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When I used the matlab function 'niftiinfo',Error using affine3d Can't reload '/usr/local/MATLAB/R2018b/bin/glnxa64/libmwcoder_types.so'
First off, make sure the Java JRE is installed:
sudo apt-get install openjdk-8-jre
Secondly, it may be possible that some dependent libraries for libmwcoder_types.so are missing in the system. Check if all the dependencies are present for this library by performing the following steps:
Check for missing libraries in the output
cd /usr/local/MATLAB/R2018b/bin/glnxa64
ldd libmwcoder_types.so
For example:
libXt.so.6 => not found
libXext.so.6 => not found
Install the missing libraries
If there are no missing dependencies, create a directory named exclude within /usr/local/MATLAB/R2018b/bin/glnxa64/ and put libmwcoder_types.so in it.
Related
I have this library(lxc) installed which has the .pc file in
/usr/local/lib/pkgconfig I'm working on a modified version of CentOS. Apparantly, I'm having pkg-conf package (instead of pkg-config). When I try to install a package which has dependencies on this library, on running cmake .., I get the error Package 'lxc' required by 'virtual:world', not found /usr/share/cmake/Modules/FindPkgConfig.cmake:467(message): A required package was not found . Now when I do
pkg-config --variable pc_path pkg-config
it shows /usr/lin64/pkgconfig:/usr/share/pkgconfig. So I need to add the /usr/local/lib/pkgconfig to the search path. However, this does not seem straightforward. The general recommended solution is to add this path using export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig. However, this does not work. I also tried adding a file local.conf in the folder /etc/ld.so.conf.d with the content as /usr/local/lib/pkgconfig but this doesn't help either. Searching the man page of pkg_conf here https://man.archlinux.org/man/pkgconf.1.en , I also tried doing export $CMAKE_PREFIX_PATH=/usr/local/lib/pkgconfig, which also doesn't help. I'm a bit out of ideas at this point and would be really grateful if someone could provide an insight.
First I have installed all the dependent packages including atk 2.18.
Then, I have added them to path.
# echo $LD_LIBRARY_PATH
/opt/gtk_+3.12-RHEL6/dependencies/at-spi2-atk/lib:/opt/gtk_+3.12-RHEL6/dependencies/gobject-introspection/lib:/opt/gtk_+3.12-RHEL6/dependencies/pango/lib:/opt/gtk_+3.12-RHEL6/dependencies/harfbuzz/lib:/opt/gtk_+3.12-RHEL6/dependencies/freetype/lib:/opt/gtk_+3.12-RHEL6/dependencies/icu4c/lib:/opt/gtk_+3.12-RHEL6/dependencies/cairo/lib:/opt/gtk_+3.12-RHEL6/dependencies/fontconfig/lib:/opt/gtk_+3.12-RHEL6/dependencies/libpng/lib:/opt/gtk_+3.12-RHEL6/dependencies/pixman/lib:/opt/gtk_+3.12-RHEL6/dependencies/atk/lib:/opt/gtk_+3.12-RHEL6/dependencies/gdk-pixbuf/lib:/opt/gtk_+3.12-RHEL6/dependencies/GLib/lib:
# echo $PATH
/opt/gtk_+3.12-RHEL6/dependencies/gobject-introspection/bin:/opt/gtk_+3.12-RHEL6/dependencies/pango/bin:/opt/gtk_+3.12-RHEL6/dependencies/harfbuzz/bin:/opt/gtk_+3.12-RHEL6/dependencies/freetype/bin:/opt/gtk_+3.12-RHEL6/dependencies/which/bin:/opt/gtk_+3.12-RHEL6/dependencies/icu4c/sbin:/opt/gtk_+3.12-RHEL6/dependencies/icu4c/bin:/opt/gtk_+3.12-RHEL6/dependencies/cairo/bin:/opt/gtk_+3.12-RHEL6/dependencies/fontconfig/bin:/opt/gtk_+3.12-RHEL6/dependencies/libpng/bin:/opt/gtk_+3.12-RHEL6/dependencies/gdk-pixbuf/bin:/opt/gtk_+3.12-RHEL6/dependencies/GLib/bin:/opt/python_2_7_11/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin
# echo $PKG_CONFIG_PATH
/opt/gtk_+3.12-RHEL6/dependencies/at-spi2-atk/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/gobject-introspection/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/pango/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/harfbuzz/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/freetype/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/icu4c/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/cairo/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/fontconfig/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/libpng/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/pixman/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/atk/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/gdk-pixbuf/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies/GLib/lib/pkgconfig:/opt/gtk_+3.12-RHEL6/dependencies
But, when I try to run ./configure, I am getting the following error:
checking for ATK... no
configure: error: Package requirements (atk atk-bridge-2.0) were not met:
No package 'atk-bridge-2.0' found
Consider adjusting the PKG_CONFIG_PATH environment variable if you
installed software in a non-standard prefix.
