Matlab plot to ignore underscores? [duplicate] - matlab

This question already has answers here:
Matlab labeling, plots, legends
(2 answers)
Closed 4 months ago.
I have lots of file names that are labelled in the form:
test1_cvariable1_cvariable2_rvariable.csv
To load and process them all automatically I'm using the code:
%filename
txt = ['test1_cvariable1_cvariable2_rvariable.csv']
%step 1
RNG = [23 0 1539 8];
M = csvread(txt,23,0,RNG);
I'd like to then plot a graph with the corresponding title, but owing to how matlab interprets underscores "_" if I use:
%plot time vs variable
plot(M(:,1),M(:,8))
xlabel('Time (s)')
ylabel('Var')
title(['Var ' txt])
Gives a title in the form
test1cvariable1cvariable2rvariable
with the c,c & r as subscripts (apologies idk how to do this here, ironically)
How do I get Matlab to not make the character immediately after the underscore as a subscript?

You can set the Interpreter property to ‘none’ to disable MATLAB’s usual default which is ‘TeX’. This works for most plotting text functions like title, xlabel, or ylabel.
For example:
title('savvy_iguana', 'Interpreter', 'none')

You have to replace _ with \_ (see this mathworks answer). You can do it automatically using strrep:
title(['Var ' strrep(txt,'_','\_')])

Related

Endash for minus sign instead of hyphen for matlab

So here's my code:
set(groot, 'defaultAxesTickLabelInterpreter', 'latex') %For axes;
ax = gca;
yticklabels(ax, strrep(yticklabels(ax),'--','–'));
set(ax,'ticklabelinterpreter','tex') %or 'tex' but not 'latex'
figure(1)
t= [0:0.01:2*pi];
x = sin(t);
y = cos(t)
plot(t, x, t, y)
Output:
I tried the solution here, but the hyphens still remain there. I want the en-dash to appear because it's the standard sign for the negative sign. What is the correct way of getting an en-dash to appear instead of the hyphen?
This post at MATLAB Answers explains how to set the (default) interpreter for the axes' labels.
set(groot,'defaultAxesTickLabelInterpreter','latex');
You need to call this before plotting.
Having this set, the tick-labels will be interpreted as LaTeX code. Here is a comparison. The last two examples includes #XiangruiLi's answer (the next code snippets must be called after the plot was created):
yticklabels(gca, strrep(yticklabels(gca),'-','--'));
yticklabels(gca, strrep(yticklabels(gca),'-','$-$'));
none:
latex:
latex + strrep(...,'-','--')):
latex + strrep(...,'-','$-$')):
While the last is probably what you wanted, note that this is certainly not the representation MATLAB intended. It is therefore the question if you really need/want to go through this fuzz.
It seems to me you mis-used strrep. This worked for me:
yticklabels(ax, strrep(yticklabels(ax),'-','--'));
Using the actual Unicode minus character should also work (also in Octave):
yticklabels(gca, strrep(yticklabels(gca),'-','−'));
In this case, there is no need to set the interpreter to LaTeX.

plotting results from different files into on figure by using different colors [duplicate]

This question already has answers here:
Plot different colors
(2 answers)
Closed 5 years ago.
I have some log files and in these log files there are some timestamps from different smartphones. I plotted each log file into different figures. Lets say there are 3 smartphones and each has a specific number like 10, 11, 12 and each smartphone's result keeps in one log file.
Basically what I want to do is, showing the results of these three log files into one figure by using different colors for each log file. Is there anyone who knows how to do it?
EDIT
n=size(allTimeStamps{1},2);
figure(1);
hold on;
for i=1:n
plot(allTimeStamps{1}{i},mod(allTimeStamps{1}{i},0.3),'Color',colorspec{indexOfFile});
end
title(logFileName);
You can use the function lines to get the default colors of Matlab in order. This function creates a matrix of n-by-3 that each row within is a new color. However this is good up to 7 colors, otherwise, you can choose another colormap, or use this suggestion.
Here is an example:
data = reshape(1:99,[],3); % some arbitrary data
n = size(data,2);
figure;
hold on;
col = lines(n);
for k = 1:n
plot(data(:,k),'Color',col(k,:));
end
hold off
(This code is only for demonstrating, in this specific case you don't even need a loop, because plot(data) will give the same result)

How to dump variables as MATLAB source code?

