Doxygen 1.8 on Travis-ci - doxygen

I'm trying to generate doxygen docs on travis-ci, and got a .travis.yml file where i have before script like this:
before_install:
- sudo apt-get update
- sudo apt-get install doxygen
I would expect to have the latest doxygen installed after this (1.8.x), but when i look in the build log i can see the following under sudo apt-get install doxygen:
...
Get:7 http://us.archive.ubuntu.com/ubuntu/ precise/main doxygen amd64 1.7.6.1-2ubuntu1 [2,427 kB]
...
Selecting previously unselected package doxygen.
Unpacking doxygen (from .../doxygen_1.7.6.1-2ubuntu1_amd64.deb) ...
...
I'm not an ubuntu person myself, and don't know very much about apt-get, but when i look around it seems like the combination of apt-get updateand apt-get install` should install the latest version. What am I missing?

I found the solution
I had to add the libreoffice repository to apt-get. This is how the .travis.yml file looks like:
before_install:
- sudo apt-get install python-software-properties
- sudo apt-add-repository -y ppa:libreoffice/libreoffice-4-2
- sudo apt-get update
- sudo apt-get install doxygen

Related

Try to install snapd but giving `conflicting requests` error

I am trying to install snapd but giving this error.
Operating System - Red Hat Enterprise Linux release 8.6 (Ootpa)
Error:
Problem: package snapd-2.57.6-2.el8.x86_64 requires snapd-selinux = 2.57.6-2.el8, but none of the providers can be installed
- conflicting requests
- nothing provides selinux-policy >= 3.14.3-108.el8 needed by snapd-selinux-2.57.6-2.el8.noarch
- nothing provides selinux-policy-base >= 3.14.3-108.el8 needed by snapd-selinux-2.57.6-2.el8.noarch
(try to add '--skip-broken' to skip uninstallable packages or '--nobest' to use not only best candidate packages)
I have the same problem. There's a long discussion about this here: https://forum.snapcraft.io/t/trouble-installing-snapd-on-rhel-8/13140/2. It looks like the only way to do it, if you can install all the necessary build tools, is to build from sources, as one of the posts there suggests.(I couldn't do it on my system because it's having subscription management issues.)
I also tried using CR repository, as suggested in the instructions for CentOS here: https://snapcraft.io/docs/installing-snap-on-centos, but that didn't work for me, either (I guess it's really just for CentOS and not RHEL).
UPDATE:
I finally found a solution (where there's a will...)! I manually installed all the requirements, one by one, that weren't available in the epel-release repo. My process was the following:
wget https://rpmfind.net/linux/centos/8-stream/BaseOS/x86_64/os/Packages/rpm-4.14.3-19.el8.x86_64.rpm
wget https://rpmfind.net/linux/centos/8-stream/BaseOS/x86_64/os/Packages/rpm-libs-4.14.3-19.el8.x86_64.rpm
wget https://dl.rockylinux.org/pub/rocky/8/BaseOS/aarch64/os/Packages/s/selinux-policy-3.14.3-108.el8.noarch.rpm
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/libsemanage-2.9-9.el8.x86_64.rpm --allowerasing -y
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/policycoreutils-2.9-19.el8.x86_64.rpm -y
sudo rpm -i --force rpm-4.14.3-19.el8.x86_64.rpm
sudo rpm -i --force rpm-libs-4.14.3-19.el8.x86_64.rpm
sudo rpm -i --force selinux-policy-3.14.3-108.el8.noarch.rpm
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/python3-libsemanage-2.9-9.el8.x86_64.rpm -y
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/python3-policycoreutils-2.9-19.el8.noarch.rpm -y
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/policycoreutils-python-utils-2.9-19.el8.noarch.rpm -y
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/selinux-policy-minimum-3.14.3-108.el8.noarch.rpm -y
sudo yum install http://mirror.centos.org/centos/8-stream/BaseOS/x86_64/os/Packages/libseccomp-2.5.2-1.el8.x86_64.rpm -y
sudo yum install https://download-ib01.fedoraproject.org/pub/epel/8/Everything/x86_64/Packages/s/snapd-selinux-2.57.6-2.el8.noarch.rpm -y
sudo yum install snapd -y
sudo yum update snapd -y
It's conceivable that on your system something else will be missing. If you run into an error telling you that nothing provides package XYZ, you can find it here: https://centos.pkgs.org/8-stream/centos-baseos-x86_64/ and simply sudo yum install directly from the binary package URL; e.g.:
That's exactly what my process was, and here's what I have now:
$ cat /etc/redhat-release (base)
Red Hat Enterprise Linux release 8.2 (Ootpa)
$ snap --version (base)
snap 2.57.6-2.el8
snapd 2.52.1
series 16
rhel 8.2
kernel 4.18.0-193.6.3.el8_2.x86_64