Alternatively, you may set the environment variables ATK_CFLAGS
and ATK_LIBS to avoid the need to call pkg-config.
atk 2.18 is cleary added in the PKG_CONFIG_PATH and also LD_LIBRARY_PATH.
So, I though atk-bridge-2.0 is separate and found the packag: at-spi2-atk and at-spi2-core. But, no atk-bridge-2.0 is installed.
Please help.
The atk-bridge-2.0 API is provided by at-spi2-atk, not by ATK.
Your build environment is fairly broken, and it seems you're installing each component into its own prefix. You shouldn't. Create a temporary build root, and add that to $PATH, $PKG_CONFIG_PATH, $LD_LIBRARY_PATH, and $XDG_DATA_DIRS. Then, use the same prefix for every component.
You should look at how jhbuild works.
How do I install Helm (https://hackage.haskell.org/package/helm) on Windows 7 (64-bit)?
(Update: I had posted a lot of error messages here, but I've moved them to my answer to not clutter up the question.)
Installation for Windows 64-bit:
I'm including error messages, for if you follow all the steps up to that point and then just try to install directly. This is a conglomeration of a bunch of ad-hoc steps from following many different posts. Any simplification would be appreciated!
Note: Do all work in directories without spaces. I'm doing all work in C:/PF; modify this to your directory.
Download MSYS2-x86_64 from https://msys2.github.io/ and install it. Cabal install cairo (or helm) will give something like:
Configuring cairo-0.13.1.0...
setup.exe: Missing dependencies on foreign libraries:
Missing C libraries: z, cairo, z, gobject-2.0, ffi, pixman-1, fontconfig,
expat, freetype, iconv, expat, freetype, z, bz2, harfbuzz, glib-2.0, intl,
ws2_32, ole32, winmm, shlwapi, intl, png16, z
Download C libraries. In MINGW64 (NOT MSYS2 - I had trouble with MSYS2 at random stages in the process), use the package manager:
pacman -Ss cairo
to search for the Cairo package. You'll find "mingw64/mingw-w64-x86_64-cairo", so install that:
pacman -S mingw64/mingw-w64-x86_64-cairo
*.pc files should have been added to C:\PF\msys64\mingw64\lib\pkgconfig and C:\PF\msys64\usr\lib\pkgconfig. (pkg-config needs to be able to find these files. It looks in PKG_CONFIG_PATH, which by default should have the lib/pkgconfig folder above. Moving the file here is easiest. See Can't install sdl2 via cabal) If you get
The pkg-config package ... version ... cannot be found
errors then check your *.pc files.
Repeat with other required libraries, like atk
pacman -S mingw64/mingw-w64-x86_64-atk
(I don't know the complete list, but error messages later on will let you know what to get.)
Get the development files for these libraries (as suggested by How to install cairo on Windows). Most of them are bundled up at http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/. Unzip.
Copy files (.a, .dll.a) in lib to C:\PF\msys64\mingw64\lib. Copy the pkgconfig folder, which contains the .pc files.
Copy files in include to C:\PF\msys64\mingw64\include.
Add C:\PF\gtk+-2.22.1\bin to the path.
(2) and (3) might be redundant. I don't know - I did them both.
At this point you can probably do "cabal install cairo". (Warning: if your end goal is something else, you may not want to "cabal install" intermediate packages, see https://wiki.haskell.org/Cabal/Survival#Issue_.232_--_Not_installing_all_the_packages_in_one_go.)
See (4) for the syntax in specifying extra-include-dirs and extra-lib-dirs (but if you copied the files above this shouldn't be necessary),
Any time you get
Missing (or bad) header file
check to see you copied the *.h files to mingw64\include and/or add the include folder to the PATH. Use cabal install -v3 to get verbose error messages if the problem persists.
If you get something like
cairo-0.13.1.0: include-dirs: /mingw64/include/freetype2 is a relative path
which makes no sense (as there is nothing for it to be relative to). You can
make paths relative to the package database itself by using ${pkgroot}. (use
--force to override)
try --ghc-pkg-options="--force" (as mentioned at https://github.com/gtk2hs/gtk2hs/issues/139).
Get SDL. Otherwise you'll get
configure: error: *** SDL not found! Get SDL from www.libsdl.org.
