I am trying to build a storage manager where users can store their lab samples/data. Unfortunately, this means that the tables will end up being quite dynamic, as each sample might have different data associated with it. I will still require users to define a schema, so I can display the data properly, however, I think this schema will have to be represented as a JSON field in the underlying database.
I was wondering, in Prisma, is there a way to fuzzy search through collections. Could I type something like help and then return all rows that match this expression ANYWHERE in their columns? (including the JSON fields). Could i do something like this at all with posgresql? Or with MongoDB?
thank you
You can easily do that with jsonb in PostgreSQL.
If you have a table defined like
CREATE TABLE userdata (
id bigint PRIMARY KEY,
important_col1 text,
important_col2 integer,
other_cols jsonb
);
You can create an index like this
CREATE INDEX ON userdata USING gin (other_cols);
and search efficiently with
SELECT id FROM userdata WHERE other_cols #> '{"attribute": "value"}';
Here, #> is the JSON containment operator in PostgreSQL.
Yes, in PostgreSQL you surely can do this. It's quite straightforward. Here is an example.
Let your table be called the_table aliased as tht. Cast an entire table row as text tht::text and use case insensitive regular expression match operator ~* to find rows that contain help in this text. You can use more elaborate and powerful regular expression for searching too.
Please note that since the ~* operator will defeat any index, this query will result in a sequential scan.
select * -- or whatever list of expressions you need
from the_table as tht
where tht::text ~* 'help';
Related
My table (table) has a JSONB field (data) that contains a field with an array where I store tags (tags).
I query that table with an expression like:
SELECT * FROM table WHERE data->'tags' #? '$[*] ? (# like_regex ".*(foo|bar).*" flag "i");
With such use-case is there a way for me to index the data->'tags' array to speed up the query? Or should I rather work on moving the tags array out of the JSONB field and into a TEXT[] field and index that?
I've already tried:
CREATE INDEX foo ON tbl USING GIN ((data->'tags') jsonb_path_ops);
but it doesn't work: https://gist.github.com/vkaracic/a62ac917d34eb6e975c4daeefbd316e8
The index you built can be used (if you set enable_seqscan=off, you will see that it does get used), but it is generally not chosen as it is pretty useless for this query. The only rows it would rule out through the index are the ones that don't have the 'tags' key at all, and even at that is poorly estimated so probably won't be used without drastic measures.
You could try to convert to text[] and the use parray_gin, but probably better would be to convert to a child table with text and then use pg_trgm.
The past two days I've been reading a lot about jsonb, full text search, gin index, trigram index and what not but I still can not find a definitive or at least a good enough answer on how to fastly search if a row of type JSONB contains certain string as a value. Since it's a search functionality the behavior should be like that of ILIKE
What I have is:
Table, lets call it app.table_1 which contains a lot of columns one of which is of type JSONB, so lets call it column_jsonb
The data inside column_jsonb will always be flatten (no nested objects, etc) but the keys can vary. An example of the data in the column with obfuscated values looks like this:
"{""Key1"": ""Value1"", ""Key2"": ""Value2"", ""Key3"": null, ""Key4"": ""Value4"", ""Key5"": ""Value5""}"
I have a GIN index for this column which doesn't seems to affect the search time significantly (I am testing with 20k records now which takes about 550ms). The indes looks like this:
CREATE INDEX ix_table_1_column_jsonb_gin
ON app.table_1 USING gin
(column_jsonb jsonb_path_ops)
TABLESPACE pg_default;
I am interested only in the VALUES and the way I am searching them now is this:
EXISTS(SELECT value FROM jsonb_each(column_jsonb) WHERE value::text ILIKE search_term)
Here search_term is variable coming from the front end with the string that the user is searching for
I have the following questions:
Is it possible to make the check faster without modifying the data model? I've read that trigram index might be usfeul for similar cases but at least for me it seems that converting jsonb to text and then checking will be slower and actually I am not sure if the trigram index will actually work if the column original type is JSONB and I explicitly cast each row to text? If I'm wroing I would really appreciate some explanation with example if possible.
Is there some JSONB function that I am not aware of which offers what I am searching for out of the box, I'm constrained to PostgreSQL v 11.9 so some new things coming with version 12 are not available for me.
If it's not possible to achieve significant improvement with the current data structure can you propose a way to restructure the data in column_jsonb maybe another column of some other type with data persisted in some other way, I don't know...
Thank you very much in advance!