Is there a way to dump a MATLAB variable as the source code for the corresponding literal initializer? IOW, I'm looking for some function x such that, for example:
>> A = zeros(2);
>> x(A)
ans =
[0 0; 0 0]
>> class(x(A))
ans =
char
Is there such a function, or an easy way to achieve the same effect? (I realize that literal initializers may not exist for some MATLAB items; for such items the problem is intrinsically unsolvable.)
I am aware of the fact that MATLAB offers many ways to save data to files, but none of the ways I've found produce MATLAB source code, which is what I'm after.
For simple numeric values (and also char arrays), the mat2str function does what you're looking for.
For example, (from the MATLAB documentation):
Consider the matrix
x = [3.85 2.91; 7.74 8.99]
x =
3.8500 2.9100
7.7400 8.9900
The statement
A = mat2str(x)
produces
A =
[3.85 2.91;7.74 8.99]
where A is a string of 21 characters, including the square brackets, spaces, and a semicolon.
Further, passing the string 'class' as the second argument ensure that the answer will be case to the correct numeric type.
See the MATLAB documentation for mat2str, or run
doc mat2str
in MATLAB, for more information.
I know you are looking for a function that can do this, rather than an interactive procedure, but for anyone else who wants to do this manually...
The MATLAB variable editor/viewer has built-in code generation functionality. Open the variable in the editor, click the save icon, and choose MATLAB Script (*.m) file type (default is .mat):
The resulting MatrixCode.m:
% -------------------------------------------------------------------
% Generated by MATLAB on 3-Mar-2014 17:35:49
% MATLAB version: 8.3.0.73043 (R2014a)
% -------------------------------------------------------------------
M = ...
[16 2 3 13;
5 11 10 8;
9 7 6 12;
4 14 15 1];
Maybe someone with Java and reverse engineering skills can figure out how to call this GUI operation from the command line.
As Sam Roberts commented, matlab.io.saveVariablesToScript is now the ultimate method to convert any datatype to a script. This method was introduced in 2014a and works for struct, cell, and all primitive datatypes.
chappjc's method is also correct, but it uses a MATLAB GUI frontend to the saveVariablesToScript method.

MATLAB question: quote value of variables in the tile of a plot [duplicate]

This question already has answers here:
Closed 11 years ago.
Possible Duplicate:
matlab - variable in plot title
I would like to quote the value of variables defined in the m-file in the plot such as
let us say I define
d = 1;
in the MATLAB code. I want to plot with the title such as
title('The Distribution of Some Variable when the Parameter is %d')
Please advise.
title(sprintf('The Distribution of Some Variable when the Parameter is %d', d));
title(['The Distribution of Some Variable when the Parameter is ' num2str(d)])
Brackets ['concatenate ' 'strings'] and num2str() converts a number (integer or decimal) to a string.

What is your favourite MATLAB/Octave programming trick? [closed]