postgresql-client-13 : Depends: libpq5 (>= 13~beta2) but 12.3-1.pgdg18.04+1 is to be installed

I want to try new PostgreSQL and follow this instruction. But installation fails:
$ sudo apt install postgresql-client-13
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:
The following packages have unmet dependencies:
postgresql-client-13 : Depends: libpq5 (>= 13~beta2) but 12.3-1.pgdg18.04+1 is to be installed
E: Unable to correct problems, you have held broken packages.
I also tried this instruction to resolve unmet dependencies
What did I wrong and how to install psql 13?
UPD
Content of my sources.list.d:
kes#kes-X751SA /etc/apt/sources.list.d $ cat pgdg.list
deb http://apt.postgresql.org/pub/repos/apt/ bionic-pgdg main
kes#kes-X751SA /etc/apt/sources.list.d $ cat pgdg-testing.list
deb http://apt.postgresql.org/pub/repos/apt/ bionic-pgdg-testing main 13
Also:
$ sudo apt-cache policy postgresql-13
postgresql-13:
Installed: (none)
Candidate: 13~beta2-1.pgdg18.04+1
Version table:
13~beta2-1.pgdg18.04+1 100
100 http://apt.postgresql.org/pub/repos/apt bionic-pgdg-testing/13 amd64 Packages
Had the same problem.
in /etc/apt/sources.list.d/pgdg.list where you have
deb http://apt.postgresql.org/pub/repos/apt/ focal-pgdg main
change it to
deb http://apt.postgresql.org/pub/repos/apt/ focal-pgdg main 13
then run
sudo apt update
and then you can do
sudo apt install postgresql-13 postgresql-client-13
that worked on my machine.
Just FYI:
WARNING: The data format may change between beta releases. Be prepared
to pg_dump the database contents before you upgrade the package to a
newer beta or to a final release. Check the release notes before
upgrading.
try aptitude instead of apt-get
sudo apt-get install aptitude
sudo aptitude install <package-name>
https://askubuntu.com/a/1056378/1087086
Finally at my docker container I do next commands:
RUN yum -y install https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
RUN yum -y install llvm5.0-devel
RUN yum -y install centos-release-scl-rh
RUN yum -y install llvm-toolset-7-clang
#RUN rpm -Uvh https://yum.postgresql.org/11/redhat/rhel-7-x86_64/pgdg-redhat-repo-latest.noarch.rpm --replacepkgs
#RUN yum-config-manager --enable pgdg13-updates-testing
RUN yum -y install https://download.postgresql.org/pub/repos/yum/reporpms/EL-7-x86_64/pgdg-redhat-repo-latest.noarch.rpm
RUN yum -y install postgresql13 postgresql13-devel
Commented out lines were for case before 13.1 was released