If the data structure is flat, and you regularly need to search the values, and the values are all the same type, a traditional key/value table would seem more appropriate.
create table table1_options (
table1_id bigint not null references table1(id),
key text not null,
value text not null
);
create index table1_options_key on table1_options(key);
create index table1_options_value on table1_options(value);
select *
from table1_options
where value ilike 'some search%';
I've used simple B-Tree indexes, but you can use whatever you need to speed up your particular searches.
The downsides are that all values must have the same type (doesn't seem to be a problem here) and you need an extra table for each table. That last one can be mitigated somewhat with table inheritance.
This might be an obvious and simple question.
But I read through the jsonb data type documentation, but nowhere it mentions the lookup cost of a key in jsonb data.
For example, let's say I have a table with following schema:
CREATE TABLE A (id character varying (20),
info jsonb);
I want to know how postgres would parse a where query as below:
SELECT * FROM A WHERE info->>'city' = 'portland';
While going through the jsonb field of a row, is the lookup constant time (O(1)) or linear time (checking each key one by one in the row's jsonb dictionary) within that jsonb data dictionary?
My intuition is that it must be constant time (else what's the point of a dictionary style data?) but I can't see it in the official documentation to convince my team.
Any help would be great!
Thanks!
As with any WHERE condition in SQL: if there is no index, the database has to go through all rows of the table to find those that satisfy your condition.
You can either index a specific expression, or you can index the whole json value using a GIN index which then enables Postgres to use the index if any of the supported operators are used.
If you always check for the city, you can create a regular B-Tree index:
create index on a ( (info->>'city') );
If you don't know what you will be looking for, a GIN index might be a better choice:
create index on a using gin (info);
But you will need to change your query to use one of the operators that are supported by a GIN index, e.g. using the contains operator #>
select *
from a
where info #> '{"city": "portland"}::jsonb;
Note that an index lookup is not always the most efficient solution. Sometimes it's faster to simply go through all rows, sometimes the index lookup is faster.
If you want to learn more about indexes in relational database, go through the material here: http://use-the-index-luke.com/
Let's say I have a table called tag:
CREATE TABLE tag (
id SERIAL PRIMARY KEY,
text TEXT NOT NULL UNIQUE
);
And I use integer arrays on other tables to reference those tags:
CREATE TABLE device (
id SERIAL PRIMARY KEY,
tag_ids INTEGER[] NOT NULL DEFAULT '{}',
);
What is the simplest and most efficient way that I can map the tag_ids to the appropriate rows in tag such that I can query the device table and the results will include a tags column with the text of each tag in a text array?
I understand that this is not the preferred technique and has a number of significant disadvantages. I understand that there is no way to enforce referential integrity in arrays. I understand that a many-to-many join would be much simpler and probably better way to implement tagging.
The database normalization lectures aside, is there a graceful way to do this in postgres? Would it make sense to write a function to accomplish this?
Untested, but IIRC:
SELECT
device.*, t."text"
FROM
device d
left outer join tag t on ( ARRAY[t.id] #> d.tag_ids)
should be able to use a GiST or GIN index on d.tag_ids. That's also useful for queries where you want to say "find rows containing tag [x]".
I might've got the direction of the #> operator wrong, I always get it muddled. See the array operators docs for details.
The intarray module provides a gist opclass for arrays of integer which I'd recommend using; it's more compact and faster to update.
I would recommend a combination of unnest and join for this.
i.e. something of the form:
select unnest(t.tag_ids) as tag_id, d.*
from device as d
join tag as t ON (d.tag_id = d.id)
order by d.tag_id;
I was wondering I'm not really sure how multiple indexes would work on the same column.
So lets say I have an id column and a country column. And on those I have an index on id and another index on id and country. When I do my query plan it looks like its using both those indexes. I was just wondering how that works? Can I force it to use just the id and country index.
Also is it bad practice to do that? When is it a good idea to index the same column multiple times?
It is common to have indexes on both (id) and (country,id), or alternatively (country) and (country,id) if you have queries that benefit from each of them. You might also have (id) and (id, country) if you want the "covering" index on (id,country) to support index only scans, but still need the stand along to enforce a unique constraint.
In theory you could just have (id,country) and still use it to enforce uniqueness of id, but PostgreSQL does not support that at this time.
You could also sensibly have different indexes on the same column if you need to support different collations or operator classes.
If you want to force PostgreSQL to not use a particular index to see what happens with it gone, you can drop it in a transactions then roll it back when done:
BEGIN; drop index table_id_country_idx; explain analyze select * from ....; ROLLBACK;