Error Installing AGE from Source Code on Mac - postgresql

I am trying to install AGE on my system running macOS 12.6.3 using this guide. I am getting an error on the step I try to make PG_CONFIG=/path/to/postgres/bin/pg_config install and am unsure how to get it fixed.
Here are the series of Terminal lines:
kenwoon#Kens-MacBook-Pro age-1.1.0-rc0 % make PG_CONFIG=/Users/kenwoon/Downloads/postgresql-12.14/src/bin/pg_config/pg_config install
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -Wno-compound-token-split-by-macro -O2 -I.//src/include -I.//src/include/parser -I. -I./ -I/usr/local/pgsql/include/server -I/usr/local/pgsql/include/internal -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.1.sdk -c -o src/backend/age.o src/backend/age.c
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -Wno-compound-token-split-by-macro -O2 -I.//src/include -I.//src/include/parser -I. -I./ -I/usr/local/pgsql/include/server -I/usr/local/pgsql/include/internal -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.1.sdk -c -o src/backend/catalog/ag_catalog.o src/backend/catalog/ag_catalog.c
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -Wno-compound-token-split-by-macro -O2 -I.//src/include -I.//src/include/parser -I. -I./ -I/usr/local/pgsql/include/server -I/usr/local/pgsql/include/internal -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.1.sdk -c -o src/backend/catalog/ag_graph.o src/backend/catalog/ag_graph.c
src/backend/catalog/ag_graph.c:67:15: error: assigning to 'Oid' (aka 'unsigned int') from incompatible type 'void'
graph_oid = CatalogTupleInsert(ag_graph, tuple);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [src/backend/catalog/ag_graph.o] Error 1

In order to install the extension for PostgreSQL 12 you will need to checkout branch AGE_PG12.1.0_ALPHA and then run the installer

First of all Apache Age works fine with PostgreSQL 11. If you can I would recommend using PostgreSQL 11. Moreover follow the tutorial from Apache Age official site
Steps to install Apache Age on MacOs.
First install postgresql
Download the bz2 file. Postgresql 11.17 works well with apache age.
Unzip the file using tar
Run the command "./configure" with optional parameters as mentioned in the video.
run sudo make install
Then you need to install apache age. The link is given below
https://youtu.be/0-qMwpDh0CA

Try to install apache age with postgresql 11
and use these flags for configuration:
./configure --enable-debug --enable-cassert --prefix=$(pwd) CFLAGS="-glldb -ggdb -Og -g3 -fno-omit-frame-pointer"
This video is the good source to install apache age on macOS.

The issue is with the master branch of age, I think some development code was merged by mistake. To be absolutely sure that you are trying to install working age extension, use the release source code.

I had already faced this issue on my macbook pro m1. But after checking all that tutorials, that problem isn't solved because of it needs step by step compilation. If you broke or miss any steps, then the projects failed to be opened.
I am implemented terminal and AGE-Viewer both way. I will give you proper direction how to avoid this error. Thanks
#apacheage #postgresql
https://age.apache.org/ https://github.com/apache/age
Successfully connected on macbook pro m1

I faced the exact same situation while being on Linux where the 'pg_config' file was in subdirectory 'pg_config' of directory 'src/bin'. This issue will be resolved if you install the postgresql server-side development files using the command :
sudo apt install postgresql-server-dev-all
Then download the tar file to install postgres which will be extracted to your current directory. (Note install postgres 11 instead of 12)
wget https://ftp.postgresql.org/pub/source/v11.18/postgresql-11.18.tar.gz && tar -xvf postgresql-11.18.tar.gz && rm -f postgresql-11.18.tar.gz
After this, install psql using the ./configure command, I would recommend enabling the debugging flag. To read more on the flags, read the Doc. pwd will install postgres in the current directory. You might need to look for the exact ./configure command for macOS.
cd postgresql-11.18
./configure --enable-debug --enable-cassert --prefix=$(pwd) CFLAGS="-ggdb -Og -fno-omit-frame-pointer"
make install
cd ../../
This should install postgreSQL to your system.
I hope it helps.
References
Blog