Problem Installing mysql-workbench on ubuntu 19.04

It says it is not available in any source. Tried using the debian provided by oracle. It says libssl versions are incompatible. Any help in this regard.
Now, mysql workbench is available for ubuntu 19.04.
You can manually install after downloading the file.
Step 1:
Direct download link-
https://dev.mysql.com/downloads/file/?id=488567
OR
Visit here select your OS then download as per OS version
https://dev.mysql.com/downloads/workbench/
Step 2:
sudo apt install file_path_of_downloaded_workbench
Finish!!
I solved this problem by installing the libzip package, directly from the deb package. I found at https://ubuntu.pkgs.org/18.10/ubuntu-universe-amd64/libzip4_1.1.2-1.1_amd64.deb.html. Download and install libzip4, then install mysql-workbench from the apt or deb package, whichever you prefer.
on Ubuntu 19
1)I had to, preceding it on Ubuntu 19, also install manually a library libzip https://ubuntu.pkgs.org/18.10/ubuntu-universe-amd64/libzip4_1.1.2-1.1_amd64.deb.html
2) then manually selecting on a download page deb package for mysql workbench https://dev.mysql.com/downloads/workbench/
then install deb packages via a standard apt installer in a Downloads dir
sudo apt install ./libzip4_1.1.2-1.1_amd64.deb
and downloaded workbench deb package
sudo apt install ./mysql-workbench-community_8.0.16-1ubuntu18.04_amd64.deb
You can download the source code from https://dev.mysql.com/downloads/workbench/, compile it and install it. I did it that way and it works perfectly for me. I had to install several package dependencies and review some basic compiler details, but in the end the result was successful. Follow the INSTALL file instructions and consider removing the Werror option from the CMakeLists.txt. Download antlr-4.7.1-complete.jar from web, and then run:
cmake -Wno-dev -DWITH_ANTLR_JAR='path_to_antlr-4.7.1-complete.jar' -Wno-error
make
sudo make install
screenshoot 1
screenshoot 2
UBUNTU 19.04 disco dingo -> mysql-workbench install steps:
add mysql complete source list from: https://dev.mysql.com/get/mysql-apt-config_0.8.13-1_all.deb
install libs: sudo apt-get install libgtkmm-3.0 libpcre++*
add debian source list on "/etc/apt/sources.list" :
deb http://deb.debian.org/debian stretch main contrib non-free
deb-src http://deb.debian.org/debian stretch main
deb http://deb.debian.org/debian stretch-updates main contrib non-free
deb-src http://deb.debian.org/debian stretch-updates main
deb http://security.debian.org/ stretch/updates main contrib non-free
deb-src http://security.debian.org/ stretch/updates main
sudo apt update && sudo apt upgrade -y && sudo apt dist-upgrade -y
sudo apt-get install mysql-utilities mysql-common mysql-community*
sudo apt-get install mysql-workbench (finish!!)
works here!
Latest version of workbench does not support Ubuntu 19.04 and version for 19.10 will not work.
You have to download specific workbench version supported by 19.04 from the archive.
Visit https://downloads.mysql.com/archives/workbench/
Select product version 8.0.17,
download and install package mysql-workbench-community_8.0.17-1ubuntu19.04_amd64.deb
check out gdebi
gdebi is a tool resolving & installing dependencies, for more info http://manpages.ubuntu.com/manpages/bionic/man1/gdebi.1.html
1) Install libzip4
curl -OL http://launchpadlibrarian.net/260671111/libzip4_1.1.2-1.1_amd64.deb
sudo dpkg -i libzip4_1.1.2-1.1_amd64.deb
2) Then install MySQL workbench on Ubuntu 19.04 by running the commands:
curl -OL https://dev.mysql.com/get/Downloads/MySQLGUITools/mysql-workbench-
community_8.0.16-1ubuntu18.04_amd64.deb
sudo dpkg -i mysql-workbench-community_8.0.16-1ubuntu18.04_amd64.deb
3) Install missing dependencies (libatkmm-1.6-1v5, libglibmm-2.4-1v5, libgtk2.0-0, libgtkmm-3.0-1v5, libpcrecpp0v5, libpython2.7, libsigc++-2.0-0v5, libtinfo5) by this command.
sudo apt --fix-broken install
Hope this helps.
Download the .deb file from here
Install it using command
dpkg -i *.deb。
Now MYSQL-WORKBENCH for Ubuntu-19.04(Disco) is available.
To install mysql workbench form command line you need add dependencies manually.
Edit your /etc/apt/sources.list and Append following lines:
deb http://security.ubuntu.com/ubuntu cosmic-security main
deb http://cz.archive.ubuntu.com/ubuntu cosmic main universe
sudo apt-get update
Download mysql-workbench from 'Mysql Workbench-19.04 for Ubuntu' and install by giving execute permission to mysql-workbench-community_8.0.17-1ubuntu19.04_amd64.deb file.
Now it should work. :)