If you already installed it, check it's in the path. If problem remains,
please send a mail to the address that appears in ./configure --version
indicating your platform, the version of configure script and the problem.
Failed to install SDL-0.6.5.1
Follow the instructions in (2) to get sdl/sdl2 libraries. (See instructions here Installing SDL on Windows for Haskell (GHC).)
The new version helm-0.7.1 requires sdl2, but there are other dependency issues with helm-0.7.1 as of writing. Download SDL from http://sourceforge.net/projects/msys2/files/REPOS/MINGW/x86_64/ (direct download link to newest version as of writing http://sourceforge.net/projects/msys2/files/REPOS/MINGW/x86_64/mingw-w64-x86_64-SDL-1.2.15-7-any.pkg.tar.xz.sig/download), unzip. "cabal install sdl" gives
* Missing (or bad) header file: SDL/SDL.h
* Missing C library: SDL
This problem can usually be solved by installing the system package that
provides this library (you may need the "-dev" version). If the library is
already installed but in a non-standard location then you can use the flags
--extra-include-dirs= and --extra-lib-dirs= to specify where it is.
so we specify where the dirs are (change the name depending on where you extracted sdl to)
cabal install sdl --extra-include-dirs=C:/PF/sdl\include --extra-lib-dirs=C:/sdl/lib
If you got SDL2 (http://libsdl.org/download-2.0.php) (for a newer version of Helm): there is a fatal bug that hasn't been fixed in the release version. (If you don't fix it, cabal install -v3 things which depends on it will give error
winapifamily.h: No such file or directory
("winapifamily.h: No such file or directory" when compiling SDL in Code::Blocks) Download https://hg.libsdl.org/SDL/raw-file/e217ed463f25/include/SDL_platform.h, replace the file in the include folder and in C:/PF/msys64/mingw64/include/SDL2.
Download gtk2hs from http://code.haskell.org/gtk2hs and run
the following
cd gtk2hs/tools
cabal install
cd ../glib
cabal install
cd ../gio
cabal install
cd ../pango
cabal install --ghc-pkg-options="--force"
(Maybe you have already installed glib and gio from before? I did this step because normal install of Pango caused an error for me (https://github.com/gtk2hs/gtk2hs/issues/110)
pango-0.13.1.0: include-dirs: /mingw64/include/freetype2 is a relative path
which makes no sense (as there is nothing for it to be relative to). You can
make paths relative to the package database itself by using ${pkgroot}. (use
--force to override)
Once the Helm developers get things updated you should be able to do "cabal install helm" but right now there seem to be dependency issues. For me, cabal automatically tries to install helm-0.4 (probably because 0.4 didn't give upper bounds on dependencies, while newer versions do. You could try "cabal unpack"ing and deleting the upper bounds...). Then
cabal unpack helm-0.4
Installing gives an error because "pure" got moved to Prelude. Open helm-0.4\src\FRP\Helm\Automaton.hs and change line 17:
import Prelude hiding (id, (.), pure)
Now
cabal install
Try to compile and run a program using Helm
(This is 0.4 - look on the website for a newer sample if you tried a newer Helm)
import FRP.Helm
import qualified FRP.Helm.Window as Window
render :: (Int, Int) -> Element
render (w, h) = collage w h [filled red $ rect (fromIntegral w) (fromIntegral h)]
main :: IO ()
main = run $ fmap (fmap render) Window.dimensions
If you get an error about a missing .dll (sdl.dll), find it in a bin/ folder and add the folder to your PATH (or copy it to somewhere on your path).
I'm trying to build a toolchain for my hobby kernel, but I'm running into problems when building Newlib. Whenever I try to run autoreconf in my kernels directory under newlib/libc/sys/ I get an error:
configure.in:5: error: support for Cygnus-style trees has been removed
Here is the content of configure.in (basically, taken from the below tutorial):
AC_PREREQ(2.59)
AC_INIT([newlib], [NEWLIB_VERSION])
AC_CONFIG_SRCDIR([crt0.S])
AC_CONFIG_AUX_DIR(../../../..)
NEWLIB_CONFIGURE(../../..)
AC_CONFIG_FILES([Makefile])
AC_OUTPUT
and the source for Makefile.am (again mostly from tutorial):
AUTOMAKE_OPTIONS = cygnus
INCLUDES = $(NEWLIB_CFLAGS) $(CROSS_CFLAGS) $(TARGET_CFLAGS)
AM_CCASFLAGS = $(INCLUDES)
noinst_LIBRARIES = lib.a
if MAY_SUPPLY_SYSCALLS
extra_objs = $(lpfx)syscalls.o
else
extra_objs =
endif
lib_a_SOURCES =
lib_a_LIBADD = $(extra_objs)
EXTRA_lib_a_SOURCES = syscalls.c crt0.S
lib_a_DEPENDENCIES = $(extra_objs)
lib_a_CCASFLAGS = $(AM_CCASFLAGS)
lib_a_CFLAGS = $(AM_CFLAGS)
if MAY_SUPPLY_SYSCALLS
all: crt0.o
endif
ACLOCAL_AMFLAGS = -I ../../..
