I am trying to use some pg_dump generated migration scripts with Flyway. The first migration script is for schema only. The other migration scripts load seed data into various tables using the Postgres COPY command. These seed-data scripts are going to exist as Flyway repeatable migration scripts. This setup presents two issues.
When Flyway loads the seed data from the migration scripts, I'm getting foreign key constraint violations since I don't have the various tables being seeded in the correct order. There are a large number of tables to deal with, so is there an easy way to work around this so that I don't have to try to reorder my COPY's?
Since the seed data is going to be in repeatable migration scripts, these need to be idempotent. Is there a way to do this with the Postgres COPY command? I'm trying to avoid having to convert this to INSERTs since it will hurt performance and also make my migrations files huge.
The trick here for idempotency is to delete the data from the files in the correct dependency order, and when you've done that, to likewise load the data in the correct dependency order. The correct dependency order for deleting the data is worked out by obtaining the target tables for every foreign key constraint and ensuring that no data from a table is ever deleted when it is the target of a table whose data is yet to be deleted. This list of tables in dependency order is usually called a 'manifest' and is required also for CREATE statements and for the PgSQL COPY. The Public domain PowerShell-based Flyway Teamworks framework will create the manifest for you.
Related
I need to implement schema migration mechanism for PostgreSQL.
Just to remove ambiguity: with schema-migration I mean that I need upgrade my database structures to the latest version regardless of their current state on particular server instance.
For example in version one I created some tables, then in version two I renamed some columns and in version three I removed one table and created another one. I have multiple servers and on some of them I have version one on some version three etc.
My idea:
Generate hash for output produced by
pg_dump --schema-only
every time before I change my database schema. This will be a reliable way to identify database version in the future to which the patch should apply.
Contain a list of patches with the associated hashed to which they should apply.
When I need to upgrade my database I will run an application that will search for hash that corresponds to current database structure (by calculating hash of local database and comparing it with hash set that I have) and apply associated patch.
Repeat until next hash is not found.
Could you please point any weak sides of this approach?
Have you ever heard of https://pgmodeler.io ? At the company where I work we decided to go for this since it can perform schema diff even between local and remote. We are very satisfied with it.
Otherwise if you are more for a free solution, you could develop a migration tool which can be used to apply migrations you store in a single repo. Furthermore this tool could rely on a migration table you keep in a separate schema so that your DB(s) will always know which migrations were applied or not.
The beauty of this approach is that migrations can both be about a schema change and data changes.
I hope this can give you some ideas.
I'm currently working on dumping one of our customer's database in a way that allows us to create new databases from this customer's basic structure, but without bringing along their private data.
So far, I've had success with pg_dump combined with the --exclude_table and exclude-table-data commands, which allowed me to bring only the data I'll effectively need for this task.
However, there are a few tables that mix lines which references some of the data I left behind with other lines that references data that I had to bring, and this is causing me a few issues during the restore operation. Specifically, when the dump tries to enforce FOREIGN KEY constraints for certain columns on these tables, it fails because there are some lines with keys that have no matching data on the respective foreign table - because I chose to not bring this table's data!
I know I can log into the database after the dump is complete, delete any rows that reference data that no longer exists and create the constraint myself, but I'd like to automate the process as much as possible. Is there a way to tell pg_dump or pg_restore (or any other program) to not bring rows from table A if they reference table B if and table B's data was excluded from the backup? Or to tell Postgres that I'd like to have that specific foreign key to be active before importing the table's data?
For reference, I'm working with PostgreSQL 9.2 on a HREL 7 server.
What if you disable foreign key checking when you restore your database dump? And after that remove lonely rows from the referring table.
By the way, I recommend you to fix you database schema so there is no chance wrong tuples being inserted into your database.
There are a few questions and answers already on PostgreSQL import (as well as the specific SQLite->PostgreSQL situation). This question is about a specific corner-case.
Background
I have an existing, in-production web-app written in python (pyramid) and using alembic for easy schema migration. Due to the database creaking with unexpectedly high write-load (probably due to the convoluted nature of my own code), I've decided to migrate to PostgreSQL.
Data migration
There are a few recommendations on data migration. The simplest one involved using
sqlite3 my.db .dump > sqlitedumpfile.sql
and then importing it with
psql -d newpostgresdb < sqlitedumpfile.sql
This required a bit of editing of sqlitedumpfile. In particular, removing some incompatible operations, changing values (sqlite represents booleans as 0/1) etc. It ended up being too complicated to do programmatically for my data, and too much work to handle manually (some tables had 20k rows or so).
A good tool for data migration which I eventually settled on was pgloader, which 'worked' immediately. However, as is typical for data migration of this sort, this exposed various data inconsistencies in my database which I had to solve at source before doing the migration (in particular, removing foreign keys to non-unique columns which seemed a good idea at the time for convenient joins and removing orphan rows which relied on rows in other tables which had been deleted). After these were solved, I could just do
pgloader my.db postgresql:///newpostgresdb
And get all my data appropriately.