Related

Failed to compile and install postgreSQL V11 on macOS

I downloaded postgreSQL V11 source code through github, but failed to compile and install it on macOS. This worked one month ago.
Here are the error messages:
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -O2 zic.o -L../../src/port -L../../src/common -Wl,-dead_strip_dylibs -lpgcommon -lpgport -lz -lreadline -lm -o zic
ld: warning: ld: warning: ignoring file ../../src/common/libpgcommon.a, file was built for archive which is not the architecture being linked (x86_64): ../../src/common/libpgcommon.aignoring file ../../src/port/libpgport.a, file was built for archive which is not the architecture being linked (x86_64): ../../src/port/libpgport.a**
I searched on line but failed to find any useful information. Any idea for this? Thanks.
Finally I found the reason why postgreSQL v11 cannot be installed through source package on Mac.
I thought this issue should be simple, however, it is not.
It seems like the compiler is using the GNU ar(1)/ranlib(1) instead of the ones supplied by the Xcode toolchain.
So you need to run which -a ar and which -a ranlib to see the what you have in $PATH.
Then you can solve the problem based on the detailed answer in Static library built for archive which is not the architecture being linked (x86_64)

Error When Installing DBI Perl Module

Here is my output, any suggestions? I've tried installing by perl -MCPAN -e shell and then force install DBI.
cpan[10]> force install DBI
Running install for module 'DBI'
Running make for T/TI/TIMB/DBI-1.636.tar.gz
Has already been unwrapped into directory /root/.cpan/build/DBI-1.636-sGWX9V
CPAN.pm: Building T/TI/TIMB/DBI-1.636.tar.gz
gcc -c -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DVERSION=\"1.636\" -DXS_VERSION=\"1.636\" -fPIC "-I/usr/lib64/perl5/CORE" -W -Wall -Wpointer-arith -Wbad-function-cast -Wno-comment -Wno-sign-compare -Wno-cast-qual -Wmissing-noreturn -Wno-unused-parameter Perl.c
/bin/sh: gcc: command not found
make: *** [Perl.o] Error 127
TIMB/DBI-1.636.tar.gz
/bin/make -- NOT OK
Running make test
Can't test without successful make
Running make install
Make had returned bad status, install seems impossible
Failed during this command:
TIMB/DBI-1.636.tar.gz : make NO
The error message:
/bin/sh: gcc: command not found
so you need to install gcc
As you have already seen, installing gcc will fix the problem.
But I wonder why you don't use the pre-packaged version.
$ sudo yum install perl-DBI
Also, do you realise that Fedora 20 is now unsupported? I strongly suggest that you upgrade to a supported version (Fedora 24 or 25).