Installation of bioperl in Ubuntu 12.04LS

I am trying to install Bioperl package in Perl environment of version 5.20.0,
But I am unable to get in to the stuffs.
Idea and suggestion of websites varies and its going to be uneasy for me.
Please suggest me the protocols for installing Bioperl in Ubuntu 12.04LS.
Source: http://www.bioperl.org/wiki/Installing_BioPerl_on_Ubuntu_Server
Install and Configure a Basic Ubuntu Server
Do install then configure.
apt-get clean
apt-get update
apt-get upgrade
apt-get install ssh screen
apt-get clean
Install as much as possible with apt-get
Enable Universe and Multiverse in /etc/apt/sources.list
apt-get update
apt-get install \
lynx unzip zip ncftp gcc libc6-dev make mysql-server apache2 \
perl libgd-gd2-perl libcgi-session-perl libclass-base-perl libexpat1-dev
apt-get clean
Install CPAN and perl modules not available via apt-get
cpan -i 'Text::Shellwords' # choose defaults if first time
Install BioPerl
cd /tmp
wget -N http://bioperl.org/DIST/current_core_unstable.tar.bz2
tar -xjvf current_core_unstable.tar.bz2
cd bioperl-*
perl Build.PL # choose the defaults
./Build test
./Build install

Using Kivy on Eclipse Indigo, Ubuntu 10.04 & Python 2.7

I would like to use Kivy on Eclipse Indigo on Ubuntu 10.04. I understand that python 2.7 is required (2.6 is the default on 10.04) and have python 2.7 installed as well. I've done lots of research but not found an answer. Can I do this and if so how? I don't want to upgrade ubuntu nor Eclipse since this would probably destabilise existing developments.
Kivy and Eclipse are not related, and Eclipse is not necessary for running or editing Kivy programs. I can help to answer the Kivy part of your question, and will leave Eclipse to others.
Since Ubuntu 10.04 is out of support, it's hard to tell which required system packages are not available. This will probably be the most tedious part of the process. For Kivy on Ubuntu 12.04 you need:
sudo apt-get install -y build-essential mercurial git python2.7 python-dev ccache ffmpeg libsdl-image1.2-dev libsdl-mixer1.2-dev libsdl-ttf2.0-dev libsmpeg-dev libsdl1.2-dev libportmidi-dev libswscale-dev libavformat-dev libavcodec-dev zlib1g-dev unzip
Some of those packages will have different versions on Ubuntu 10.04. Hopefully they are all available in some form.
Next you need to bootstrap an up-to-date Python setuptools environment:
sudo apt-get remove --purge -y python-virtualenv python-pip python-setuptools
wget https://bitbucket.org/pypa/setuptools/raw/bootstrap/ez_setup.py -O - | sudo python2.7
rm -f setuptools*.zip
sudo easy_install-2.7 -U pip
Now you can install an up-to-date Cython:
sudo apt-get remove --purge -y cython
sudo pip2.7 install -U cython
Next you can install an up-to-date NumPy, which is required for PyGame:
sudo apt-get remove --purge -y python-numpy
sudo pip2.7 install -U numpy
Now you can install an up-to-date PyGame:
sudo apt-get remove --purge -y python-pygame
hg clone https://bitbucket.org/pygame/pygame
cd pygame
python2.7 setup.py build
sudo python2.7 setup.py install
cd ..
sudo rm -rf pygame
Now that all of the dependencies are met, you can install an up-to-date Kivy:
sudo apt-get remove --purge -y python-kivy
sudo pip install -U kivy