The problem?
pgloader worked really well for data but not so well for the table structure itself. This resulted in three problems:-
I had to create a new alembic revision with a ton of changes (mostly datatype related, but also some related to problem 2).
Constraint/index names were unreliable (unique numeric names generated). There's actually an option to disable this, and this was a problem because I needed a reliable upgrade path which was replicable in production without me having to manually tweak the alembic code.
Sequences/autoincrement just failed for most primary keys. This broke my webapp as I was not able to add new rows for some (not all) databases.
In contrast, re-creating a blank database using alembic to maintain the schema works well without changing any of my webapps code. However pgloader defaults to over-riding existing tables, so this would leave me nowhere as the data is what really needs migrating.
How do I get proper data migration using a schema I've already defined (and which works)?
What eventually worked was, in summary:-
Create the appropriate database structure in postgresql://newpostgresdb (I just used alembic upgrade head for this)
Use pgloader to move data over from sqlite to a different database in postgresql. As mentioned in the question, some data inconsistencies need to be solved before this step, but that's not relevant to this question itself.
createdb tempdb
pgloader my.db postgresql:///tempdb
Dump the data in tempdb using pg_dump
pg_dump -a -d tempdb > dumped_postgres_database
Edit the resulting dump to accomplish the following:-
SET session_replication_role = replica because some of my rows are circular in reference to other rows in the same table
Delete the alembic_version table, as we're restarting a new branch for alembic.
Regenerate any sequences, with the equivalent of SELECT pg_catalog.setval('"table_colname_seq"', (select max(colname) from table));
Finally, psql can be used to load the data to your actual database
psql -d newpostgresdb < dumped_postgres_database
I'm trying to migrate our database engine from MsSql to PostgreSQL. In our automated test, we restore the database back to "clean" state at the start of every test. We do this by comparing the "diff" between the working copy of the database with the clean copy (table by table). Then copying over any records that have changed. Or deleting any records that have been added. So far this strategy seems to be the best way to go about for us because per test, not a lot of data is changed, and the size of the database is not very big.
Now I'm looking for a way to essentially do the same thing but with PostgreSQL. I'm considering doing the exact same thing with PostgreSQL. But before doing so, I was wondering if anyone else has done something similar and what method you used to restore data in your automated tests.
On a side note - I considered using MsSql's snapshot or backup/restore strategy. The main problem with these methods is that I have to re-establish the db connection from the app after every test, which is not possible at the moment.
If you're okay with some extra storage, and if you (like me) are particularly not interested in re-inventing the wheel in terms of checking for diffs via your own code, you should try creating a new DB (per run) via templates feature of createdb command (or CREATE DATABASE statement) in PostgreSQL.
So for e.g.
(from bash) createdb todayDB -T snapshotDB
or
(from psql) CREATE DATABASE todayDB TEMPLATE snaptshotDB;
Pros:
In theory, always exact same DB by design (no custom logic)
Replication is a file-transfer (not DB restore). So far less time taken (i.e. doesn't run SQL again, doesn't recreate indexes / restore tables etc.)
Cons:
Takes 2x the disk space (although template could be on a low performance NFS etc)
For my specific situation. I decided to go back to the original solution. Which is to compare the "working" copy of the database with "clean" copy of the database.
There are 3 types of changes.
For INSERT records - find max(id) from clean table and delete any record on working table that has higher ID
For UPDATE or DELETE records - find all records in clean table EXCEPT records found in working table. Then UPSERT those records into working table.
I've got a problem with a PostgreSQL dump / restore. We have a production appliaction running with PostgresSQL 8.4. I need to create some values in the database in the testing environment and then import just this chunk of data into the production environment. The data is generated by the application and I need to use this approach because it needs testing before going into production.
Now that I described the environment, here is my problem:
In the testing database, I leave nothing but the data I need to move to the production database. The data is spread across multiple tables linked with foreign keys with multiple levels (like a tree). I then use pg_dump to export the desired tables into binary format.
When I try to import, the database will correctly import the root table entries with new primary key values, but does not import any of the data from the other tables. I believe that the problem is that foreign keys on child tables no longer recognizes the new primary keys.
Is there a way to achieve such an import which will update all the primary key values of all affected tables in the tree to correct serial (auto increment) values automatically and also update all foreign keys according to these new primary key values?
I have and idea how to do this with assistance of programming language while connected to both databases, but that would be very problematic to achieve for me since I don't have direct access to customers production server.
Thanks in advance!
That one seems to me like a complex migration issue. You can create PL/pgSQL migration scripts with inserts and use returning to get serials and use as foreign keys for other tables up the tree. I do not know the structure of your tree but in some cases reading sequence values in advance into arrays may be required due to complexity or performance reasons.
Other approach can be to examine production sequence values and estimate sequence values that will not be used in the near future. Fabricate test data in the test environment to have serial values that will not collide with production sequence values. Then load that data into the prod database and adjust sequence values of the prod environment so that test sequence values will not be used. It will leave a gap in your ID sequence so you must examine whether anything (like other processes) rely on the sequence values to be continuos.