Trying to install pymongo on ubuntu 12.04

Background Information:
Hi there. I'm trying to get mongodb and python (2.7.8) working on my ubuntu 12.04 box.
I've got mongodb installed and running...
I *think I have python set up too. Now I'm trying to install pymongo.
Problem
When I try to install pymongo, this is what i get:
me#mydev:~/Documents/Python-2.7.8$ pip install pymongo
Downloading/unpacking pymongo
Cannot fetch index base URL http://pypi.python.org/simple/
Could not find any downloads that satisfy the requirement pymongo
No distributions at all found for pymongo
Storing complete log in /home/me/.pip/pip.log
me#mydev:~/Documents/Python-2.7.8$
The log file pip.log looks like this: http://pastebin.com/15wv38kf
Based on the logs, tt *seems like I need to update the repositories to look for the package in a different URL... but I'm not sure what library / url to add.
Other things I've tested / checked:
Retrieved updated package list:
sudo apt-get update
Proved that python 2.7.8 is installed:
me#medev:~/Documents/Python-2.7.8$ python
Python 2.7.8 (default, Nov 5 2014, 15:18:10)
[GCC 4.6.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>>
Proved that PIP is installed:
me#medev:~/Documents/Python-2.7.8$ pip
Usage: pip COMMAND [OPTIONS]
pip: error: You must give a command (use "pip help" to see a list of commands)
me#medev:~/Documents/Python-2.7.8$
Proved that mongodb is installed (but apparently not setup properly!):
me#medev:~/Documents/Python-2.7.8$ mongo
MongoDB shell version: 2.6.5
connecting to: test
2014-11-06T08:23:47.444-0500 warning: Failed to connect to 127.0.0.1:27017, reason: errno:111 Connection refused
2014-11-06T08:23:47.444-0500 Error: couldn't connect to server 127.0.0.1:27017 (127.0.0.1), connection attempt failed at src/mongo/shell/mongo.js:146
exception: connect failed
me#medev:~/Documents/Python-2.7.8$
Any suggestions would be appreciated.
EDIT 1
I tried to just install using the package manager as suggested, but that doesn't seem to work. Please see the results at: http://pastebin.com/V56KXzFT
Perhaps my test to prove pymongo is installed is faulty?
EDIT 2
I can't remember now but I think by default Ubuntu 12.0.4 comes with python 2.7.3 or something like that. But I'm doing a course, and it requires 2.7.8.
Initially, I downloaded a zip file for python 2.7.6 and saved it in my Documents folder...
I extracted it and ran
./compile
make
make install
then I realized that I needed 2.7.8 and so I did the same thing. Downloaded the zip ... and
compiled.
This is the link that I used as a reference to install 2.7.8:
https://askubuntu.com/questions/101591/how-do-i-install-python-2-7-2-on-ubuntu
Could this be related to the issue?
"pip install pymongo" works fine on my Linux box:
$ sudo pip install pymongo
Downloading/unpacking pymongo
Downloading pymongo-2.7.2.tar.gz (381kB): 381kB downloaded
Running setup.py (path:/tmp/pip_build_root/pymongo/setup.py) egg_info for package pymongo
Installing collected packages: pymongo
Running setup.py install for pymongo
building 'bson._cbson' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ibson -I/usr/local/include/python2.7 -c bson/_cbsonmodule.c -o build/temp.linux-x86_64-2.7/bson/_cbsonmodule.o
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ibson -I/usr/local/include/python2.7 -c bson/time64.c -o build/temp.linux-x86_64-2.7/bson/time64.o
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ibson -I/usr/local/include/python2.7 -c bson/buffer.c -o build/temp.linux-x86_64-2.7/bson/buffer.o
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ibson -I/usr/local/include/python2.7 -c bson/encoding_helpers.c -o build/temp.linux-x86_64-2.7/bson/encoding_helpers.o
gcc -pthread -shared -Wl,-rpath /usr/local/lib build/temp.linux-x86_64-2.7/bson/_cbsonmodule.o build/temp.linux-x86_64-2.7/bson/time64.o build/temp.linux-x86_64-2.7/bson/buffer.o build/temp.linux-x86_64-2.7/bson/encoding_helpers.o -L/usr/local/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/bson/_cbson.so
building 'pymongo._cmessage' extension
< ... snip ... >
Successfully installed pymongo
Cleaning up...
I'd guess it failed for you because, perhaps, you first must upgrade "pip" itself.
I notice you've tried various methods of installing PyMongo, and some methods work but when you do "import pymongo" in Python it fails. Here, I guess that you have multiple version of Python installed, and that your default Python is different from the system Python for which PyMongo was installed.

Installing Term::TermKey returns error

I have a problem while installing Term::TermKey with CPAN and I can't find information about how to solve it. Here is an output:
cpan[9]> install Term::TermKey
Running install for module 'Term::TermKey'
Running Build for P/PE/PEVANS/Term-TermKey-0.10.tar.gz
Checksum was ok
'/usr/bin/perl Build.PL installdirs=site' returned status 256, won't make
Running Build test
Make had some problems, won't test
Running Build install
Make had some problems, won't install
May someone help me?
//edit
I installed libtermkey but I still have a problem:
Building Term-TermKey
cc -I/usr/lib/perl5/core_perl/CORE -DXS_VERSION="0.10" -DVERSION="0.10" -fPIC -I/usr/local/include -c -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -o lib/Term/TermKey.o lib/Term/TermKey.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Term/TermKey/TermKey.bs')
cc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,--hash-style=gnu -L/usr/local/lib -fstack-protector -o blib/arch/auto/Term/TermKey/TermKey.so lib/Term/TermKey.o -L/usr/local/lib -ltermkey
PEVANS/Term-TermKey-0.10.tar.gz
./Build -- OK
'YAML' not installed, will not store persistent state
Running Build test
t/00use.t ........... 1/1
# Failed test 'use Term::TermKey;'
# at t/00use.t line 8.
# Tried to use 'Term::TermKey'.
# Error: Can't load '/root/.cpan/build/Term-TermKey-0.10-Y5j3Oz/blib/arch/auto/Term/TermKey/TermKey.so' for module Term::TermKey: libtermkey.so.1: nie można otworzyć pliku obiektu dzielonego: Nie ma takiego pliku ani katalogu at /usr/lib/perl5/core_perl/DynaLoader.pm line 190.
It fails on every test. I don't know why. There is -L/usr/local/lib -ltermkey, so I've checked this directory:
ciembor#peace lib]$ ls | grep libtermkey
libtermkey.a
libtermkey.la
libtermkey.so
libtermkey.so.1
libtermkey.so.1.4.0
And all files are on their place...
Make sure that /usr/local/lib is also present in either $LD_LIBRARY_PATH or /etc/ld.so.conf. Without that, even if pkg-config can find the termkey.pc file which tells the compiler where the <termkey.h> files are, the (runtime) linker will not be able to link against the actual libtermkey.so file at runtime.
Alternatively, you could install libtermkey as a real package if your OS supports such - I keep a package on http://packages.leonerd.org.uk/ for Debian testing/unstable; it may also be suitable for other Debian-derived distributions such as Ubuntu.
When you install modules through CPAN, you don't see many of the error messages if the install fails. I would suggest to download Term-TermKey-0.10.tar.gz manually through http://search.cpan.org, extract it and then
perl Makefile.PL
make
make test
sudo make install
On my machine I'm told at the first step that I don't have libtermkey installed and it points me to a download.