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Closed 11 years ago.
Locked. This question and its answers are locked because the question is off-topic but has historical significance. It is not currently accepting new answers or interactions.
I think everyone would agree that the MATLAB language is not pretty, or particularly consistent. But nevermind! We still have to use it to get things done.
What are your favourite tricks for making things easier? Let's have one per answer so people can vote them up if they agree. Also, try to illustrate your answer with an example.
Using the built-in profiler to see where the hot parts of my code are:
profile on
% some lines of code
profile off
profile viewer
or just using the built in tic and toc to get quick timings:
tic;
% some lines of code
toc;
Directly extracting the elements of a matrix that satisfy a particular condition, using logical arrays:
x = rand(1,50) .* 100;
xpart = x( x > 20 & x < 35);
Now xpart contains only those elements of x which lie in the specified range.
Provide quick access to other function documentation by adding a "SEE ALSO" line to the help comments. First, you must include the name of the function in all caps as the first comment line. Do your usual comment header stuff, then put SEE ALSO with a comma separated list of other related functions.
function y = transmog(x)
%TRANSMOG Transmogrifies a matrix X using reverse orthogonal eigenvectors
%
% Usage:
% y = transmog(x)
%
% SEE ALSO
% UNTRANSMOG, TRANSMOG2
When you type "help transmog" at the command line, you will see all the comments in this comment header, with hyperlinks to the comment headers for the other functions listed.
Turn a matrix into a vector using a single colon.
x = rand(4,4);
x(:)
Vectorizing loops. There are lots of ways to do this, and it is entertaining to look for loops in your code and see how they can be vectorized. The performance is astonishingly faster with vector operations!
Anonymous functions, for a few reasons:
to make a quick function for one-off uses, like 3x^2+2x+7. (see listing below) This is useful for functions like quad and fminbnd that take functions as arguments. It's also convenient in scripts (.m files that don't start with a function header) since unlike true functions you can't include subfunctions.
for closures -- although anonymous functions are a little limiting as there doesn't seem to be a way to have assignment within them to mutate state.
.
% quick functions
f = #(x) 3*x.^2 + 2*x + 7;
t = (0:0.001:1);
plot(t,f(t),t,f(2*t),t,f(3*t));
% closures (linfunc below is a function that returns a function,
% and the outer functions arguments are held for the lifetime
% of the returned function.
linfunc = #(m,b) #(x) m*x+b;
C2F = linfunc(9/5, 32);
F2C = linfunc(5/9, -32*5/9);
Matlab's bsxfun, arrayfun, cellfun, and structfun are quite interesting and often save a loop.
M = rand(1000, 1000);
v = rand(1000, 1);
c = bsxfun(#plus, M, v);
This code, for instance, adds column-vector v to each column of matrix M.
Though, in performance critical parts of your application you should benchmark these functions versus the trivial for-loop because often loops are still faster.
LaTeX mode for formulas in graphs: In one of the recent releases (R2006?) you add the additional arguments ,'Interpreter','latex' at the end of a function call and it will use LaTeX rendering. Here's an example:
t=(0:0.001:1);
plot(t,sin(2*pi*[t ; t+0.25]));
xlabel('t');
ylabel('$\hat{y}_k=sin 2\pi (t+{k \over 4})$','Interpreter','latex');
legend({'$\hat{y}_0$','$\hat{y}_1$'},'Interpreter','latex');
Not sure when they added it, but it works with R2006b in the text(), title(), xlabel(), ylabel(), zlabel(), and even legend() functions. Just make sure the syntax you are using is not ambiguous (so with legend() you need to specify the strings as a cell array).
Using xlim and ylim to draw vertical and horizontal lines. Examples:
Draw a horizontal line at y=10:
line(xlim, [10 10])
Draw vertical line at x=5:
line([5 5], ylim)
Here's a quick example:
I find the comma separated list syntax quite useful for building function calls:
% Build a list of args, like so:
args = {'a', 1, 'b', 2};
% Then expand this into arguments:
output = func(args{:})
Here's a bunch of nonobvious functions that are useful from time to time:
mfilename (returns the name of the currently running MATLAB script)
dbstack (gives you access to the names & line numbers of the matlab function stack)
keyboard (stops execution and yields control to the debugging prompt; this is why there's a K in the debug prompt K>>
dbstop error (automatically puts you in debug mode stopped at the line that triggers an error)
I like using function handles for lots of reasons. For one, they are the closest thing I've found in MATLAB to pointers, so you can create reference-like behavior for objects. There are a few neat (and simpler) things you can do with them, too. For example, replacing a switch statement:
switch number,
case 1,
