I am unsure if Cytoscape has been updated since this was written in the protocol.. but the control panel looks significantly different than shown in the protocol and from there the "Mean log2FC". I can't find the "select" tab so I cannot move forward with the task.enter image description here
Yes, it's changed a bit, but the select tab looks the same once you get there. Look to the left-hand-side of the control panel and you'll see "Network", "Style", "Filter", and "Annotation" (and perhaps others, depending on what apps you have loaded). The select tab has been renamed "Filter", but it functions in exactly the same way. Click on Filter, and you'll get the interface that used to be called "Select".
-- scooter
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I recently, too-trustingly, upgraded my Sublime Text 3 to Version 4 (Build 4107). Now auto complete behaves completely differently. It now has a pop-up from which I must select a choice - before I would just hit tab and it would choose the best option for me (I could then tab again to try for a better answer).
A concrete example: before, when I typed a word with a typo, for example "questino", I could, with my cursor directly after the o, hit tab and it would correct it to "question" automatically. Now it doesn't do that - now it would pop up a list of any longer words, such as "questions" and "questioned", and then I would have to arrow to one of them and hit enter. It wouldn't even give me "question" as an option - I would have to backspace over the n and then hit tab in order to get a popup that included that word, because not only is the popup annoying, with it requiring multiple additional keystrokes, but autocorrect no longer corrects to a word of the same length as my currently misspelled word, only to longer ones.
There are a lot of options in Preferences, including: auto_complete, auto_complete_size_limit, auto_complete_delay, auto_complete_selector, auto_complete_triggers, auto_complete_commit_on_tab, auto_complete_with_fields, auto_complete_cycle, auto_complete_use_index, auto_complete_use_history, auto_complete_preserve_order, auto_complete_trailing_symbols, and more.
Does anyone know the precise set of preferences to make it behave exactly like it used to? Or maybe there is a package that fixes it? Or maybe my next step will be reverting to the previous version.
Thanks.
The closest you can get right now appears to be:
"auto_complete": false,
"tab_completion": true,
"mini_auto_complete": true,
This is still different from how ST3 works. Tab will fill in only a single value, pressing tab again will not toggle between options, but it won't have the distracting popup.
Background context on the forum. Hopefully this answer will be quickly invalidated by an update or plugin.
Netbeans profiler documentation says one can track only live objects and see object generations. However I don't find how to select to view only live objects, so I obtain a view with only the columns live object and live bytes.
Where can I select to view only live objects? The "console" I have is the one shown in the image
I found the solution: one must click on the down arrow on the line where "live objects" and "live bytes" are, then select some classes, and then "Track only live objects" will appear, giving the possibility to show objects generations from the same down arrow as before
Good question.
The following may be same as you describe, but to be clearer:
Click on the "settings" gear icon right
Go to the label Profile: on the left and click on the pulldown menu right of that label (which has a small down arrow) and choose 'Selected classes' under Focused (instrumented).
Click on the link that enables you to edit which classes are selected, and add some classes (and Apply).
The 'Track only live objects' option appears.
BTW: The NetBeans Profile docs do not make it clear what the difference is between "live" and "allocated" objects, and the column behaviour is a bit confusing.
To get the columns to reflect the live objects option/choice, even after Apply, you have to load something that populates the columns 'Live Objects' and 'Allocated Objects'. Sometimes, depending on the heap, you can see one or the other of those columns, but not both.
EDIT: Aha, it depends on the OS, too. From http://wiki.netbeans.org/ProfilerObjects
Tip: The columns can be displayed or hidden using the right corner
button in the view header by clicking the dropdown arrow (or right
clicking the header on Mac OS X).
I want to control a view , like if I select a .js type of file , a particular view should be visible else for all other type it shouldn't.
I dont want to use perspective as for just a single selection, it will be an overhead.
Please suggest me any way to achieve the same through Eclipse plug-in Development.
When you contribute the view, you either don't mention a perspective (in which case when the view is shown it defaults to the bottom right) or you use the org.eclipse.ui.perspectiveExtensions extension point to contribute it to a specific location. You can make it visible or invisible by default.
You make the view visible/invisible at runtime using the org.eclipse.ui.IWorkbenchCommandConstants.VIEWS_SHOW_VIEW command and the view ID parameter, or by using the showView()/hideView() API in org.eclipse.ui.IWorkbenchPage
See Plugging into the Workbench for more information.
I've added some functionality to the standard Eclipse "compare view" via a handler which is activated on the Compare view's popup (context) menu. One of the things that this handler does is add a marker at the selection location. However, markers are not shown in the compare view. How can I enhance the compare view to show markers? Do I have to build my own view?
The compare editor is really different from the standard editors, every functionality has to be reimplemented for it. You have to code it yourself (as far as I know), but you can look at the implementation of the original editor for hints.
In case of Eclipse, AbstractDecoratedTextEditor implements the marker display functionality (that is a descendant of the TextEditor class). What makes this functionality hard to implement in case of Compare editors is the fact, that the compare editor opens two resources at once, so it is harder to put every marker into its correct place (I think that's why it is not implemented generically).
Is there any way to remove binary references from "call hierarchy" (Ctrl-Alt-H) ?
Our project setup is such that for many members we have duplicated references (one reference from source file and one from the jar file with class compiled from that source file). The navigation is inconvenient and I wondering if any ways to fix that is available.
Call hierarchy can be limited in scope to a working set. You just need to set one up to exclude all your libraries.
If you click on the white down arrow in the top right of the Call Hierarchy window a popup menu will appear. Choose Search Scope/Working set and then select or set up the working set you want. A working set can include a source folder or a jar. Once set up your working sets will appear at the bottom of the Search Scope menu so you can access them quickly in future.
I've discovered another way to accomplish this, and since this question is one of the top results in google, I thought it would be good to add it as an answer.
In the Call Hierarchy view, one can click the 'View Menu' (the downward facing arrow) and select "Search In...". In the window that pops up, the user can un-check the options they want to exclude. For example, I only have 'Sources' and 'Required projects' checked.