/{s///;P;D}' file
Replace all occurrences of ###'s by newlines.
If a line contains a newline, remove any characters before and including the first newline, print the details up to and including the following newline, delete those details and repeat.

How to extract a specific character inside a parentheses using sed command?

I want to extract an atomic symbols inside a parentheses using sed.
The data I have is in the form C(X12), and I only want the X symbol
EX: that a test command :
echo "C(Br12)" | sed 's/[0-9][0-9])$//g'
gives me C(Br.
You can use
sed -n 's/.*(\(.*\)[0-9]\{2\})$/\1/p'
See the online demo:
sed -n 's/.*(\(.*\)[0-9]\{2\})$/\1/p' <<< "c(Br12)"
# => Br
Details
-n - suppresses the default line output
.*(\(.*\)[0-9]\{2\})$ - a regex that matches
.* - any text
( - a ( char
\(.*\) - Capturing group 1: any text up to the last....
[0-9]\{2\} - two digits
)$ - a ) at the end of string
\1 - replaces with Group 1 value
p - prints the result of the substitution.
For example:
echo "C(Br12)" | sed 's/C(\(.\).*/\1/'
C( - match exactly literally C(
. match anything
\(.\) - match anythig - one character- and "remember" it in a backreference \1
.* ignore everything behind it
\1 - replace it by the stuff that was remembered. The first character.
Research sed, regex and backreferences for more information.
Try using the following command
echo "C(BR12)" | cut -d "(" -f2 | cut -d ")" -f1 | sed 's/[0-9]*//g'
The cut tool will split and get you the string in middle of the paranthesis.Then pass the string to a sed for replacing the numbers inside the string.
Not a fully sed solution but this will get you the output.

divide each line in equal part

I would be happy if anyone can suggest me command (sed or AWK one line command) to divide each line of file in equal number of part. For example divide each line in 4 part.
Input:
ATGCATHLMNPHLNTPLML
Output:
ATGCA THLMN PHLNT PLML
This should work using GNU sed:
sed -r 's/(.{4})/\1 /g'
-r is needed to use extended regular expressions
.{4} captures every four characters
\1 refers to the captured group which is surrounded by the parenthesis ( ) and adds a space behind this group
g makes sure that the replacement is done as many times as possible on each line
A test; this is the input and output in my terminal:
$ echo "ATGCATHLMNPHLNTPLML" | sed -r 's/(.{4})/\1 /g'
ATGC ATHL MNPH LNTP LML
I suspect awk is not the best tool for this, but:
gawk --posix '{ l = sprintf( "%d", 1 + (length()-1)/4);
gsub( ".{"l"}", "& " ) } 1' input-file
If you have a posix compliant awk you can omit the --posix, but --posix is necessary for gnu awk and since that seems to be the most commonly used implementation I've given the solution in terms of gawk.
This might work for you (GNU sed):
sed 'h;s/./X/g;s/^\(.*\)\1\1\1/\1 \1 \1 \1/;G;s/\n/&&/;:a;/^\n/bb;/^ /s/ \(.*\n.*\)\n\(.\)/\1 \n\2/;ta;s/^.\(.*\n.*\)\n\(.\)/\1\2\n/;ta;:b;s/\n//g' file
Explanation:
h copy the pattern space (PS) to the hold space (HS)
s/./X/g replace every character in the HS with the same non-space character (in this case X)
s/^\(.*\)\1\1\1/\1 \1 \1 \1/ split the line into 4 parts (space separated)
G append a newline followed by the contents of the HS to the PS
s/\n/&&/ double the newline (to be later used as markers)
:a introduce a loop namespace
/^\n/bb if we reach a newline we are done and branch to the b namespace
/^ /s/ \(.*\n.*\)\n\(.\)/\1 \n\2/;ta; if the first character is a space add a space to the real line at this point and repeat
s/^.\(.*\n.*\)\n\(.\)/\1\2\n/;ta any other character just bump along and repeat
:b;s/\n//g all done just remove the markers and print out the result
This work for any length of line, however is the line is not exactly divisible by 4 the last portion will contain the remainder as well.
perl
perl might be a better choice here:
export cols=4
perl -ne 'chomp; $fw = 1 + int length()/$ENV{cols}; while(/(.{1,$fw})/gm) { print $1 . " " } print "\n"'
This re-calculates field-width for every line.
coreutils
A GNU coreutils alternative, field-width is chosen based on the first line of infile:
cols=4
len=$(( $(head -n1 infile | wc -c) - 1 ))
fw=$(echo "scale=0; 1 + $len / 4" | bc)
cut_arg=$(paste -d- <(seq 1 $fw 19) <(seq $fw $fw $len) | head -c-1 | tr '\n' ',')
Value of cut_arg is in the above case:
1-5,6-10,11-15,16-
Now cut the line into appropriate chunks:
cut --output-delimiter=' ' -c $cut_arg infile

Can sed search & replace on a match if that match in only part of a line?

The sed below will output the input exactly. What I'd like to do is replace all occurrences of _ with - in the first matching group (\1), but not in the second. Is this possible?
echo 'abc_foo_bar=one_two_three' | sed 's/\([^=]*\)\(=.*\)/\1\2/'
abc_foo_bar=one_two_three
So, the output I'm hoping for is:
abc-foo-bar=one_two_three
I'd prefer not to resort to awk since I'm doing a string of other sed commands too, but I'll resort to that if I have to.
Edit: Minor fix to RE
You can do this in sed using the hold space:
$ echo 'abc_foo_bar=one_two_three' | sed 'h; s/[^=]*//; x; s/=.*//; s/_/-/g; G; s/\n//g'
abc-foo-bar=one_two_three
You could use awk instead of sed as follows:
echo 'abc_foo_bar=one_two_three' | awk -F= -vOFS== '{gsub("_", "-", $1); print $1, $2}'
The output would be, as expected:
abc-foo-bar=one_two_three
You could use ghc instead of sed as follows:
echo "abc_foo_bar=one_two_three" | ghc -e "getLine >>= putStrLn . uncurry (++) . (map (\x -> if x == '_' then '-' else x) *** id) . break (== '=')"
The output would be, as expected:
abc-foo-bar=one_two_three
This might work for you:
echo 'abc_foo_bar=one_two_three' |
sed 's/^/\n/;:a;s/\n\([^_=]*\)_/\1-\n/;ta;s/\n//'
abc-foo-bar=one_two_three
Or this:
echo 'abc_foo_bar=one_two_three' |
sed 'h;s/=.*//;y/_/-/;G;s/\n.*=/=/'
abc-foo-bar=one_two_three