outargs = fcn1(inargs);
case 2,
outargs = fcn2(inargs);
...
end
%
%can be turned into
%
fcnArray = {#fcn1, #fcn2, ...};
outargs = fcnArray{number}(inargs);
I just think little things like that are cool.
Using nargin to set default values for optional arguments and using nargout to set optional output arguments. Quick example
function hLine=myplot(x,y,plotColor,markerType)
% set defaults for optional paramters
if nargin<4, markerType='none'; end
if nargin<3, plotColor='k'; end
hL = plot(x,y,'linetype','-', ...
'color',plotColor, ...
'marker',markerType, ...
'markerFaceColor',plotColor,'markerEdgeColor',plotColor);
% return handle of plot object if required
if nargout>0, hLine = hL; end
Invoking Java code from Matlab
cellfun and arrayfun for automated for loops.
Oh, and reverse an array
v = 1:10;
v_reverse = v(length(v):-1:1);
conditional arguments in the left-hand side of an assignment:
t = (0:0.005:10)';
x = sin(2*pi*t);
x(x>0.5 & t<5) = 0.5;
% This limits all values of x to a maximum of 0.5, where t<5
plot(t,x);
Know your axis properties! There are all sorts of things you can set to tweak the default plotting properties to do what you want:
set(gca,'fontsize',8,'linestyleorder','-','linewidth',0.3,'xtick',1:2:9);
(as an example, sets the fontsize to 8pt, linestyles of all new lines to all be solid and their width 0.3pt, and the xtick points to be [1 3 5 7 9])
Line and figure properties are also useful, but I find myself using axis properties the most.
Be strict with specifying dimensions when using aggregation functions like min, max, mean, diff, sum, any, all,...
For instance the line:
reldiff = diff(a) ./ a(1:end-1)
might work well to compute relative differences of elements in a vector, however in case the vector degenerates to just one element the computation fails:
>> a=rand(1,7);
>> diff(a) ./ a(1:end-1)
ans =
-0.5822 -0.9935 224.2015 0.2708 -0.3328 0.0458
>> a=1;
>> diff(a) ./ a(1:end-1)
??? Error using ==> rdivide
Matrix dimensions must agree.
If you specify the correct dimensions to your functions, this line returns an empty 1-by-0 matrix, which is correct:
>> diff(a, [], 2) ./ a(1, 1:end-1)
ans =
Empty matrix: 1-by-0
>>
The same goes for a min-function which usually computes minimums over columns on a matrix, until the matrix only consists of one row. - Then it will return the minimum over the row unless the dimension parameter states otherwise, and probably break your application.
I can almost guarantee you that consequently setting the dimensions of these aggregation functions will save you quite some debugging work later on.
At least that would have been the case for me. :)
The colon operator for the manipulation of arrays.
#ScottieT812, mentions one: flattening an array, but there's all the other variants of selecting bits of an array:
x=rand(10,10);
flattened=x(:);
Acolumn=x(:,10);
Arow=x(10,:);
y=rand(100);
firstSix=y(1:6);
lastSix=y(end-5:end);
alternate=y(1:2:end);
In order to be able to quickly test a function, I use nargin like so:
function result = multiply(a, b)
if nargin == 0 %no inputs provided, run using defaults for a and b
clc;
disp('RUNNING IN TEST MODE')
a = 1;
b = 2;
end
result = a*b;
Later on, I add a unit test script to test the function for different input conditions.
Using ismember() to merge data organized by text identfiers. Useful when you are analyzing differing periods when entries, in my case company symbols, come and go.
%Merge B into A based on Text identifiers
UniverseA = {'A','B','C','D'};
UniverseB = {'A','C','D'};
DataA = [20 40 60 80];
DataB = [30 50 70];
MergeData = NaN(length(UniverseA),2);
MergeData(:,1) = DataA;
[tf, loc] = ismember(UniverseA, UniverseB);
MergeData(tf,2) = DataB(loc(tf));
MergeData =
20 30
40 NaN
60 50
80 70
Asking 'why' (useful for jarring me out of a Matlab runtime-fail debugging trance at 3am...)
Executing a Simulink model directly from a script (rather than interactively) using the sim command. You can do things like take parameters from a workspace variable, and repeatedly run sim in a loop to simulate something while varying the parameter to see how the behavior changes, and graph the results with whatever graphical commands you like. Much easier than trying to do this interactively, and it gives you much more flexibility than the Simulink "oscilloscope" blocks when visualizing the results. (although you can't use it to see what's going on in realtime while the simulation is running)
A really important thing to know is the DstWorkspace and SrcWorkspace options of the simset command. These control where the "To Workspace" and "From Workspace" blocks get and put their results. Dstworkspace defaults to the current workspace (e.g. if you call sim from inside a function the "To Workspace" blocks will show up as variables accessible from within that same function) but SrcWorkspace defaults to the base workspace and if you want to encapsulate your call to sim you'll want to set SrcWorkspace to current so there is a clean interface to providing/retrieving simulation input parameters and outputs. For example:
function Y=run_my_sim(t,input1,params)
% runs "my_sim.mdl"
% with a From Workspace block referencing I1 as an input signal
% and parameters referenced as fields of the "params" structure
% and output retrieved from a To Workspace block with name O1.
opt = simset('SrcWorkspace','current','DstWorkspace','current');
I1 = struct('time',t,'signals',struct('values',input1,'dimensions',1));
Y = struct;
Y.t = sim('my_sim',t,opt);
Y.output1 = O1.signals.values;
Contour plots with [c,h]=contour and clabel(c,h,'fontsize',fontsize). I usually use the fontsize parameter to reduce the font size so the numbers don't run into each other. This is great for viewing the value of 2-D functions without having to muck around with 3D graphs.
Vectorization:
function iNeedle = findClosest(hay,needle)
%FINDCLOSEST find the indicies of the closest elements in an array.
% Given two vectors [A,B], findClosest will find the indicies of the values
% in vector A closest to the values in vector B.
[hay iOrgHay] = sort(hay(:)'); %#ok must have row vector
% Use histogram to find indices of elements in hay closest to elements in
% needle. The bins are centered on values in hay, with the edges on the
% midpoint between elements.
[iNeedle iNeedle] = histc(needle,[-inf hay+[diff(hay)/2 inf]]); %#ok
% Reversing the sorting.
iNeedle = iOrgHay(iNeedle);
Using persistent (static) variables when running an online algorithm. It may speed up the code in areas like Bayesian machine learning where the model is trained iteratively for the new samples. For example, for computing the independent loglikelihoods, I compute the loglikelihood initially from scratch and update it by summing this previously computed loglikelihood and the additional loglikelihood.
Instead of giving a more specialized machine learning problem, let me give a general online averaging code which I took from here:
function av = runningAverage(x)
% The number of values entered so far - declared persistent.
persistent n;
% The sum of values entered so far - declared persistent.
persistent sumOfX;
if x == 'reset' % Initialise the persistent variables.
n = 0;
sumOfX = 0;
av = 0;
else % A data value has been added.
n = n + 1;
sumOfX = sumOfX + x;
av = sumOfX / n; % Update the running average.
end
Then, the calls will give the following results
runningAverage('reset')
ans = 0
>> runningAverage(5)
ans = 5
>> runningAverage(10)
ans = 7.5000
>> runningAverage(3)
ans = 6
>> runningAverage('reset')
ans = 0
>> runningAverage(8)
ans = 8
I'm surprised that while people mentioned the logical array approach of indexing an array, nobody mentioned the find command.
e.g. if x is an NxMxO array
x(x>20) works by generating an NxMxO logical array and using it to index x (which can be bad if you have large arrays and are looking for a small subset
x(find(x>20)) works by generating list (i.e. 1xwhatever) of indices of x that satisfy x>20, and indexing x by it. "find" should be used more than it is, in my experience.
More what I would call 'tricks'
you can grow/append to arrays and cell arrays if you don't know the size you'll need, by using end + 1 (works with higher dimensions too, so long as the dimensions of the slice match -- so you'll have to initialize x to something other than [] in that case). Not good for numerics but for small dynamic lists of things (or cell arrays), e.g. parsing files.
e.g.
>> x=[1,2,3]
x = 1 2 3
>> x(end+1)=4
x = 1 2 3 4
Another think many people don't know is that for works on any dim 1 array, so to continue the example
>> for n = x;disp(n);end
1
2
3
4
Which means if all you need is the members of x you don't need to index them.
This also works with cell arrays but it's a bit annoying because as it walks them the element is still wrapped in a cell:
>> for el = {1,2,3,4};disp(el);end
[1]
[2]
[3]
[4]
So to get at the elements you have to subscript them
>> for el = {1,2,3,4};disp(el{1});end
1
2
3
4
I can't remember if there is a nicer way around that.
-You can make a Matlab shortcut to an initialization file called startup.m. Here, I define formatting, precision of the output, and plot parameters for my Matlab session (for example, I use a larger plot axis/font size so that .fig's can be seen plainly when I put them in presentations.) See a good blog post from one of the developers about it http://blogs.mathworks.com/loren/2009/03/03/whats-in-your-startupm/ .
-You can load an entire numerical ascii file using the "load" function. This isn't particularly fast, but gets the job done quickly for prototyping (shouldn't that be the Matlab motto?)
-As mentioned, the colon operator and vectorization are lifesavers. Screw loops.
x=repmat([1:10],3,1); % say, x is an example array of data
l=x>=3; % l is a logical vector (1s/0s) to highlight those elements in the array that would meet a certain condition.
N=sum(sum(l));% N is the number of elements that meet that given condition.
cheers -- happy scripting!