CONFIG_STATUS_DEPENDENCIES = $(newlib_basedir)/configure.host
Yes, I have tried removing the AUTOMAKE_OPTIONS=cygnus.
I've Googled around and been trying to understand this, and as far as I can tell, it is because of the version of autotools I'm using. According to the tutorial I used originally (OSDev - OS Specific Toolchain), I need an older version. My problem is that I'm using Kubuntu, which uses the apt package manager, and that version is not available to fall back to even temporarily. There has to be some fix for this. Either Newlib is outdated (this release is from December of 2013...) or the developers are crazy for depending on an outdated autotools version.
The only other thing I can think is that this is a message from the newlib configuration scheme itself in which case I have no idea how to modify my configure.in and Makefile.am to align with the new newlib configure format. That tutorial is the only one I've found that didn't use libgloss (which I'd prefer not to do) so far and the documentation of adding a new target is rather lacking in the documentation for newlib (or I missed something).
Here is some version information:
System: Kubuntu 14.04
Automake: 1.14.1
Autoconf: 2.69
Newlib: 2.1.0
Unfortunately I'm afraid using automake 1.12 or earlier is your only choice. Ubuntu has an Automake1.11 separate package to help you there, if I'm not mistaken, since the compatibility between 1.12 and 1.14 is generally good, but before that it was spotty.
I am writing this answer for people struggling with the tutorial described here.
I am in the same situation you are (or were), I am building a kernel from scratch and I wanted to port newlib to my toolchain. Unfortunately I think the tutorial has become out of date because I followed the instructions EXACTLY, even installing the correct software with the proper versions (including the correct newlib version). The accepted solution above didn't work for me but I found another solution that might work for others:
Step 1 - get the correct software
Acquire Automake (v1.12) and Autoconf (v2.65) from here:
http://ftp.gnu.org/gnu/automake/automake-1.12.tar.gz
http://ftp.gnu.org/gnu/autoconf/autoconf-2.65.tar.gz
Step 2 - build process
Untar both of the archives:
tar xf automake-1.12.tar.gz
tar xf autoconf-2.65.tar.gz
Create a destination folder:
mkdir ~/bin
Create a build folder:
mkdir build
cd build
Configure automake first:
../automake-1.12/configure --prefix="~/bin"
Make and install
make && make install
Now lets configure autoconf
../autoconf-2.65/configure --prefix=~/bin
Then make and install:
make && make install
You should now have the proper binaries in ~/bin!
Step 3 - update PATH
To add these binaries to your path temporarily (recommended):
export PATH=~/bin:$PATH
Once you update your path, rerun autoconf and autoreconf and it should complete.
I've given the required environment variable which are given below answer I'm compiling it with following code:
./configure --prefix="/home/qemu/support_libs/libs/glib"
export CFLAGS="-I`pwd`/../../support_libs/libs/gettext/include"
export LIBFFI_CFLAGS="-I`pwd`/../../support_libs/libs/libffi/lib/libffi-3.0.13/include"
export LIBFFI_LIBS="-L`pwd`/../../support_libs/libs/libffi/lib -lffi"
export ZLIB_CFLAGS="-I`pwd`/../../support_libs/libs/zlib/include"
export ZLIB_LIBS="-L`pwd`/../../support_libs/libs/zlib/lib -lz"
export LD_LIBRARY_PATH="`pwd`/../../support_libs/libs/gettext/lib:`pwd`/../..
/support_libs/libs/zlib/lib"
LDFLAGS="-L`pwd`/../../support_libs/libs/gettext/lib"
I have taken care of necessary dependecy but I'm getting this error
You must have either have gettext support in your C library, or use the
*** GNU gettext library. (http://www.gnu.org/software/gettext/gettext.htm
Make sure libintl installed, and that glib can find it.
The macro to you need to satisfy is GLIB_GNU_GETTEXT, defined at https://git.gnome.org/browse/glib/tree/m4macros/glib-gettext.m4#n308
every thing is ok .. but the binary for which gettext is looking for(msgfmt) is in the bin directory of gettext(gettext/bin). so all we need to do is to add this bin path in PATH environment variable.
After this everything works fine.