Unable to install the Crypt-SSLeay module

I'm creating a web application that requires the use of the perl module Crypt-SSLeay. This module has a dependency of needing OpenSSL headers. Since my Linux server has neither I went through these steps to install, but I'm receiving an error that's hard to understand (see below) because of my limited experience.
Server Information:
Running Oracle Enterprise Linux
Linux version 2.6.18-194.11.4.0.1.el5 (mockbuild#ca-build9.us.oracle.com) (gcc version 4.1.2 20080704 (Red Hat 4.1.2-48))
Steps to replicate the issue:
Downloaded and extracted openssl 0.9.8r from here and ran the following commands (after going to the directory)
./config --openssldir=/usr/local/openssl
make
make test
sudo make install
Downloaded and extracted the Crypt-SSLeay module from here and then ran the following commands (after going to the directory)
perl Makefile.PL
make
I receive the following error after I run "make":
BUILD INFORMATION
================================================
ssl library: OpenSSL 0.9.8r in /usr/local/openssl
ssl header: openssl/ssl.h
libraries: -L/usr/local/openssl/lib -lssl -lcrypto -lgcc
include dir: -I/usr/local/openssl/include
================================================
Note (probably harmless): No library found for -lgcc
Writing Makefile for Crypt::SSLeay
The test suite can attempt to connect to public servers
to ensure that the code is working properly. If you are
behind a strict firewall or have no network connectivity,
these tests may fail (through no fault of the code).
Do you want to run the live tests (y/N)? [N]
-bash-3.2$ make
gcc -c -I/usr/local/openssl/include -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -DVERSION=\"0.58\" -DXS_VERSION=\"0.58\" -fPIC "-I/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE" SSLeay.c
SSLeay.c: In function ‘XS_Crypt__SSLeay__CTX_new’:
SSLeay.c:118: warning: unused variable ‘packname’
SSLeay.c: In function ‘XS_Crypt__SSLeay__Conn_new’:
SSLeay.c:395: warning: unused variable ‘packname’
SSLeay.c: In function ‘XS_Crypt__SSLeay__CTX_use_pkcs12_file’:
SSLeay.c:287: warning: ‘RETVAL’ may be used uninitialized in this function
Running Mkbootstrap for Crypt::SSLeay ()
chmod 644 SSLeay.bs
rm -f blib/arch/auto/Crypt/SSLeay/SSLeay.so
gcc -shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic SSLeay.o -o blib/arch/auto/Crypt/SSLeay/SSLeay.so \
-L/usr/local/openssl/lib -lssl -lcrypto \
/usr/bin/ld: /usr/local/openssl/lib/libssl.a(s2_clnt.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/usr/local/openssl/lib/libssl.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [blib/arch/auto/Crypt/SSLeay/SSLeay.so] Error 1
I'm not sure what I need to do when I recompile OpenSSL to get this module to work. Any help appreciated.
That looks like an error in the OpenSSL build itself. Are you sure your distribution doesn't provide the OpenSSL headers? (And i'm sure you already had the libraries, right?)
The headers are in a package called "openssl-devel" on RedHat IIRC, should be the same for Oracle Enterprise Linux (I guess, never used that).
If you do find the headers in your distro's packages, don't forget to un-install your custom build (remove the files manually if the OpenSSL Makefile doesn't have an uninstall target).